Wall clock time and date at job start Sun Mar 29 2020 21:38:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.35350 * 127.24786 * 2 1
4 4 N 1.35050 * 107.24143 * 180.22532 * 3 2 1
5 5 H 0.96994 * 124.88572 * 179.72176 * 4 3 2
6 6 N 1.28474 * 110.23823 * 359.76539 * 4 3 2
7 7 C 1.31867 * 110.06152 * 359.97438 * 6 4 3
8 8 C 1.47606 * 126.52025 * 179.97438 * 7 6 4
9 9 O 1.21613 * 119.99487 * 174.75745 * 8 7 6
10 10 N 1.34778 * 120.00283 * 354.47856 * 8 7 6
11 11 C 1.36908 * 120.00009 * 175.58025 * 10 8 7
12 12 H 1.08000 * 119.99676 * 224.31570 * 11 10 8
13 13 C 1.39022 * 120.00077 * 44.31042 * 11 10 8
14 14 N 1.31377 * 120.00113 * 22.52695 * 13 11 10
15 15 Si 1.86803 * 119.99785 * 202.53038 * 13 11 10
16 16 H 1.48496 * 109.47441 * 90.00031 * 15 13 11
17 17 H 1.48500 * 109.47020 * 210.00090 * 15 13 11
18 18 H 1.48499 * 109.47030 * 329.99679 * 15 13 11
19 19 C 1.46494 * 119.99898 * 355.57609 * 10 8 7
20 20 C 1.53004 * 117.50163 * 183.07720 * 19 10 8
21 21 C 1.53006 * 117.49659 * 114.41665 * 19 10 8
22 22 H 1.09003 * 109.46709 * 270.16063 * 1 2 3
23 23 H 1.09006 * 109.47103 * 30.15484 * 1 2 3
24 24 H 1.08996 * 109.47498 * 150.15680 * 1 2 3
25 25 H 1.07997 * 126.38313 * 359.96681 * 3 2 1
26 26 H 0.97000 * 119.99869 * 184.95635 * 14 13 11
27 27 H 1.09002 * 115.55600 * 328.75444 * 19 10 8
28 28 H 1.08998 * 117.49386 * 0.02562 * 20 19 10
29 29 H 1.08996 * 117.49897 * 145.02417 * 20 19 10
30 30 H 1.09003 * 117.49472 * 214.97754 * 21 19 10
31 31 H 1.08998 * 117.50005 * 359.97438 * 21 19 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3263 1.0774 0.0000
4 7 3.5953 0.6154 -0.0051
5 1 4.3887 1.1732 -0.0101
6 7 3.6005 -0.6693 -0.0032
7 6 2.3637 -1.1267 0.0036
8 6 1.9512 -2.5440 0.0072
9 8 0.7748 -2.8345 0.1098
10 7 2.8778 -3.5158 -0.1088
11 6 2.5066 -4.8303 -0.0147
12 1 3.0960 -5.5169 0.5748
13 6 1.3710 -5.2811 -0.6780
14 7 0.9096 -4.6191 -1.7147
15 14 0.5013 -6.8280 -0.0950
16 1 -0.5315 -6.4668 0.9090
17 1 -0.1457 -7.4979 -1.2516
18 1 1.4897 -7.7493 0.5211
19 6 4.2821 -3.1657 -0.3357
20 6 5.2740 -4.3142 -0.5306
21 6 5.2828 -3.5072 0.7702
22 1 -0.3633 0.0029 1.0277
23 1 -0.3633 0.8886 -0.5163
24 1 -0.3634 -0.8913 -0.5114
25 1 2.0219 2.1136 -0.0005
26 1 0.0780 -4.8916 -2.1331
27 1 4.4528 -2.2513 -0.9040
28 1 4.8816 -5.3303 -0.4905
29 1 6.0974 -4.1553 -1.2269
30 1 6.1121 -2.8178 0.9289
31 1 4.8963 -3.9920 1.6666
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000619668701.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:38:19
Heat of formation + Delta-G solvation = 62.223803 kcal
Electronic energy + Delta-G solvation = -16933.615296 eV
Core-core repulsion = 14217.600789 eV
Total energy + Delta-G solvation = -2716.014507 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.106 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-43.36954 -40.09081 -37.71397 -34.84205 -33.70169 -33.09336 -31.78425 -27.98010
-27.25266 -24.53559 -23.07480 -22.52935 -21.66351 -20.55879 -18.92151 -18.18169
-17.74229 -16.70540 -16.52544 -15.88023 -15.54421 -14.96618 -14.61018 -14.19826
-13.91426 -13.73825 -13.63003 -13.03954 -12.94405 -12.77168 -12.72062 -12.24075
-12.06328 -11.68762 -11.54081 -10.98362 -10.71920 -10.10912 -10.02746 -9.61860
-9.02821 -8.17555 -5.99211 0.93641 1.36635 1.40414 1.47785 1.51402
2.24219 2.39299 2.82570 3.10360 3.17060 3.47588 3.77608 4.08985
4.21772 4.34552 4.40040 4.53322 4.68238 4.77987 4.88522 4.94901
5.03253 5.14010 5.32529 5.37083 5.46125 5.50328 5.72614 6.20775
6.42780 7.00557 7.06698 7.28112 7.66280 8.33158 8.86840
Molecular weight = 235.11amu
Principal moments of inertia in cm(-1)
A = 0.025004 B = 0.010941 C = 0.008058
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1119.571311 B = 2558.589740 C = 3473.845170
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C -0.195 4.195
3 C 0.009 3.991
4 N -0.375 5.375
5 H 0.462 0.538
6 N -0.275 5.275
7 C -0.023 4.023
8 C 0.535 3.465
9 O -0.574 6.574
10 N -0.428 5.428
11 C -0.361 4.361
12 H 0.081 0.919
13 C 0.028 3.972
14 N -0.864 5.864
15 Si 0.966 3.034
16 H -0.289 1.289
17 H -0.280 1.280
18 H -0.253 1.253
19 C 0.057 3.943
20 C -0.176 4.176
21 C -0.173 4.173
22 H 0.061 0.939
23 H 0.091 0.909
24 H 0.036 0.964
25 H 0.233 0.767
26 H 0.260 0.740
27 H 0.125 0.875
28 H 0.083 0.917
29 H 0.114 0.886
30 H 0.117 0.883
31 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.082 12.002 2.504 14.159
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.206 4.206
3 C -0.137 4.137
4 N -0.090 5.090
5 H 0.310 0.690
6 N -0.112 5.112
7 C -0.182 4.182
8 C 0.323 3.677
9 O -0.453 6.453
10 N -0.147 5.147
11 C -0.488 4.488
12 H 0.099 0.901
13 C -0.180 4.180
14 N -0.499 5.499
15 Si 0.791 3.209
16 H -0.215 1.215
17 H -0.206 1.206
18 H -0.177 1.177
19 C -0.048 4.048
20 C -0.213 4.213
21 C -0.211 4.211
22 H 0.080 0.920
23 H 0.110 0.890
24 H 0.055 0.945
25 H 0.249 0.751
26 H 0.070 0.930
27 H 0.142 0.858
28 H 0.101 0.899
29 H 0.133 0.867
30 H 0.135 0.865
31 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 7.488 11.425 2.356 13.862
hybrid contribution -1.127 -0.452 0.071 1.217
sum 6.360 10.973 2.427 12.913
Atomic orbital electron populations
1.19983 0.88687 1.02009 1.01657 1.20713 0.98121 0.91374 1.10366
1.23146 0.83306 1.01035 1.06194 1.43420 1.09289 1.03942 1.52363
0.69012 1.73668 1.22119 0.94646 1.20790 1.22249 0.90618 0.95445
1.09936 1.17368 0.85699 0.83343 0.81286 1.90541 1.18358 1.82713
1.53734 1.42831 1.04941 1.04720 1.62200 1.19145 1.13830 0.85642
1.30195 0.90124 1.26055 0.98909 1.00507 0.92482 1.70026 1.19493
1.42724 1.17614 0.85378 0.78939 0.78795 0.77823 1.21520 1.20559
1.17677 1.22121 0.80488 0.99114 1.03042 1.23182 1.00961 0.96877
1.00292 1.23164 1.01956 1.03534 0.92492 0.92042 0.89038 0.94498
0.75071 0.93019 0.85750 0.89868 0.86747 0.86471 0.91015
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -2.33 9.88 71.24 0.70 -1.63 16
2 C -0.20 -7.22 6.25 -19.72 -0.12 -7.34 16
3 C 0.01 0.21 11.97 83.53 1.00 1.21 16
4 N -0.37 -9.16 6.83 -57.51 -0.39 -9.55 16
5 H 0.46 6.34 8.96 -220.00 -1.97 4.37 16
6 N -0.28 -10.10 8.89 -48.20 -0.43 -10.52 16
7 C -0.02 -1.03 6.83 42.43 0.29 -0.74 16
8 C 0.53 30.57 7.10 86.72 0.62 31.19 16
9 O -0.57 -36.67 12.86 -4.07 -0.05 -36.72 16
10 N -0.43 -23.73 2.82 -616.60 -1.74 -25.48 16
11 C -0.36 -21.16 7.92 84.09 0.67 -20.49 16
12 H 0.08 4.55 7.28 -2.91 -0.02 4.53 16
13 C 0.03 1.64 4.24 84.95 0.36 2.00 16
14 N -0.86 -54.81 11.92 21.68 0.26 -54.56 16
15 Si 0.97 47.26 29.61 68.60 2.03 49.29 16
16 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16
17 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16
18 H -0.25 -11.38 7.11 99.48 0.71 -10.67 16
19 C 0.06 2.57 5.17 45.00 0.23 2.81 16
20 C -0.18 -6.78 9.80 30.62 0.30 -6.48 16
21 C -0.17 -6.35 10.36 30.62 0.32 -6.03 16
22 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
23 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16
24 H 0.04 1.66 6.84 -2.39 -0.02 1.64 16
25 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16
26 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16
27 H 0.13 5.38 5.89 -2.39 -0.01 5.37 16
28 H 0.08 3.58 6.72 -2.39 -0.02 3.56 16
29 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16
30 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16
31 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16
Total: -1.00 -81.71 266.56 3.23 -78.48
By element:
Atomic # 1 Polarization: 15.37 SS G_CDS: -0.81 Total: 14.56 kcal
Atomic # 6 Polarization: -9.87 SS G_CDS: 4.36 Total: -5.51 kcal
Atomic # 7 Polarization: -97.80 SS G_CDS: -2.30 Total: -100.11 kcal
Atomic # 8 Polarization: -36.67 SS G_CDS: -0.05 Total: -36.72 kcal
Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal
Total: -81.71 3.23 -78.48 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000619668701.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 140.704 kcal
(2) G-P(sol) polarization free energy of solvation -81.706 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.998 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.480 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.224 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds