Wall clock time and date at job start Sun Mar 29 2020 22:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36935 * 120.00268 * 2 1 4 4 H 1.08000 * 120.00364 * 204.42576 * 3 2 1 5 5 C 1.38815 * 119.99907 * 24.42899 * 3 2 1 6 6 N 1.31615 * 120.00050 * 8.14595 * 5 3 2 7 7 Si 1.86804 * 119.99961 * 188.14229 * 5 3 2 8 8 H 1.48500 * 109.47203 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46871 * 120.00105 * 7 5 3 10 10 H 1.48502 * 109.46966 * 240.00072 * 7 5 3 11 11 C 1.46511 * 119.99877 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47223 * 89.99744 * 11 2 1 13 13 O 1.21274 * 119.99603 * 359.97438 * 12 11 2 14 14 N 1.34770 * 119.99674 * 180.02562 * 12 11 2 15 15 C 1.39412 * 119.99548 * 185.51488 * 14 12 11 16 16 C 1.39037 * 119.69214 * 174.50400 * 15 14 12 17 17 C 1.38363 * 119.10171 * 180.02562 * 16 15 14 18 18 C 1.38834 * 118.48992 * 0.02562 * 17 16 15 19 19 C 1.38068 * 119.31610 * 0.24743 * 18 17 16 20 20 N 1.31936 * 120.84526 * 359.50369 * 19 18 17 21 21 H 1.09003 * 109.46708 * 275.09521 * 1 2 3 22 22 H 1.09001 * 109.46938 * 35.08965 * 1 2 3 23 23 H 1.08995 * 109.47611 * 155.09159 * 1 2 3 24 24 H 0.96999 * 120.00170 * 180.02562 * 6 5 3 25 25 H 1.08999 * 109.46824 * 329.99144 * 11 2 1 26 26 H 1.09001 * 109.46579 * 209.99987 * 11 2 1 27 27 H 0.97001 * 120.00189 * 5.52033 * 14 12 11 28 28 H 1.08005 * 120.45154 * 0.02581 * 16 15 14 29 29 H 1.08000 * 120.75314 * 180.02562 * 17 16 15 30 30 H 1.08002 * 120.34578 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.58242 * 179.74426 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1572 1.2277 -0.3867 5 6 1.5488 2.3342 0.4972 6 7 0.3884 2.2559 1.1132 7 14 2.3874 3.9908 0.2919 8 1 3.6724 3.8091 -0.4297 9 1 1.5063 4.8985 -0.4858 10 1 2.6502 4.5815 1.6288 11 6 2.1975 -1.2688 -0.0006 12 6 2.4486 -1.7033 -1.4216 13 8 2.0541 -1.0206 -2.3430 14 7 3.1106 -2.8510 -1.6682 15 6 3.4439 -3.1958 -2.9773 16 6 4.2253 -4.3209 -3.2154 17 6 4.5493 -4.6515 -4.5193 18 6 4.0790 -3.8417 -5.5443 19 6 3.3122 -2.7360 -5.2345 20 7 3.0153 -2.4482 -3.9817 21 1 -0.3633 0.0913 1.0237 22 1 -0.3633 0.8409 -0.5908 23 1 -0.3634 -0.9320 -0.4328 24 1 -0.0316 3.0583 1.4603 25 1 1.6084 -2.0286 0.5131 26 1 3.1499 -1.1387 0.5133 27 1 3.3551 -3.4371 -0.9350 28 1 4.5748 -4.9286 -2.3938 29 1 5.1543 -5.5198 -4.7349 30 1 4.3141 -4.0716 -6.5730 31 1 2.9476 -2.1007 -6.0282 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602773876.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:03 Heat of formation + Delta-G solvation = 47.441143 kcal Electronic energy + Delta-G solvation = -16067.803636 eV Core-core repulsion = 13351.148105 eV Total energy + Delta-G solvation = -2716.655531 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40074 -38.47078 -35.24855 -34.25889 -32.28144 -31.29616 -29.95259 -27.11971 -25.77012 -23.75859 -23.12273 -21.43573 -19.76028 -17.90812 -16.72406 -16.52604 -16.05021 -15.24113 -14.86527 -14.84441 -14.25447 -13.68384 -13.45106 -13.13433 -12.98030 -12.71856 -11.95833 -11.72422 -11.24872 -10.83623 -10.70493 -10.42685 -10.32324 -9.93439 -9.89137 -9.75995 -9.65761 -8.72622 -8.44780 -8.04422 -6.75375 -5.70333 -3.18839 1.23476 1.43367 3.25120 3.39302 3.42854 3.48803 3.52428 4.11520 4.51601 4.61486 4.86030 5.10771 5.16031 5.23850 5.45402 5.56527 5.72251 5.74216 6.04206 6.12378 6.21838 6.27595 6.48111 6.81197 7.01489 7.46352 7.59725 7.76305 7.86271 8.32440 8.42459 8.95004 9.24327 9.84095 10.31534 11.34633 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.041236 B = 0.005756 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.857787 B = 4863.043544 C = 5146.165498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.574 5.574 3 C -0.251 4.251 4 H 0.066 0.934 5 C 0.005 3.995 6 N -0.908 5.908 7 Si 0.909 3.091 8 H -0.278 1.278 9 H -0.288 1.288 10 H -0.289 1.289 11 C 0.138 3.862 12 C 0.458 3.542 13 O -0.451 6.451 14 N -0.673 5.673 15 C 0.372 3.628 16 C -0.222 4.222 17 C -0.050 4.050 18 C -0.223 4.223 19 C 0.134 3.866 20 N -0.477 5.477 21 H 0.036 0.964 22 H 0.045 0.955 23 H -0.005 1.005 24 H 0.252 0.748 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.411 0.589 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.341 -14.982 -6.920 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.293 5.293 3 C -0.380 4.380 4 H 0.084 0.916 5 C -0.193 4.193 6 N -0.553 5.553 7 Si 0.739 3.261 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.005 3.995 12 C 0.241 3.759 13 O -0.316 6.316 14 N -0.322 5.322 15 C 0.139 3.861 16 C -0.246 4.246 17 C -0.076 4.076 18 C -0.245 4.245 19 C -0.025 4.025 20 N -0.192 5.192 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.014 0.986 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.246 0.754 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.320 -13.419 -7.186 16.482 hybrid contribution 1.101 -0.206 -0.117 1.126 sum 7.420 -13.625 -7.304 17.147 Atomic orbital electron populations 1.20861 0.81870 0.95833 0.99350 1.43610 1.02121 0.99742 1.83870 1.19190 0.98806 0.85959 1.34057 0.91591 1.25029 0.97416 0.98648 0.98171 1.70067 1.17278 1.27442 1.40536 0.86108 0.78876 0.83896 0.77212 1.20308 1.21512 1.21627 1.20693 0.98640 0.90726 0.89484 1.24091 0.76863 0.79046 0.95905 1.90741 1.44049 1.50773 1.46051 1.44526 1.57976 1.24743 1.04911 1.18836 0.90758 0.89828 0.86658 1.21483 1.04804 0.99866 0.98430 1.21275 0.96253 0.98143 0.91967 1.21961 1.03804 0.98504 1.00182 1.22716 0.92746 0.94067 0.92956 1.67803 1.22418 1.29836 0.99149 0.94609 0.93599 0.98616 0.93733 0.91175 0.90039 0.75373 0.85009 0.85062 0.85266 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.31 8.96 59.84 0.54 4.84 16 2 N -0.57 -15.07 2.41 -182.50 -0.44 -15.51 16 3 C -0.25 -7.21 9.66 -15.06 -0.15 -7.36 16 4 H 0.07 1.90 7.84 -52.49 -0.41 1.49 16 5 C 0.01 0.16 5.19 -17.43 -0.09 0.06 16 6 N -0.91 -27.02 10.54 55.49 0.58 -26.43 16 7 Si 0.91 22.75 29.56 -169.99 -5.03 17.73 16 8 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 11 C 0.14 2.79 6.13 -5.19 -0.03 2.76 16 12 C 0.46 9.36 7.86 -10.99 -0.09 9.27 16 13 O -0.45 -11.54 14.70 5.56 0.08 -11.46 16 14 N -0.67 -10.43 5.39 -11.43 -0.06 -10.49 16 15 C 0.37 5.95 7.42 -154.71 -1.15 4.81 16 16 C -0.22 -2.62 9.94 -39.24 -0.39 -3.01 16 17 C -0.05 -0.52 10.17 -39.32 -0.40 -0.92 16 18 C -0.22 -2.48 10.10 -39.42 -0.40 -2.88 16 19 C 0.13 1.92 11.17 -17.57 -0.20 1.73 16 20 N -0.48 -8.86 7.89 -12.37 -0.10 -8.96 16 21 H 0.04 0.96 7.33 -51.93 -0.38 0.58 16 22 H 0.05 1.31 7.30 -51.93 -0.38 0.93 16 23 H 0.00 -0.11 8.03 -51.93 -0.42 -0.53 16 24 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 26 H 0.08 1.51 8.04 -51.93 -0.42 1.10 16 27 H 0.41 4.41 8.70 -40.82 -0.36 4.05 16 28 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 29 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 274.28 15.07 4.13 4.13 Total: -1.00 -36.39 274.28 -6.78 -43.18 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -3.61 Total: -1.49 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -2.35 Total: 9.32 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -0.01 Total: -61.40 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -36.39 -6.78 -43.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602773876.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.616 kcal (2) G-P(sol) polarization free energy of solvation -36.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds