Wall clock time and date at job start Sun Mar 29 2020 22:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36810 * 120.00193 * 2 1 4 4 H 1.08003 * 119.99708 * 130.39381 * 3 2 1 5 5 C 1.39043 * 120.00320 * 310.39605 * 3 2 1 6 6 N 1.31374 * 120.00160 * 181.98905 * 5 3 2 7 7 Si 1.86799 * 119.99894 * 1.99381 * 5 3 2 8 8 H 1.48502 * 109.47356 * 84.45799 * 7 5 3 9 9 H 1.48496 * 109.47298 * 204.45469 * 7 5 3 10 10 H 1.48493 * 109.47214 * 324.45728 * 7 5 3 11 11 C 1.34784 * 119.99665 * 179.73293 * 2 1 3 12 12 O 1.21795 * 119.99684 * 179.97438 * 11 2 1 13 13 C 1.41640 * 120.00322 * 359.97438 * 11 2 1 14 14 C 1.35179 * 120.00438 * 172.06047 * 13 11 2 15 15 C 1.46936 * 119.99575 * 349.66059 * 14 13 11 16 16 C 1.41447 * 126.44628 * 315.47668 * 15 14 13 17 17 N 1.30440 * 108.04491 * 179.81646 * 16 15 14 18 18 N 1.39924 * 108.97354 * 0.45239 * 17 16 15 19 19 C 1.46499 * 125.74277 * 179.73108 * 18 17 16 20 20 C 1.34417 * 108.51499 * 359.70678 * 18 17 16 21 21 H 1.08993 * 109.47504 * 87.00097 * 1 2 3 22 22 H 1.09002 * 109.46928 * 207.00512 * 1 2 3 23 23 H 1.09003 * 109.46557 * 327.00166 * 1 2 3 24 24 H 0.97000 * 120.00124 * 180.02562 * 6 5 3 25 25 H 1.08000 * 119.99896 * 352.06379 * 13 11 2 26 26 H 1.07997 * 120.00462 * 169.65840 * 14 13 11 27 27 H 1.08002 * 125.98045 * 0.02562 * 16 15 14 28 28 H 1.08998 * 109.47206 * 269.97470 * 19 18 17 29 29 H 1.08997 * 109.47109 * 29.97240 * 19 18 17 30 30 H 1.08997 * 109.47127 * 149.96938 * 19 18 17 31 31 H 1.08003 * 126.32120 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1848 0.0000 4 1 2.9440 1.3493 0.7124 5 6 1.8210 2.1771 -0.9170 6 7 2.5035 3.2994 -0.9429 7 14 0.4096 1.9146 -2.1122 8 1 -0.8705 2.2814 -1.4550 9 1 0.6119 2.7662 -3.3118 10 1 0.3654 0.4874 -2.5201 11 6 2.1389 -1.1673 0.0054 12 8 3.3568 -1.1673 0.0050 13 6 1.4307 -2.3939 0.0117 14 6 2.0967 -3.5598 -0.1446 15 6 3.5102 -3.5503 -0.5457 16 6 4.0899 -2.7554 -1.5620 17 7 5.3640 -3.0302 -1.6125 18 7 5.6572 -4.0064 -0.6539 19 6 6.9780 -4.5872 -0.4001 20 6 4.5231 -4.3214 -0.0047 21 1 -0.3634 0.0538 -1.0262 22 1 -0.3633 -0.9156 0.4666 23 1 -0.3632 0.8619 0.5597 24 1 2.2743 3.9918 -1.5823 25 1 0.3585 -2.3977 0.1413 26 1 1.5899 -4.4982 0.0255 27 1 3.5694 -2.0429 -2.1847 28 1 7.1146 -5.4675 -1.0281 29 1 7.7487 -3.8522 -0.6322 30 1 7.0535 -4.8738 0.6488 31 1 4.4216 -5.0430 0.7925 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701316280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:26 Heat of formation + Delta-G solvation = 68.698258 kcal Electronic energy + Delta-G solvation = -16415.279368 eV Core-core repulsion = 13699.545614 eV Total energy + Delta-G solvation = -2715.733754 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.91470 -40.45289 -36.78087 -34.75402 -34.15115 -33.33598 -30.47045 -28.24691 -27.72111 -26.60497 -23.85868 -21.81599 -21.59099 -19.55584 -18.95180 -18.19724 -17.58149 -16.90394 -16.21781 -15.94643 -15.55060 -15.12305 -14.87391 -14.59412 -13.91864 -13.87937 -13.76138 -13.53559 -13.35226 -13.26915 -12.81731 -12.56388 -12.26836 -11.63339 -11.54055 -11.02076 -10.66632 -10.31765 -10.08291 -9.36599 -8.63369 -8.43581 -6.24761 0.34074 1.14866 1.25020 1.34528 1.43775 1.84378 2.20410 2.23173 2.71678 3.01556 3.11064 3.75750 4.08640 4.26011 4.33153 4.39755 4.48019 4.52532 4.61250 4.69391 4.78519 4.89113 4.92283 5.03619 5.48424 5.60010 5.73468 5.82918 6.08473 6.32999 6.74156 6.88904 7.04475 7.38016 8.05428 8.72758 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035771 B = 0.007444 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.565565 B = 3760.757226 C = 4144.747255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.493 5.493 3 C -0.322 4.322 4 H 0.030 0.970 5 C 0.001 3.999 6 N -0.932 5.932 7 Si 0.969 3.031 8 H -0.238 1.238 9 H -0.297 1.297 10 H -0.249 1.249 11 C 0.492 3.508 12 O -0.598 6.598 13 C -0.242 4.242 14 C 0.033 3.967 15 C -0.239 4.239 16 C 0.108 3.892 17 N -0.361 5.361 18 N -0.382 5.382 19 C 0.095 3.905 20 C 0.078 3.922 21 H 0.051 0.949 22 H 0.110 0.890 23 H 0.067 0.933 24 H 0.276 0.724 25 H 0.162 0.838 26 H 0.181 0.819 27 H 0.144 0.856 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 -19.748 1.484 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.216 5.216 3 C -0.451 4.451 4 H 0.048 0.952 5 C -0.199 4.199 6 N -0.571 5.571 7 Si 0.792 3.208 8 H -0.162 1.162 9 H -0.225 1.225 10 H -0.174 1.174 11 C 0.286 3.714 12 O -0.482 6.482 13 C -0.263 4.263 14 C 0.011 3.989 15 C -0.251 4.251 16 C -0.078 4.078 17 N -0.182 5.182 18 N -0.163 5.163 19 C -0.044 4.044 20 C -0.070 4.070 21 H 0.069 0.931 22 H 0.129 0.871 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.179 0.821 26 H 0.198 0.802 27 H 0.162 0.838 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.135 0.865 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.745 -19.319 0.883 19.418 hybrid contribution -0.740 1.086 -0.083 1.317 sum -2.485 -18.233 0.800 18.419 Atomic orbital electron populations 1.22441 0.80947 1.04604 1.01701 1.43761 1.05745 1.04750 1.67391 1.18532 1.17291 0.92607 1.16622 0.95162 1.26499 1.00749 0.94815 0.97815 1.69819 1.41686 1.07781 1.37773 0.85669 0.79019 0.78555 0.77545 1.16172 1.22460 1.17404 1.18165 0.87896 0.85652 0.79671 1.90731 1.15795 1.87845 1.53851 1.22298 1.01717 0.91711 1.10598 1.22051 0.89833 0.98195 0.88792 1.19672 0.96610 1.04595 1.04198 1.23527 0.91109 0.95431 0.97721 1.76920 1.16882 1.10012 1.14435 1.48494 1.09510 1.30793 1.27493 1.22160 0.78902 0.98912 1.04475 1.23541 0.84956 1.00082 0.98396 0.93136 0.87141 0.91465 0.91428 0.82097 0.80238 0.83837 0.88729 0.90512 0.86511 0.75967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 8.18 127.77 1.05 2.71 16 2 N -0.49 -24.80 2.54 -669.00 -1.70 -26.50 16 3 C -0.32 -19.94 9.27 84.11 0.78 -19.16 16 4 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 5 C 0.00 0.08 5.50 84.95 0.47 0.55 16 6 N -0.93 -59.61 13.95 21.68 0.30 -59.31 16 7 Si 0.97 44.21 24.68 68.60 1.69 45.90 16 8 H -0.24 -9.43 7.11 99.48 0.71 -8.72 16 9 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 10 H -0.25 -10.69 6.26 99.48 0.62 -10.07 16 11 C 0.49 23.59 6.94 85.08 0.59 24.18 16 12 O -0.60 -34.01 12.06 -4.65 -0.06 -34.06 16 13 C -0.24 -8.01 9.12 22.40 0.20 -7.80 16 14 C 0.03 0.89 10.15 23.84 0.24 1.14 16 15 C -0.24 -8.20 4.57 -20.19 -0.09 -8.29 16 16 C 0.11 4.65 8.97 85.69 0.77 5.42 16 17 N -0.36 -15.08 12.49 -56.17 -0.70 -15.78 16 18 N -0.38 -11.76 3.98 -367.42 -1.46 -13.22 16 19 C 0.10 1.76 11.44 127.77 1.46 3.22 16 20 C 0.08 2.12 11.52 84.32 0.97 3.09 16 21 H 0.05 1.80 4.30 -2.39 -0.01 1.79 16 22 H 0.11 2.98 5.82 -2.39 -0.01 2.96 16 23 H 0.07 2.50 7.84 -2.39 -0.02 2.48 16 24 H 0.28 16.26 8.31 -92.71 -0.77 15.48 16 25 H 0.16 3.89 5.96 -2.91 -0.02 3.88 16 26 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 27 H 0.14 6.76 7.73 -2.91 -0.02 6.74 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.22 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -89.50 264.40 5.57 -83.93 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 1.06 Total: 13.99 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 6.44 Total: 5.05 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -3.56 Total: -114.81 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.06 Total: -34.06 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.69 Total: 45.90 kcal Total: -89.50 5.57 -83.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701316280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.632 kcal (2) G-P(sol) polarization free energy of solvation -89.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds