Wall clock time and date at job start Sun Mar 29 2020 22:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21311 * 120.00179 * 2 1 4 4 C 1.46769 * 120.00236 * 179.97438 * 2 1 3 5 5 C 1.37981 * 125.92098 * 179.97438 * 4 2 1 6 6 N 1.34707 * 106.65208 * 180.02562 * 5 4 2 7 7 C 1.46503 * 126.52057 * 179.73874 * 6 5 4 8 8 C 1.53006 * 109.47212 * 124.44737 * 7 6 5 9 9 C 1.50702 * 115.54878 * 279.34265 * 8 7 6 10 10 H 1.07998 * 120.00102 * 144.52029 * 9 8 7 11 11 C 1.37881 * 119.99749 * 324.51483 * 9 8 7 12 12 N 1.31514 * 120.00224 * 338.26600 * 11 9 8 13 13 Si 1.86800 * 119.99868 * 158.26178 * 11 9 8 14 14 H 1.48503 * 109.47333 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47078 * 120.00131 * 13 11 9 16 16 H 1.48504 * 109.47079 * 240.00300 * 13 11 9 17 17 C 1.52990 * 117.50040 * 133.62912 * 8 7 6 18 18 C 1.52998 * 60.00261 * 252.51326 * 17 8 7 19 19 N 1.40151 * 106.95754 * 0.02562 * 6 5 4 20 20 N 1.28714 * 108.68180 * 359.97438 * 19 6 5 21 21 H 1.08995 * 109.47089 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46808 * 300.00088 * 1 2 3 23 23 H 1.08997 * 109.46944 * 59.99930 * 1 2 3 24 24 H 1.08006 * 126.67429 * 0.04078 * 5 4 2 25 25 H 1.08995 * 109.47267 * 244.44495 * 7 6 5 26 26 H 1.08998 * 109.47114 * 4.45073 * 7 6 5 27 27 H 0.96998 * 120.00198 * 185.46842 * 12 11 9 28 28 H 1.09001 * 117.50369 * 0.02562 * 17 8 7 29 29 H 1.09004 * 117.50111 * 145.02088 * 17 8 7 30 30 H 1.08999 * 117.49846 * 252.51316 * 18 17 8 31 31 H 1.09000 * 117.50163 * 107.49144 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2409 -1.2710 0.0006 5 6 3.6133 -1.4133 0.0001 6 7 3.8642 -2.7368 0.0003 7 6 5.1833 -3.3741 -0.0053 8 6 5.2934 -4.3295 1.1848 9 6 5.6198 -3.6851 2.5074 10 1 5.1889 -4.0736 3.4183 11 6 6.4689 -2.5998 2.5545 12 7 7.3146 -2.3833 1.5709 13 14 6.4179 -1.4369 4.0155 14 1 5.3872 -1.8984 4.9799 15 1 7.7454 -1.4196 4.6810 16 1 6.0810 -0.0684 3.5473 17 6 5.8595 -5.7258 0.9198 18 6 4.3664 -5.5466 1.2016 19 7 2.6232 -3.3881 0.0003 20 7 1.6915 -2.5000 0.0006 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 4.3443 -0.6182 -0.0001 25 1 5.3132 -3.9324 -0.9324 26 1 5.9566 -2.6096 0.0699 27 1 7.9656 -1.6674 1.6397 28 1 6.1541 -5.9639 -0.1023 29 1 6.4686 -6.1788 1.7021 30 1 3.9932 -5.8816 2.1694 31 1 3.6783 -5.6669 0.3649 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000656452219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:12 Heat of formation + Delta-G solvation = 63.171542 kcal Electronic energy + Delta-G solvation = -16435.778977 eV Core-core repulsion = 13719.805567 eV Total energy + Delta-G solvation = -2715.973410 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.97481 -40.01058 -38.71379 -34.83654 -34.37507 -32.25058 -30.61111 -28.50701 -27.55313 -24.40021 -23.31879 -22.87065 -21.52038 -20.59436 -18.58900 -17.78858 -16.95129 -16.81703 -16.42007 -16.13151 -15.73264 -15.69248 -15.20169 -14.77681 -13.86258 -13.66115 -13.17892 -13.03334 -12.99204 -12.96410 -12.81451 -12.47676 -12.24067 -12.08878 -11.86532 -11.27687 -10.99031 -10.95523 -10.69541 -10.21238 -10.11283 -8.31345 -6.29281 0.11844 0.54309 1.29316 1.31202 1.38956 1.45958 2.00692 2.30188 2.80146 2.99183 3.36947 3.63348 3.84321 3.93148 4.11475 4.26318 4.45794 4.48038 4.56276 4.70602 4.75782 4.88973 4.91586 4.97306 5.18064 5.25672 5.32622 5.51757 5.64363 5.72983 6.24821 6.43146 6.62738 7.09333 7.27891 8.71929 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.021605 B = 0.009773 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.694535 B = 2864.314629 C = 3707.876883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.449 3.551 3 O -0.499 6.499 4 C -0.164 4.164 5 C 0.088 3.912 6 N -0.318 5.318 7 C 0.143 3.857 8 C 0.004 3.996 9 C -0.512 4.512 10 H 0.045 0.955 11 C 0.045 3.955 12 N -0.888 5.888 13 Si 0.929 3.071 14 H -0.280 1.280 15 H -0.275 1.275 16 H -0.273 1.273 17 C -0.180 4.180 18 C -0.177 4.177 19 N -0.086 5.086 20 N -0.211 5.211 21 H 0.091 0.909 22 H 0.110 0.890 23 H 0.115 0.885 24 H 0.205 0.795 25 H 0.088 0.912 26 H 0.137 0.863 27 H 0.273 0.727 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.989 2.596 -4.561 8.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.328 3.672 3 O -0.375 6.375 4 C -0.303 4.303 5 C -0.072 4.072 6 N -0.099 5.099 7 C 0.023 3.977 8 C 0.003 3.997 9 C -0.549 4.549 10 H 0.063 0.937 11 C -0.157 4.157 12 N -0.526 5.526 13 Si 0.755 3.245 14 H -0.205 1.205 15 H -0.201 1.201 16 H -0.198 1.198 17 C -0.218 4.218 18 C -0.215 4.215 19 N -0.067 5.067 20 N -0.085 5.085 21 H 0.110 0.890 22 H 0.128 0.872 23 H 0.134 0.866 24 H 0.222 0.778 25 H 0.106 0.894 26 H 0.154 0.846 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.215 1.920 -4.654 8.798 hybrid contribution 1.085 1.118 1.028 1.866 sum -6.130 3.038 -3.626 7.743 Atomic orbital electron populations 1.22090 0.89357 1.06186 1.06121 1.21797 0.93100 0.83702 0.68601 1.90543 1.73296 1.33763 1.39867 1.22716 0.91445 0.95587 1.20507 1.24234 0.98422 0.88086 0.96483 1.50730 1.09425 1.05178 1.44563 1.22150 0.77133 1.00223 0.98146 1.19120 1.00717 0.86165 0.93736 1.20666 1.28740 1.13680 0.91852 0.93707 1.25352 0.94014 0.97945 0.98382 1.69783 1.16998 1.32244 1.33539 0.85953 0.78088 0.79844 0.80638 1.20537 1.20050 1.19841 1.23040 0.95295 1.02658 1.00833 1.22817 0.92551 1.04837 1.01298 1.81806 0.84366 1.17309 1.23180 1.74533 1.24879 0.98754 1.10306 0.88992 0.87212 0.86647 0.77807 0.89430 0.84614 0.91730 0.89152 0.90639 0.91288 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 10.32 71.24 0.74 -3.00 16 2 C 0.45 13.65 7.24 27.92 0.20 13.85 16 3 O -0.50 -17.51 17.62 -3.13 -0.06 -17.56 16 4 C -0.16 -5.81 6.96 40.89 0.28 -5.52 16 5 C 0.09 3.29 11.34 84.19 0.95 4.24 16 6 N -0.32 -12.75 3.68 -345.98 -1.27 -14.02 16 7 C 0.14 5.87 6.21 86.38 0.54 6.41 16 8 C 0.00 0.17 1.93 -52.93 -0.10 0.07 16 9 C -0.51 -26.36 8.98 25.60 0.23 -26.13 16 10 H 0.04 2.43 7.91 -2.91 -0.02 2.41 16 11 C 0.05 2.25 5.04 84.66 0.43 2.67 16 12 N -0.89 -43.72 11.11 21.45 0.24 -43.48 16 13 Si 0.93 40.74 29.59 68.60 2.03 42.77 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 C -0.18 -7.33 9.88 30.59 0.30 -7.03 16 18 C -0.18 -7.33 9.19 30.59 0.28 -7.04 16 19 N -0.09 -3.47 12.25 37.02 0.45 -3.02 16 20 N -0.21 -7.90 11.73 -49.61 -0.58 -8.48 16 21 H 0.09 1.91 7.44 -2.39 -0.02 1.89 16 22 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 23 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.21 6.90 8.06 -2.91 -0.02 6.88 16 25 H 0.09 3.21 7.94 -2.39 -0.02 3.19 16 26 H 0.14 5.96 5.33 -2.39 -0.01 5.95 16 27 H 0.27 12.72 8.32 -92.71 -0.77 11.95 16 28 H 0.09 3.25 8.08 -2.39 -0.02 3.23 16 29 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 30 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.09 3.59 7.47 -2.39 -0.02 3.58 16 Total: -1.00 -56.30 277.50 5.80 -50.50 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.14 Total: 14.78 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.85 Total: -21.47 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -1.16 Total: -69.01 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.06 Total: -17.56 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -56.30 5.80 -50.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000656452219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.667 kcal (2) G-P(sol) polarization free energy of solvation -56.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds