Wall clock time and date at job start Sun Mar 29 2020 22:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21311 * 120.00179 * 2 1 4 4 C 1.46769 * 120.00236 * 179.97438 * 2 1 3 5 5 C 1.37981 * 125.92098 * 179.97438 * 4 2 1 6 6 N 1.34707 * 106.65208 * 180.02562 * 5 4 2 7 7 C 1.46503 * 126.52057 * 179.73874 * 6 5 4 8 8 C 1.53006 * 109.47212 * 124.44737 * 7 6 5 9 9 C 1.50702 * 115.54878 * 279.34265 * 8 7 6 10 10 H 1.07998 * 120.00102 * 144.52029 * 9 8 7 11 11 C 1.37881 * 119.99749 * 324.51483 * 9 8 7 12 12 N 1.31514 * 120.00224 * 338.26600 * 11 9 8 13 13 Si 1.86800 * 119.99868 * 158.26178 * 11 9 8 14 14 H 1.48503 * 109.47333 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47078 * 120.00131 * 13 11 9 16 16 H 1.48504 * 109.47079 * 240.00300 * 13 11 9 17 17 C 1.52990 * 117.50040 * 133.62912 * 8 7 6 18 18 C 1.52998 * 60.00261 * 252.51326 * 17 8 7 19 19 N 1.40151 * 106.95754 * 0.02562 * 6 5 4 20 20 N 1.28714 * 108.68180 * 359.97438 * 19 6 5 21 21 H 1.08995 * 109.47089 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46808 * 300.00088 * 1 2 3 23 23 H 1.08997 * 109.46944 * 59.99930 * 1 2 3 24 24 H 1.08006 * 126.67429 * 0.04078 * 5 4 2 25 25 H 1.08995 * 109.47267 * 244.44495 * 7 6 5 26 26 H 1.08998 * 109.47114 * 4.45073 * 7 6 5 27 27 H 0.96998 * 120.00198 * 185.46842 * 12 11 9 28 28 H 1.09001 * 117.50369 * 0.02562 * 17 8 7 29 29 H 1.09004 * 117.50111 * 145.02088 * 17 8 7 30 30 H 1.08999 * 117.49846 * 252.51316 * 18 17 8 31 31 H 1.09000 * 117.50163 * 107.49144 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2409 -1.2710 0.0006 5 6 3.6133 -1.4133 0.0001 6 7 3.8642 -2.7368 0.0003 7 6 5.1833 -3.3741 -0.0053 8 6 5.2934 -4.3295 1.1848 9 6 5.6198 -3.6851 2.5074 10 1 5.1889 -4.0736 3.4183 11 6 6.4689 -2.5998 2.5545 12 7 7.3146 -2.3833 1.5709 13 14 6.4179 -1.4369 4.0155 14 1 5.3872 -1.8984 4.9799 15 1 7.7454 -1.4196 4.6810 16 1 6.0810 -0.0684 3.5473 17 6 5.8595 -5.7258 0.9198 18 6 4.3664 -5.5466 1.2016 19 7 2.6232 -3.3881 0.0003 20 7 1.6915 -2.5000 0.0006 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 4.3443 -0.6182 -0.0001 25 1 5.3132 -3.9324 -0.9324 26 1 5.9566 -2.6096 0.0699 27 1 7.9656 -1.6674 1.6397 28 1 6.1541 -5.9639 -0.1023 29 1 6.4686 -6.1788 1.7021 30 1 3.9932 -5.8816 2.1694 31 1 3.6783 -5.6669 0.3649 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000656452219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:12 Heat of formation + Delta-G solvation = 78.595519 kcal Electronic energy + Delta-G solvation = -16435.110143 eV Core-core repulsion = 13719.805567 eV Total energy + Delta-G solvation = -2715.304576 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.46999 -38.66759 -37.01627 -33.28019 -32.48060 -30.89830 -29.36616 -26.90645 -25.69403 -23.00694 -21.74742 -21.21348 -19.92210 -19.03071 -16.98539 -16.14483 -15.41903 -15.17399 -14.86146 -14.75069 -14.36716 -14.03353 -13.68479 -13.17312 -12.20945 -12.10155 -11.94128 -11.90622 -11.54806 -11.16923 -11.08520 -10.66081 -10.63549 -10.40136 -10.16392 -9.65558 -9.48963 -9.31079 -8.95256 -8.63625 -8.34802 -6.41651 -4.35171 1.50874 2.05188 2.85012 3.10152 3.22489 3.27792 3.39069 4.15816 4.27017 4.66362 4.86603 5.20674 5.37647 5.40125 5.49887 5.55871 5.76056 5.76405 5.97311 6.07697 6.18231 6.30607 6.47996 6.58550 6.63933 6.87921 7.04954 7.15820 7.24462 7.64029 7.70159 8.10146 8.58237 8.61405 9.21202 10.62499 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.021605 B = 0.009773 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.694535 B = 2864.314629 C = 3707.876883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.448 3.552 3 O -0.475 6.475 4 C -0.164 4.164 5 C 0.100 3.900 6 N -0.312 5.312 7 C 0.135 3.865 8 C 0.029 3.971 9 C -0.488 4.488 10 H 0.066 0.934 11 C 0.070 3.930 12 N -0.880 5.880 13 Si 0.886 3.114 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.276 1.276 17 C -0.189 4.189 18 C -0.189 4.189 19 N -0.065 5.065 20 N -0.214 5.214 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.193 0.807 25 H 0.069 0.931 26 H 0.149 0.851 27 H 0.269 0.731 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.220 2.005 -4.044 7.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.325 3.675 3 O -0.349 6.349 4 C -0.301 4.301 5 C -0.061 4.061 6 N -0.092 5.092 7 C 0.016 3.984 8 C 0.027 3.973 9 C -0.525 4.525 10 H 0.085 0.915 11 C -0.133 4.133 12 N -0.517 5.517 13 Si 0.712 3.288 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.202 1.202 17 C -0.228 4.228 18 C -0.227 4.227 19 N -0.046 5.046 20 N -0.088 5.088 21 H 0.109 0.891 22 H 0.109 0.891 23 H 0.108 0.892 24 H 0.210 0.790 25 H 0.087 0.913 26 H 0.166 0.834 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.441 1.344 -4.131 7.769 hybrid contribution 0.865 1.295 0.857 1.778 sum -5.576 2.639 -3.274 6.984 Atomic orbital electron populations 1.22067 0.93169 1.05407 1.04051 1.21244 0.91308 0.85140 0.69813 1.90545 1.72390 1.33365 1.38636 1.22213 0.91462 0.94869 1.21588 1.23852 0.97528 0.88193 0.96513 1.50772 1.09650 1.04741 1.44046 1.22348 0.77056 1.00880 0.98143 1.19043 0.99085 0.85183 0.93959 1.20570 1.28168 1.12479 0.91274 0.91549 1.24967 0.94226 0.97383 0.96679 1.69743 1.16993 1.32029 1.32937 0.86606 0.78355 0.81143 0.82650 1.19423 1.20665 1.20189 1.23038 0.95537 1.04391 0.99839 1.22891 0.92307 1.06114 1.01365 1.81838 0.84121 1.16708 1.21966 1.74567 1.25148 0.98502 1.10553 0.89091 0.89135 0.89195 0.78968 0.91258 0.83379 0.92116 0.91387 0.89839 0.90468 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 10.32 36.00 0.37 -1.88 16 2 C 0.45 7.23 7.24 -30.86 -0.22 7.01 16 3 O -0.48 -8.71 17.62 5.53 0.10 -8.61 16 4 C -0.16 -3.00 6.96 -83.29 -0.58 -3.58 16 5 C 0.10 1.91 11.34 -16.38 -0.19 1.72 16 6 N -0.31 -6.36 3.68 -60.71 -0.22 -6.58 16 7 C 0.13 2.82 6.21 -4.04 -0.03 2.80 16 8 C 0.03 0.65 1.93 -155.66 -0.30 0.35 16 9 C -0.49 -12.48 8.98 -34.44 -0.31 -12.79 16 10 H 0.07 1.76 7.91 -52.49 -0.41 1.34 16 11 C 0.07 1.76 5.04 -17.82 -0.09 1.67 16 12 N -0.88 -21.91 11.11 55.43 0.62 -21.29 16 13 Si 0.89 19.96 29.59 -169.99 -5.03 14.93 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 C -0.19 -3.97 9.88 -26.74 -0.26 -4.23 16 18 C -0.19 -3.97 9.19 -26.73 -0.25 -4.22 16 19 N -0.07 -1.35 12.25 60.35 0.74 -0.61 16 20 N -0.21 -4.13 11.73 32.97 0.39 -3.74 16 21 H 0.09 1.07 7.44 -51.93 -0.39 0.69 16 22 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.19 3.31 8.06 -52.48 -0.42 2.88 16 25 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 26 H 0.15 3.29 5.33 -51.93 -0.28 3.01 16 27 H 0.27 6.38 8.32 -40.82 -0.34 6.04 16 28 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 29 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 30 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 31 H 0.08 1.65 7.47 -51.93 -0.39 1.26 16 LS Contribution 277.50 15.07 4.18 4.18 Total: -1.00 -27.16 277.50 -4.63 -31.79 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -3.55 Total: 3.08 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.85 Total: -13.15 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 1.52 Total: -32.22 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.10 Total: -8.61 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.16 -4.63 -31.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000656452219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.389 kcal (2) G-P(sol) polarization free energy of solvation -27.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds