Wall clock time and date at job start Sun Mar 29 2020 21:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35350 * 127.24786 * 2 1 4 4 N 1.35050 * 107.24143 * 180.22532 * 3 2 1 5 5 H 0.96994 * 124.88572 * 179.72176 * 4 3 2 6 6 N 1.28474 * 110.23823 * 359.76539 * 4 3 2 7 7 C 1.31867 * 110.06152 * 359.97438 * 6 4 3 8 8 C 1.47606 * 126.52025 * 179.97438 * 7 6 4 9 9 O 1.21613 * 119.99487 * 174.75745 * 8 7 6 10 10 N 1.34778 * 120.00283 * 354.47856 * 8 7 6 11 11 C 1.36908 * 120.00009 * 175.58025 * 10 8 7 12 12 H 1.08000 * 119.99676 * 224.31570 * 11 10 8 13 13 C 1.39022 * 120.00077 * 44.31042 * 11 10 8 14 14 N 1.31377 * 120.00113 * 22.52695 * 13 11 10 15 15 Si 1.86803 * 119.99785 * 202.53038 * 13 11 10 16 16 H 1.48496 * 109.47441 * 90.00031 * 15 13 11 17 17 H 1.48500 * 109.47020 * 210.00090 * 15 13 11 18 18 H 1.48499 * 109.47030 * 329.99679 * 15 13 11 19 19 C 1.46494 * 119.99898 * 355.57609 * 10 8 7 20 20 C 1.53004 * 117.50163 * 183.07720 * 19 10 8 21 21 C 1.53006 * 117.49659 * 114.41665 * 19 10 8 22 22 H 1.09003 * 109.46709 * 270.16063 * 1 2 3 23 23 H 1.09006 * 109.47103 * 30.15484 * 1 2 3 24 24 H 1.08996 * 109.47498 * 150.15680 * 1 2 3 25 25 H 1.07997 * 126.38313 * 359.96681 * 3 2 1 26 26 H 0.97000 * 119.99869 * 184.95635 * 14 13 11 27 27 H 1.09002 * 115.55600 * 328.75444 * 19 10 8 28 28 H 1.08998 * 117.49386 * 0.02562 * 20 19 10 29 29 H 1.08996 * 117.49897 * 145.02417 * 20 19 10 30 30 H 1.09003 * 117.49472 * 214.97754 * 21 19 10 31 31 H 1.08998 * 117.50005 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3263 1.0774 0.0000 4 7 3.5953 0.6154 -0.0051 5 1 4.3887 1.1732 -0.0101 6 7 3.6005 -0.6693 -0.0032 7 6 2.3637 -1.1267 0.0036 8 6 1.9512 -2.5440 0.0072 9 8 0.7748 -2.8345 0.1098 10 7 2.8778 -3.5158 -0.1088 11 6 2.5066 -4.8303 -0.0147 12 1 3.0960 -5.5169 0.5748 13 6 1.3710 -5.2811 -0.6780 14 7 0.9096 -4.6191 -1.7147 15 14 0.5013 -6.8280 -0.0950 16 1 -0.5315 -6.4668 0.9090 17 1 -0.1457 -7.4979 -1.2516 18 1 1.4897 -7.7493 0.5211 19 6 4.2821 -3.1657 -0.3357 20 6 5.2740 -4.3142 -0.5306 21 6 5.2828 -3.5072 0.7702 22 1 -0.3633 0.0029 1.0277 23 1 -0.3633 0.8886 -0.5163 24 1 -0.3634 -0.8913 -0.5114 25 1 2.0219 2.1136 -0.0005 26 1 0.0780 -4.8916 -2.1331 27 1 4.4528 -2.2513 -0.9040 28 1 4.8816 -5.3303 -0.4905 29 1 6.0974 -4.1553 -1.2269 30 1 6.1121 -2.8178 0.9289 31 1 4.8963 -3.9920 1.6666 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619668701.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:19 Heat of formation + Delta-G solvation = 86.749171 kcal Electronic energy + Delta-G solvation = -16932.551796 eV Core-core repulsion = 14217.600789 eV Total energy + Delta-G solvation = -2714.951007 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.97938 -38.19095 -35.87844 -32.90372 -32.19022 -31.27118 -30.14088 -26.56710 -25.27285 -22.79053 -21.49871 -20.76417 -20.18757 -18.85430 -17.56777 -16.37256 -15.89449 -15.09589 -14.62404 -14.11875 -13.79692 -13.21246 -12.83525 -12.66720 -12.42219 -12.29464 -11.75729 -11.46916 -11.12370 -10.82182 -10.71867 -10.60832 -10.24120 -10.05888 -9.78683 -9.34811 -8.65800 -8.63295 -8.26332 -8.02236 -6.98809 -6.04213 -3.80775 2.39237 2.83678 3.38107 3.43113 3.45407 3.48248 4.34976 4.63968 4.90239 5.04964 5.24996 5.27125 5.46229 5.76647 5.84259 5.91017 6.00808 6.15490 6.28972 6.33114 6.40573 6.51016 6.64037 6.81668 6.95556 7.07720 7.23303 7.53449 7.68950 8.33443 8.51904 9.10658 9.25033 9.70384 10.35314 11.01146 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.025004 B = 0.010941 C = 0.008058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.571311 B = 2558.589740 C = 3473.845170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.157 4.157 3 C -0.036 4.036 4 N -0.404 5.404 5 H 0.437 0.563 6 N -0.272 5.272 7 C 0.026 3.974 8 C 0.551 3.449 9 O -0.526 6.526 10 N -0.409 5.409 11 C -0.347 4.347 12 H 0.081 0.919 13 C 0.078 3.922 14 N -0.823 5.823 15 Si 0.905 3.095 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.088 3.912 20 C -0.183 4.183 21 C -0.200 4.200 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.172 0.828 26 H 0.265 0.735 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.198 9.739 2.016 11.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.168 4.168 3 C -0.180 4.180 4 N -0.116 5.116 5 H 0.279 0.721 6 N -0.107 5.107 7 C -0.136 4.136 8 C 0.337 3.663 9 O -0.403 6.403 10 N -0.129 5.129 11 C -0.474 4.474 12 H 0.098 0.902 13 C -0.134 4.134 14 N -0.456 5.456 15 Si 0.732 3.268 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.018 4.018 20 C -0.220 4.220 21 C -0.239 4.239 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.104 0.896 25 H 0.189 0.811 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.528 9.175 1.863 10.873 hybrid contribution -0.665 0.071 0.187 0.695 sum 4.863 9.247 2.050 10.647 Atomic orbital electron populations 1.20086 0.88740 1.02541 1.01699 1.20397 0.97375 0.90923 1.08086 1.22491 0.84849 0.99832 1.10846 1.43285 1.07720 1.05120 1.55463 0.72098 1.73831 1.23614 0.92393 1.20818 1.22769 0.88320 0.96932 1.05618 1.16622 0.86063 0.81145 0.82504 1.90604 1.16541 1.81222 1.51900 1.42597 1.03064 1.05160 1.62045 1.18898 1.13412 0.84545 1.30560 0.90168 1.25188 0.98164 0.97539 0.92491 1.69925 1.19173 1.40435 1.16041 0.86327 0.80135 0.81908 0.78453 1.20230 1.21394 1.19846 1.21953 0.82077 0.97708 1.00075 1.23125 1.01198 0.98711 0.99015 1.23175 1.02795 1.04099 0.93851 0.92153 0.93064 0.89607 0.81057 0.92514 0.86220 0.87738 0.90060 0.90097 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 9.88 36.01 0.36 -0.94 16 2 C -0.16 -3.01 6.25 -104.39 -0.65 -3.66 16 3 C -0.04 -0.52 11.97 -17.17 -0.21 -0.73 16 4 N -0.40 -5.80 6.83 30.47 0.21 -5.59 16 5 H 0.44 4.17 8.96 -190.44 -1.71 2.47 16 6 N -0.27 -5.24 8.89 33.41 0.30 -4.95 16 7 C 0.03 0.59 6.83 -82.77 -0.57 0.02 16 8 C 0.55 15.06 7.10 -12.44 -0.09 14.98 16 9 O -0.53 -15.82 12.86 5.27 0.07 -15.75 16 10 N -0.41 -10.99 2.82 -108.87 -0.31 -11.29 16 11 C -0.35 -9.82 7.92 -14.99 -0.12 -9.94 16 12 H 0.08 2.19 7.28 -52.49 -0.38 1.81 16 13 C 0.08 2.23 4.24 -17.46 -0.07 2.16 16 14 N -0.82 -24.84 11.92 55.50 0.66 -24.18 16 15 Si 0.91 22.20 29.61 -169.99 -5.03 17.17 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.09 1.98 5.17 -67.93 -0.35 1.63 16 20 C -0.18 -3.63 9.80 -26.69 -0.26 -3.89 16 21 C -0.20 -3.85 10.36 -26.69 -0.28 -4.12 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.09 1.83 6.84 -51.93 -0.36 1.48 16 25 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.12 2.63 5.89 -51.93 -0.31 2.32 16 28 H 0.10 2.24 6.72 -51.93 -0.35 1.89 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 266.56 15.07 4.02 4.02 Total: -1.00 -34.46 266.56 -7.10 -41.56 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.77 Total: 3.53 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.24 Total: -4.51 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.86 Total: -46.01 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.07 Total: -15.75 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.46 -7.10 -41.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619668701.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.305 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds