Wall clock time and date at job start Sun Mar 29 2020 22:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36810 * 120.00193 * 2 1 4 4 H 1.08003 * 119.99708 * 130.39381 * 3 2 1 5 5 C 1.39043 * 120.00320 * 310.39605 * 3 2 1 6 6 N 1.31374 * 120.00160 * 181.98905 * 5 3 2 7 7 Si 1.86799 * 119.99894 * 1.99381 * 5 3 2 8 8 H 1.48502 * 109.47356 * 84.45799 * 7 5 3 9 9 H 1.48496 * 109.47298 * 204.45469 * 7 5 3 10 10 H 1.48493 * 109.47214 * 324.45728 * 7 5 3 11 11 C 1.34784 * 119.99665 * 179.73293 * 2 1 3 12 12 O 1.21795 * 119.99684 * 179.97438 * 11 2 1 13 13 C 1.41640 * 120.00322 * 359.97438 * 11 2 1 14 14 C 1.35179 * 120.00438 * 172.06047 * 13 11 2 15 15 C 1.46936 * 119.99575 * 349.66059 * 14 13 11 16 16 C 1.41447 * 126.44628 * 315.47668 * 15 14 13 17 17 N 1.30440 * 108.04491 * 179.81646 * 16 15 14 18 18 N 1.39924 * 108.97354 * 0.45239 * 17 16 15 19 19 C 1.46499 * 125.74277 * 179.73108 * 18 17 16 20 20 C 1.34417 * 108.51499 * 359.70678 * 18 17 16 21 21 H 1.08993 * 109.47504 * 87.00097 * 1 2 3 22 22 H 1.09002 * 109.46928 * 207.00512 * 1 2 3 23 23 H 1.09003 * 109.46557 * 327.00166 * 1 2 3 24 24 H 0.97000 * 120.00124 * 180.02562 * 6 5 3 25 25 H 1.08000 * 119.99896 * 352.06379 * 13 11 2 26 26 H 1.07997 * 120.00462 * 169.65840 * 14 13 11 27 27 H 1.08002 * 125.98045 * 0.02562 * 16 15 14 28 28 H 1.08998 * 109.47206 * 269.97470 * 19 18 17 29 29 H 1.08997 * 109.47109 * 29.97240 * 19 18 17 30 30 H 1.08997 * 109.47127 * 149.96938 * 19 18 17 31 31 H 1.08003 * 126.32120 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1848 0.0000 4 1 2.9440 1.3493 0.7124 5 6 1.8210 2.1771 -0.9170 6 7 2.5035 3.2994 -0.9429 7 14 0.4096 1.9146 -2.1122 8 1 -0.8705 2.2814 -1.4550 9 1 0.6119 2.7662 -3.3118 10 1 0.3654 0.4874 -2.5201 11 6 2.1389 -1.1673 0.0054 12 8 3.3568 -1.1673 0.0050 13 6 1.4307 -2.3939 0.0117 14 6 2.0967 -3.5598 -0.1446 15 6 3.5102 -3.5503 -0.5457 16 6 4.0899 -2.7554 -1.5620 17 7 5.3640 -3.0302 -1.6125 18 7 5.6572 -4.0064 -0.6539 19 6 6.9780 -4.5872 -0.4001 20 6 4.5231 -4.3214 -0.0047 21 1 -0.3634 0.0538 -1.0262 22 1 -0.3633 -0.9156 0.4666 23 1 -0.3632 0.8619 0.5597 24 1 2.2743 3.9918 -1.5823 25 1 0.3585 -2.3977 0.1413 26 1 1.5899 -4.4982 0.0255 27 1 3.5694 -2.0429 -2.1847 28 1 7.1146 -5.4675 -1.0281 29 1 7.7487 -3.8522 -0.6322 30 1 7.0535 -4.8738 0.6488 31 1 4.4216 -5.0430 0.7925 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701316280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:27 Heat of formation + Delta-G solvation = 96.672904 kcal Electronic energy + Delta-G solvation = -16414.066296 eV Core-core repulsion = 13699.545614 eV Total energy + Delta-G solvation = -2714.520682 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.55896 -38.69539 -34.96579 -33.33439 -32.25283 -31.80229 -29.10742 -26.62584 -26.29351 -24.92630 -22.25117 -20.50373 -20.08712 -17.91419 -17.02238 -16.58539 -16.04214 -15.27027 -15.01407 -14.23865 -13.96781 -13.48289 -13.38436 -12.98712 -12.65705 -12.31838 -12.26011 -12.04397 -11.98674 -11.74993 -11.31168 -10.76357 -10.31098 -10.13825 -9.83649 -9.29490 -8.91868 -8.86299 -8.38773 -7.41663 -7.24072 -6.25750 -3.99851 1.66889 2.48640 2.96765 3.14459 3.24504 3.28558 3.65222 4.22337 4.49852 4.73921 4.82855 5.11832 5.15058 5.24459 5.41040 5.49076 5.59863 5.71829 5.91568 6.14100 6.16159 6.20255 6.36474 6.41059 6.84034 6.95929 7.23404 7.45794 7.75158 8.28351 8.44318 8.67681 9.09840 9.39699 9.94652 10.85615 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035771 B = 0.007444 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.565565 B = 3760.757226 C = 4144.747255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.472 5.472 3 C -0.309 4.309 4 H 0.098 0.902 5 C 0.059 3.941 6 N -0.876 5.876 7 Si 0.895 3.105 8 H -0.275 1.275 9 H -0.292 1.292 10 H -0.264 1.264 11 C 0.496 3.504 12 O -0.548 6.548 13 C -0.209 4.209 14 C -0.012 4.012 15 C -0.198 4.198 16 C 0.135 3.865 17 N -0.315 5.315 18 N -0.384 5.384 19 C 0.108 3.892 20 C 0.054 3.946 21 H 0.042 0.958 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.272 0.728 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.175 0.825 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 -15.792 1.059 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.195 5.195 3 C -0.437 4.437 4 H 0.115 0.885 5 C -0.146 4.146 6 N -0.513 5.513 7 Si 0.724 3.276 8 H -0.201 1.201 9 H -0.219 1.219 10 H -0.189 1.189 11 C 0.288 3.712 12 O -0.430 6.430 13 C -0.230 4.230 14 C -0.034 4.034 15 C -0.209 4.209 16 C -0.053 4.053 17 N -0.135 5.135 18 N -0.165 5.165 19 C -0.034 4.034 20 C -0.093 4.093 21 H 0.060 0.940 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.139 0.861 26 H 0.138 0.862 27 H 0.192 0.808 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.539 -15.344 0.441 15.359 hybrid contribution -1.744 0.053 -0.041 1.745 sum -1.205 -15.290 0.400 15.343 Atomic orbital electron populations 1.22277 0.84497 1.02040 1.00694 1.43633 1.03602 1.06072 1.66159 1.18955 1.17545 0.89974 1.17227 0.88461 1.25540 0.97383 0.95668 0.96011 1.69652 1.39096 1.06357 1.36209 0.86803 0.81921 0.78084 0.80817 1.20091 1.21906 1.18926 1.17131 0.88064 0.84064 0.81988 1.90752 1.13256 1.86831 1.52136 1.22380 0.99976 0.94237 1.06424 1.21421 0.91267 0.96607 0.94116 1.19221 0.94297 1.03712 1.03705 1.23739 0.90421 0.94880 0.96251 1.77048 1.16783 1.07764 1.11930 1.48007 1.07297 1.32236 1.28948 1.21690 0.81635 0.98521 1.01562 1.22713 0.86419 1.01128 0.98991 0.93964 0.91993 0.91255 0.91717 0.86144 0.86218 0.80833 0.91475 0.89661 0.90130 0.81465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.96 8.18 59.85 0.49 1.45 16 2 N -0.47 -11.73 2.54 -125.46 -0.32 -12.05 16 3 C -0.31 -9.02 9.27 -15.03 -0.14 -9.16 16 4 H 0.10 3.20 8.06 -52.48 -0.42 2.78 16 5 C 0.06 1.70 5.50 -17.45 -0.10 1.60 16 6 N -0.88 -26.48 13.95 55.50 0.77 -25.71 16 7 Si 0.90 21.30 24.68 -169.99 -4.19 17.11 16 8 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.26 -6.08 6.26 56.52 0.35 -5.72 16 11 C 0.50 11.81 6.94 -14.96 -0.10 11.70 16 12 O -0.55 -14.92 12.06 5.10 0.06 -14.85 16 13 C -0.21 -3.78 9.12 -39.37 -0.36 -4.14 16 14 C -0.01 -0.19 10.15 -37.15 -0.38 -0.57 16 15 C -0.20 -3.59 4.57 -105.12 -0.48 -4.07 16 16 C 0.13 2.80 8.97 -16.92 -0.15 2.65 16 17 N -0.31 -6.44 12.49 30.89 0.39 -6.05 16 18 N -0.38 -6.28 3.98 -67.48 -0.27 -6.55 16 19 C 0.11 1.15 11.44 59.85 0.68 1.84 16 20 C 0.05 0.83 11.52 -16.39 -0.19 0.64 16 21 H 0.04 0.84 4.30 -51.93 -0.22 0.61 16 22 H 0.06 0.98 5.82 -51.93 -0.30 0.67 16 23 H 0.07 1.36 7.84 -51.93 -0.41 0.95 16 24 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.12 1.79 5.96 -52.49 -0.31 1.47 16 26 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 27 H 0.17 3.77 7.73 -52.49 -0.41 3.36 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.17 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 264.40 15.07 3.98 3.98 Total: -1.00 -36.13 264.40 -3.67 -39.80 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -3.37 Total: 2.38 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -0.72 Total: 1.95 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.57 Total: -50.36 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.06 Total: -14.85 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.19 Total: 17.11 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -36.13 -3.67 -39.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701316280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.470 kcal (2) G-P(sol) polarization free energy of solvation -36.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds