Wall clock time and date at job start Sun Mar 29 2020 22:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36935 * 120.00268 * 2 1 4 4 H 1.08000 * 120.00364 * 204.42576 * 3 2 1 5 5 C 1.38815 * 119.99907 * 24.42899 * 3 2 1 6 6 N 1.31615 * 120.00050 * 8.14595 * 5 3 2 7 7 Si 1.86804 * 119.99961 * 188.14229 * 5 3 2 8 8 H 1.48500 * 109.47203 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46871 * 120.00105 * 7 5 3 10 10 H 1.48502 * 109.46966 * 240.00072 * 7 5 3 11 11 C 1.46511 * 119.99877 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47223 * 89.99744 * 11 2 1 13 13 O 1.21274 * 119.99603 * 359.97438 * 12 11 2 14 14 N 1.34770 * 119.99674 * 180.02562 * 12 11 2 15 15 C 1.39412 * 119.99548 * 185.51488 * 14 12 11 16 16 C 1.39037 * 119.69214 * 174.50400 * 15 14 12 17 17 C 1.38363 * 119.10171 * 180.02562 * 16 15 14 18 18 C 1.38834 * 118.48992 * 0.02562 * 17 16 15 19 19 C 1.38068 * 119.31610 * 0.24743 * 18 17 16 20 20 N 1.31936 * 120.84526 * 359.50369 * 19 18 17 21 21 H 1.09003 * 109.46708 * 275.09521 * 1 2 3 22 22 H 1.09001 * 109.46938 * 35.08965 * 1 2 3 23 23 H 1.08995 * 109.47611 * 155.09159 * 1 2 3 24 24 H 0.96999 * 120.00170 * 180.02562 * 6 5 3 25 25 H 1.08999 * 109.46824 * 329.99144 * 11 2 1 26 26 H 1.09001 * 109.46579 * 209.99987 * 11 2 1 27 27 H 0.97001 * 120.00189 * 5.52033 * 14 12 11 28 28 H 1.08005 * 120.45154 * 0.02581 * 16 15 14 29 29 H 1.08000 * 120.75314 * 180.02562 * 17 16 15 30 30 H 1.08002 * 120.34578 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.58242 * 179.74426 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1572 1.2277 -0.3867 5 6 1.5488 2.3342 0.4972 6 7 0.3884 2.2559 1.1132 7 14 2.3874 3.9908 0.2919 8 1 3.6724 3.8091 -0.4297 9 1 1.5063 4.8985 -0.4858 10 1 2.6502 4.5815 1.6288 11 6 2.1975 -1.2688 -0.0006 12 6 2.4486 -1.7033 -1.4216 13 8 2.0541 -1.0206 -2.3430 14 7 3.1106 -2.8510 -1.6682 15 6 3.4439 -3.1958 -2.9773 16 6 4.2253 -4.3209 -3.2154 17 6 4.5493 -4.6515 -4.5193 18 6 4.0790 -3.8417 -5.5443 19 6 3.3122 -2.7360 -5.2345 20 7 3.0153 -2.4482 -3.9817 21 1 -0.3633 0.0913 1.0237 22 1 -0.3633 0.8409 -0.5908 23 1 -0.3634 -0.9320 -0.4328 24 1 -0.0316 3.0583 1.4603 25 1 1.6084 -2.0286 0.5131 26 1 3.1499 -1.1387 0.5133 27 1 3.3551 -3.4371 -0.9350 28 1 4.5748 -4.9286 -2.3938 29 1 5.1543 -5.5198 -4.7349 30 1 4.3141 -4.0716 -6.5730 31 1 2.9476 -2.1007 -6.0282 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602773876.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:03 Heat of formation + Delta-G solvation = 21.749829 kcal Electronic energy + Delta-G solvation = -16068.917695 eV Core-core repulsion = 13351.148105 eV Total energy + Delta-G solvation = -2717.769590 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.57421 -39.88659 -37.13452 -35.69984 -33.40100 -33.20876 -31.17328 -28.81003 -27.90207 -24.93878 -24.34921 -23.12635 -21.22946 -19.17804 -18.67478 -17.96683 -17.01144 -16.84642 -16.38896 -16.29251 -15.60215 -15.34248 -14.97190 -14.81986 -14.45167 -13.87565 -13.69717 -13.12386 -12.83873 -12.80340 -12.62910 -12.31997 -12.08016 -11.90888 -11.66800 -11.14126 -10.74850 -10.68298 -9.92767 -9.16003 -8.81539 -7.86903 -5.37726 0.21811 0.49768 1.42014 1.45005 1.55119 1.91287 2.06469 2.49170 3.05014 3.27894 3.56696 3.66707 4.03251 4.13825 4.24514 4.36183 4.52707 4.58404 4.67160 4.78613 4.85568 5.12154 5.31114 5.33530 5.45992 5.57821 5.66287 5.96184 6.25574 6.41986 7.08993 7.20567 7.57521 7.79079 8.20856 9.16650 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.041236 B = 0.005756 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.857787 B = 4863.043544 C = 5146.165498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.596 5.596 3 C -0.260 4.260 4 H 0.058 0.942 5 C -0.048 4.048 6 N -0.935 5.935 7 Si 0.970 3.030 8 H -0.274 1.274 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.135 3.865 12 C 0.465 3.535 13 O -0.515 6.515 14 N -0.657 5.657 15 C 0.330 3.670 16 C -0.204 4.204 17 C -0.047 4.047 18 C -0.203 4.203 19 C 0.100 3.900 20 N -0.538 5.538 21 H 0.023 0.977 22 H 0.007 0.993 23 H 0.018 0.982 24 H 0.250 0.750 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.433 0.567 28 H 0.170 0.830 29 H 0.178 0.822 30 H 0.165 0.835 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.503 -17.536 -7.427 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.317 5.317 3 C -0.390 4.390 4 H 0.076 0.924 5 C -0.243 4.243 6 N -0.581 5.581 7 Si 0.798 3.202 8 H -0.199 1.199 9 H -0.220 1.220 10 H -0.206 1.206 11 C 0.004 3.996 12 C 0.250 3.750 13 O -0.385 6.385 14 N -0.307 5.307 15 C 0.099 3.901 16 C -0.227 4.227 17 C -0.073 4.073 18 C -0.224 4.224 19 C -0.057 4.057 20 N -0.254 5.254 21 H 0.041 0.959 22 H 0.025 0.975 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.124 0.876 26 H 0.118 0.882 27 H 0.273 0.727 28 H 0.187 0.813 29 H 0.195 0.805 30 H 0.182 0.818 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.541 -16.070 -7.701 19.761 hybrid contribution 0.520 0.384 -0.095 0.653 sum 9.061 -15.686 -7.796 19.721 Atomic orbital electron populations 1.20541 0.82527 0.95270 0.97857 1.43768 1.02180 1.01184 1.84559 1.19372 0.98650 0.87561 1.33392 0.92417 1.25773 0.98240 1.01807 0.98447 1.70199 1.18428 1.27968 1.41548 0.85164 0.77830 0.79834 0.77334 1.19880 1.21957 1.20575 1.20983 0.99513 0.89216 0.89909 1.23652 0.76567 0.79826 0.94981 1.90725 1.47103 1.53191 1.47480 1.43957 1.56956 1.23605 1.06202 1.19135 0.93209 0.91808 0.85917 1.21877 1.02359 0.97952 1.00506 1.21871 0.95613 0.98933 0.90892 1.22360 1.01105 0.96516 1.02399 1.22966 0.94638 0.96091 0.91991 1.67585 1.24486 1.32208 1.01099 0.95918 0.97456 0.96325 0.94026 0.87575 0.88232 0.72705 0.81281 0.80484 0.81761 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.79 8.96 127.77 1.14 10.93 16 2 N -0.60 -31.73 2.41 -731.29 -1.76 -33.49 16 3 C -0.26 -15.22 9.66 84.03 0.81 -14.41 16 4 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 5 C -0.05 -2.80 5.19 84.86 0.44 -2.36 16 6 N -0.94 -56.97 10.54 21.65 0.23 -56.74 16 7 Si 0.97 47.61 29.56 68.60 2.03 49.63 16 8 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 9 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 C 0.14 5.35 6.13 85.63 0.52 5.87 16 12 C 0.47 19.01 7.86 87.66 0.69 19.70 16 13 O -0.51 -27.21 14.70 -3.01 -0.04 -27.25 16 14 N -0.66 -19.47 5.39 -308.46 -1.66 -21.13 16 15 C 0.33 10.15 7.42 132.92 0.99 11.14 16 16 C -0.20 -4.02 9.94 22.49 0.22 -3.80 16 17 C -0.05 -0.75 10.17 22.44 0.23 -0.53 16 18 C -0.20 -3.84 10.10 22.37 0.23 -3.62 16 19 C 0.10 2.84 11.17 84.64 0.95 3.78 16 20 N -0.54 -20.19 7.89 -193.04 -1.52 -21.72 16 21 H 0.02 1.25 7.33 -2.39 -0.02 1.23 16 22 H 0.01 0.40 7.30 -2.39 -0.02 0.38 16 23 H 0.02 0.87 8.03 -2.39 -0.02 0.85 16 24 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.11 3.40 8.07 -2.39 -0.02 3.38 16 26 H 0.10 3.56 8.04 -2.39 -0.02 3.54 16 27 H 0.43 8.16 8.70 -92.71 -0.81 7.35 16 28 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 31 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -83.36 274.28 3.82 -79.54 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 0.33 Total: 4.45 kcal Atomic # 6 Polarization: 20.49 SS G_CDS: 6.22 Total: 26.71 kcal Atomic # 7 Polarization: -128.36 SS G_CDS: -4.72 Total: -133.08 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.04 Total: -27.25 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.63 kcal Total: -83.36 3.82 -79.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602773876.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.291 kcal (2) G-P(sol) polarization free energy of solvation -83.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds