Wall clock time and date at job start Sun Mar 29 2020 22:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36810 * 119.99685 * 2 1 4 4 H 1.08004 * 119.99704 * 203.66239 * 3 2 1 5 5 C 1.39045 * 120.00272 * 23.67153 * 3 2 1 6 6 N 1.31367 * 120.00094 * 15.11911 * 5 3 2 7 7 Si 1.86802 * 119.99939 * 195.12728 * 5 3 2 8 8 H 1.48493 * 109.47157 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47406 * 119.99688 * 7 5 3 10 10 H 1.48505 * 109.47084 * 239.99559 * 7 5 3 11 11 C 1.34768 * 120.00091 * 180.02562 * 2 1 3 12 12 O 1.21796 * 120.00212 * 180.02562 * 11 2 1 13 13 C 1.41654 * 120.00073 * 0.27051 * 11 2 1 14 14 C 1.35174 * 119.99948 * 179.72547 * 13 11 2 15 15 C 1.46946 * 119.99675 * 179.97438 * 14 13 11 16 16 C 1.41444 * 126.44462 * 0.03286 * 15 14 13 17 17 N 1.30443 * 108.04173 * 179.97438 * 16 15 14 18 18 N 1.39925 * 108.97178 * 359.97438 * 17 16 15 19 19 C 1.46505 * 125.73679 * 180.02562 * 18 17 16 20 20 C 1.34421 * 108.51807 * 359.72699 * 18 17 16 21 21 H 1.09002 * 109.47468 * 264.83829 * 1 2 3 22 22 H 1.09003 * 109.47271 * 24.83639 * 1 2 3 23 23 H 1.08995 * 109.47302 * 144.83499 * 1 2 3 24 24 H 0.97006 * 120.00303 * 180.02562 * 6 5 3 25 25 H 1.07998 * 119.99501 * 359.72837 * 13 11 2 26 26 H 1.07998 * 120.00551 * 0.02562 * 14 13 11 27 27 H 1.07999 * 125.98082 * 0.02562 * 16 15 14 28 28 H 1.08991 * 109.47147 * 89.97649 * 19 18 17 29 29 H 1.09002 * 109.46705 * 209.97434 * 19 18 17 30 30 H 1.08994 * 109.46931 * 329.96545 * 19 18 17 31 31 H 1.07992 * 126.32248 * 180.28469 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1849 0.0000 4 1 3.1609 1.2242 -0.3754 5 6 1.5415 2.3384 0.4834 6 7 0.4466 2.2515 1.2041 7 14 2.2822 4.0116 0.1080 8 1 3.5056 3.8379 -0.7155 9 1 1.2957 4.8337 -0.6377 10 1 2.6345 4.6936 1.3793 11 6 2.1389 -1.1671 -0.0005 12 8 3.3568 -1.1671 -0.0001 13 6 1.4306 -2.3939 -0.0069 14 6 2.1066 -3.5645 -0.0130 15 6 1.3718 -4.8371 -0.0190 16 6 -0.0337 -4.9958 -0.0198 17 7 -0.2959 -6.2736 -0.0264 18 7 0.9088 -6.9852 -0.0306 19 6 1.0408 -8.4443 -0.0388 20 6 1.9247 -6.1049 -0.0325 21 1 -0.3634 -0.0925 1.0235 22 1 -0.3634 0.9326 -0.4317 23 1 -0.3633 -0.8401 -0.5918 24 1 0.0225 3.0562 1.5411 25 1 0.3506 -2.3938 -0.0068 26 1 3.1865 -3.5645 -0.0126 27 1 -0.7623 -4.1986 -0.0165 28 1 1.0729 -8.8004 -1.0684 29 1 1.9602 -8.7288 0.4728 30 1 0.1876 -8.8891 0.4732 31 1 2.9779 -6.3435 -0.0402 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701316282.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:30 Heat of formation + Delta-G solvation = 49.429718 kcal Electronic energy + Delta-G solvation = -15621.439876 eV Core-core repulsion = 12904.870576 eV Total energy + Delta-G solvation = -2716.569300 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.04929 -40.40646 -36.74976 -35.16795 -33.72698 -33.28419 -30.64361 -28.38116 -27.58416 -26.40326 -24.11875 -22.08815 -21.35447 -19.50295 -18.84646 -18.25257 -17.37195 -16.65103 -16.36513 -15.99360 -15.72499 -15.30843 -14.78038 -14.42541 -13.89809 -13.71833 -13.57569 -13.34368 -13.20831 -13.06776 -12.86629 -12.58560 -12.23637 -12.09068 -11.56297 -11.19374 -10.98580 -10.44575 -10.36617 -9.66059 -8.81653 -8.35577 -5.93086 0.14617 1.02396 1.40892 1.42135 1.57172 1.63421 2.02984 2.30642 2.72263 3.23253 3.26602 3.62009 3.94293 4.23801 4.25012 4.39269 4.46816 4.49624 4.72104 4.72306 4.75586 4.93526 5.03400 5.34442 5.44658 5.51961 5.61899 5.67362 6.06447 6.16786 6.54912 6.66408 7.20189 7.50072 8.11229 8.68161 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.069767 B = 0.004602 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.241465 B = 6083.146878 C = 6412.935452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.457 5.457 3 C -0.344 4.344 4 H 0.072 0.928 5 C -0.004 4.004 6 N -0.892 5.892 7 Si 0.992 3.008 8 H -0.273 1.273 9 H -0.263 1.263 10 H -0.275 1.275 11 C 0.463 3.537 12 O -0.652 6.652 13 C -0.227 4.227 14 C 0.021 3.979 15 C -0.248 4.248 16 C 0.065 3.935 17 N -0.332 5.332 18 N -0.368 5.368 19 C 0.089 3.911 20 C 0.096 3.904 21 H 0.042 0.958 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.275 0.725 25 H 0.136 0.864 26 H 0.119 0.881 27 H 0.197 0.803 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -17.638 -2.402 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.173 5.173 3 C -0.473 4.473 4 H 0.089 0.911 5 C -0.206 4.206 6 N -0.530 5.530 7 Si 0.815 3.185 8 H -0.197 1.197 9 H -0.188 1.188 10 H -0.200 1.200 11 C 0.258 3.742 12 O -0.544 6.544 13 C -0.249 4.249 14 C -0.002 4.002 15 C -0.260 4.260 16 C -0.121 4.121 17 N -0.153 5.153 18 N -0.147 5.147 19 C -0.050 4.050 20 C -0.055 4.055 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.154 0.846 26 H 0.137 0.863 27 H 0.213 0.787 28 H 0.109 0.891 29 H 0.138 0.862 30 H 0.112 0.888 31 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -2.829 -18.551 -2.307 18.907 hybrid contribution 0.815 1.754 0.062 1.935 sum -2.014 -16.797 -2.246 17.066 Atomic orbital electron populations 1.21464 0.79437 1.00884 1.00518 1.43806 1.06820 1.04983 1.61730 1.19691 1.00167 0.86159 1.41269 0.91055 1.26166 0.97032 1.03145 0.94244 1.70069 1.20582 1.30866 1.31517 0.84906 0.78433 0.76856 0.78297 1.19723 1.18756 1.20010 1.17659 0.87526 0.85616 0.83382 1.90566 1.15881 1.88561 1.59403 1.21764 1.00724 0.91761 1.10608 1.21431 0.98610 0.89432 0.90697 1.19515 0.93174 0.92915 1.20376 1.24388 0.95929 0.94265 0.97522 1.77052 1.06207 1.05671 1.26367 1.48734 1.03217 1.08463 1.54320 1.22327 1.05941 0.71679 1.05074 1.23652 0.96379 0.88233 0.97229 0.93902 0.92318 0.91285 0.91515 0.84648 0.86305 0.78670 0.89072 0.86231 0.88830 0.76390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.58 8.27 127.77 1.06 6.64 16 2 N -0.46 -25.33 3.00 -669.01 -2.01 -27.34 16 3 C -0.34 -20.62 9.23 84.11 0.78 -19.84 16 4 H 0.07 4.55 7.44 -2.91 -0.02 4.53 16 5 C 0.00 -0.20 4.98 84.96 0.42 0.22 16 6 N -0.89 -48.82 10.93 21.68 0.24 -48.58 16 7 Si 0.99 43.46 29.58 68.60 2.03 45.49 16 8 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 9 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 C 0.46 24.85 7.40 85.09 0.63 25.48 16 12 O -0.65 -39.71 15.81 -4.66 -0.07 -39.79 16 13 C -0.23 -9.31 8.59 22.41 0.19 -9.12 16 14 C 0.02 0.74 9.64 23.85 0.23 0.97 16 15 C -0.25 -6.97 6.08 -20.19 -0.12 -7.09 16 16 C 0.06 1.77 11.39 85.69 0.98 2.75 16 17 N -0.33 -8.82 12.49 -56.17 -0.70 -9.53 16 18 N -0.37 -7.38 3.98 -367.42 -1.46 -8.84 16 19 C 0.09 0.81 11.44 127.77 1.46 2.27 16 20 C 0.10 1.96 11.52 84.32 0.97 2.93 16 21 H 0.04 2.03 7.88 -2.39 -0.02 2.01 16 22 H 0.06 2.86 6.75 -2.39 -0.02 2.84 16 23 H 0.07 2.60 6.38 -2.39 -0.02 2.59 16 24 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 25 H 0.14 4.77 5.07 -2.91 -0.01 4.76 16 26 H 0.12 4.35 7.45 -2.91 -0.02 4.33 16 27 H 0.20 4.70 7.31 -2.91 -0.02 4.68 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.12 0.36 8.14 -2.39 -0.02 0.35 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.22 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -78.32 274.74 5.75 -72.57 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.14 Total: 10.81 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 6.60 Total: 5.20 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -3.94 Total: -94.28 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.07 Total: -39.79 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -78.32 5.75 -72.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701316282.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.998 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds