Wall clock time and date at job start Sun Mar 29 2020 21:38:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.35350 * 127.24786 * 2 1
4 4 N 1.35050 * 107.24143 * 180.22532 * 3 2 1
5 5 H 0.96994 * 124.88572 * 179.72176 * 4 3 2
6 6 N 1.28474 * 110.23823 * 359.76539 * 4 3 2
7 7 C 1.31867 * 110.06152 * 359.97438 * 6 4 3
8 8 C 1.47606 * 126.52025 * 179.97438 * 7 6 4
9 9 O 1.21613 * 119.99487 * 174.75745 * 8 7 6
10 10 N 1.34778 * 120.00283 * 354.47856 * 8 7 6
11 11 C 1.36908 * 120.00009 * 175.58025 * 10 8 7
12 12 H 1.08000 * 119.99676 * 224.31570 * 11 10 8
13 13 C 1.39022 * 120.00077 * 44.31042 * 11 10 8
14 14 N 1.31377 * 120.00113 * 22.52695 * 13 11 10
15 15 Si 1.86803 * 119.99785 * 202.53038 * 13 11 10
16 16 H 1.48496 * 109.47441 * 90.00031 * 15 13 11
17 17 H 1.48500 * 109.47020 * 210.00090 * 15 13 11
18 18 H 1.48499 * 109.47030 * 329.99679 * 15 13 11
19 19 C 1.46494 * 119.99898 * 355.57609 * 10 8 7
20 20 C 1.53004 * 117.50163 * 183.07720 * 19 10 8
21 21 C 1.53006 * 117.49659 * 114.41665 * 19 10 8
22 22 H 1.09003 * 109.46709 * 270.16063 * 1 2 3
23 23 H 1.09006 * 109.47103 * 30.15484 * 1 2 3
24 24 H 1.08996 * 109.47498 * 150.15680 * 1 2 3
25 25 H 1.07997 * 126.38313 * 359.96681 * 3 2 1
26 26 H 0.97000 * 119.99869 * 184.95635 * 14 13 11
27 27 H 1.09002 * 115.55600 * 328.75444 * 19 10 8
28 28 H 1.08998 * 117.49386 * 0.02562 * 20 19 10
29 29 H 1.08996 * 117.49897 * 145.02417 * 20 19 10
30 30 H 1.09003 * 117.49472 * 214.97754 * 21 19 10
31 31 H 1.08998 * 117.50005 * 359.97438 * 21 19 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3263 1.0774 0.0000
4 7 3.5953 0.6154 -0.0051
5 1 4.3887 1.1732 -0.0101
6 7 3.6005 -0.6693 -0.0032
7 6 2.3637 -1.1267 0.0036
8 6 1.9512 -2.5440 0.0072
9 8 0.7748 -2.8345 0.1098
10 7 2.8778 -3.5158 -0.1088
11 6 2.5066 -4.8303 -0.0147
12 1 3.0960 -5.5169 0.5748
13 6 1.3710 -5.2811 -0.6780
14 7 0.9096 -4.6191 -1.7147
15 14 0.5013 -6.8280 -0.0950
16 1 -0.5315 -6.4668 0.9090
17 1 -0.1457 -7.4979 -1.2516
18 1 1.4897 -7.7493 0.5211
19 6 4.2821 -3.1657 -0.3357
20 6 5.2740 -4.3142 -0.5306
21 6 5.2828 -3.5072 0.7702
22 1 -0.3633 0.0029 1.0277
23 1 -0.3633 0.8886 -0.5163
24 1 -0.3634 -0.8913 -0.5114
25 1 2.0219 2.1136 -0.0005
26 1 0.0780 -4.8916 -2.1331
27 1 4.4528 -2.2513 -0.9040
28 1 4.8816 -5.3303 -0.4905
29 1 6.0974 -4.1553 -1.2269
30 1 6.1121 -2.8178 0.9289
31 1 4.8963 -3.9920 1.6666
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000619668701.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:38:19
Heat of formation + Delta-G solvation = 86.749171 kcal
Electronic energy + Delta-G solvation = -16932.551796 eV
Core-core repulsion = 14217.600789 eV
Total energy + Delta-G solvation = -2714.951007 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.106 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.97938 -38.19095 -35.87844 -32.90372 -32.19022 -31.27118 -30.14088 -26.56710
-25.27285 -22.79053 -21.49871 -20.76417 -20.18757 -18.85430 -17.56777 -16.37256
-15.89449 -15.09589 -14.62404 -14.11875 -13.79692 -13.21246 -12.83525 -12.66720
-12.42219 -12.29464 -11.75729 -11.46916 -11.12370 -10.82182 -10.71867 -10.60832
-10.24120 -10.05888 -9.78683 -9.34811 -8.65800 -8.63295 -8.26332 -8.02236
-6.98809 -6.04213 -3.80775 2.39237 2.83678 3.38107 3.43113 3.45407
3.48248 4.34976 4.63968 4.90239 5.04964 5.24996 5.27125 5.46229
5.76647 5.84259 5.91017 6.00808 6.15490 6.28972 6.33114 6.40573
6.51016 6.64037 6.81668 6.95556 7.07720 7.23303 7.53449 7.68950
8.33443 8.51904 9.10658 9.25033 9.70384 10.35314 11.01146
Molecular weight = 235.11amu
Principal moments of inertia in cm(-1)
A = 0.025004 B = 0.010941 C = 0.008058
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1119.571311 B = 2558.589740 C = 3473.845170
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C -0.157 4.157
3 C -0.036 4.036
4 N -0.404 5.404
5 H 0.437 0.563
6 N -0.272 5.272
7 C 0.026 3.974
8 C 0.551 3.449
9 O -0.526 6.526
10 N -0.409 5.409
11 C -0.347 4.347
12 H 0.081 0.919
13 C 0.078 3.922
14 N -0.823 5.823
15 Si 0.905 3.095
16 H -0.276 1.276
17 H -0.288 1.288
18 H -0.274 1.274
19 C 0.088 3.912
20 C -0.183 4.183
21 C -0.200 4.200
22 H 0.060 0.940
23 H 0.050 0.950
24 H 0.085 0.915
25 H 0.172 0.828
26 H 0.265 0.735
27 H 0.121 0.879
28 H 0.104 0.896
29 H 0.081 0.919
30 H 0.081 0.919
31 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.198 9.739 2.016 11.222
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.168 4.168
3 C -0.180 4.180
4 N -0.116 5.116
5 H 0.279 0.721
6 N -0.107 5.107
7 C -0.136 4.136
8 C 0.337 3.663
9 O -0.403 6.403
10 N -0.129 5.129
11 C -0.474 4.474
12 H 0.098 0.902
13 C -0.134 4.134
14 N -0.456 5.456
15 Si 0.732 3.268
16 H -0.202 1.202
17 H -0.214 1.214
18 H -0.198 1.198
19 C -0.018 4.018
20 C -0.220 4.220
21 C -0.239 4.239
22 H 0.078 0.922
23 H 0.069 0.931
24 H 0.104 0.896
25 H 0.189 0.811
26 H 0.075 0.925
27 H 0.138 0.862
28 H 0.123 0.877
29 H 0.099 0.901
30 H 0.099 0.901
31 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 5.528 9.175 1.863 10.873
hybrid contribution -0.665 0.071 0.187 0.695
sum 4.863 9.247 2.050 10.647
Atomic orbital electron populations
1.20086 0.88740 1.02541 1.01699 1.20397 0.97375 0.90923 1.08086
1.22491 0.84849 0.99832 1.10846 1.43285 1.07720 1.05120 1.55463
0.72098 1.73831 1.23614 0.92393 1.20818 1.22769 0.88320 0.96932
1.05618 1.16622 0.86063 0.81145 0.82504 1.90604 1.16541 1.81222
1.51900 1.42597 1.03064 1.05160 1.62045 1.18898 1.13412 0.84545
1.30560 0.90168 1.25188 0.98164 0.97539 0.92491 1.69925 1.19173
1.40435 1.16041 0.86327 0.80135 0.81908 0.78453 1.20230 1.21394
1.19846 1.21953 0.82077 0.97708 1.00075 1.23125 1.01198 0.98711
0.99015 1.23175 1.02795 1.04099 0.93851 0.92153 0.93064 0.89607
0.81057 0.92514 0.86220 0.87738 0.90060 0.90097 0.89560
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.30 9.88 36.01 0.36 -0.94 16
2 C -0.16 -3.01 6.25 -104.39 -0.65 -3.66 16
3 C -0.04 -0.52 11.97 -17.17 -0.21 -0.73 16
4 N -0.40 -5.80 6.83 30.47 0.21 -5.59 16
5 H 0.44 4.17 8.96 -190.44 -1.71 2.47 16
6 N -0.27 -5.24 8.89 33.41 0.30 -4.95 16
7 C 0.03 0.59 6.83 -82.77 -0.57 0.02 16
8 C 0.55 15.06 7.10 -12.44 -0.09 14.98 16
9 O -0.53 -15.82 12.86 5.27 0.07 -15.75 16
10 N -0.41 -10.99 2.82 -108.87 -0.31 -11.29 16
11 C -0.35 -9.82 7.92 -14.99 -0.12 -9.94 16
12 H 0.08 2.19 7.28 -52.49 -0.38 1.81 16
13 C 0.08 2.23 4.24 -17.46 -0.07 2.16 16
14 N -0.82 -24.84 11.92 55.50 0.66 -24.18 16
15 Si 0.91 22.20 29.61 -169.99 -5.03 17.17 16
16 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16
17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
19 C 0.09 1.98 5.17 -67.93 -0.35 1.63 16
20 C -0.18 -3.63 9.80 -26.69 -0.26 -3.89 16
21 C -0.20 -3.85 10.36 -26.69 -0.28 -4.12 16
22 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16
23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16
24 H 0.09 1.83 6.84 -51.93 -0.36 1.48 16
25 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16
26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16
27 H 0.12 2.63 5.89 -51.93 -0.31 2.32 16
28 H 0.10 2.24 6.72 -51.93 -0.35 1.89 16
29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16
30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
31 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16
LS Contribution 266.56 15.07 4.02 4.02
Total: -1.00 -34.46 266.56 -7.10 -41.56
By element:
Atomic # 1 Polarization: 8.31 SS G_CDS: -4.77 Total: 3.53 kcal
Atomic # 6 Polarization: -2.27 SS G_CDS: -2.24 Total: -4.51 kcal
Atomic # 7 Polarization: -46.87 SS G_CDS: 0.86 Total: -46.01 kcal
Atomic # 8 Polarization: -15.82 SS G_CDS: 0.07 Total: -15.75 kcal
Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal
Total LS contribution 4.02 Total: 4.02 kcal
Total: -34.46 -7.10 -41.56 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000619668701.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 128.305 kcal
(2) G-P(sol) polarization free energy of solvation -34.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.847 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) 86.749 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds