Wall clock time and date at job start Sun Mar 29 2020 22:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34395 * 125.74554 * 2 1 4 4 C 1.38286 * 107.36820 * 179.97438 * 3 2 1 5 5 C 1.46964 * 126.44664 * 179.97438 * 4 3 2 6 6 C 1.35043 * 119.99929 * 134.59706 * 5 4 3 7 7 C 1.41826 * 120.00427 * 347.23063 * 6 5 4 8 8 O 1.21739 * 119.99516 * 353.14966 * 7 6 5 9 9 N 1.34770 * 120.00149 * 173.15137 * 7 6 5 10 10 C 1.46504 * 120.00135 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.47123 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00410 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99699 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99881 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99873 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47119 * 90.00231 * 15 13 11 17 17 H 1.48499 * 109.46728 * 209.99683 * 15 13 11 18 18 H 1.48491 * 109.47162 * 329.99293 * 15 13 11 19 19 C 1.41434 * 107.11353 * 0.25806 * 4 3 2 20 20 N 1.30451 * 108.03753 * 359.55491 * 19 4 3 21 21 H 1.09002 * 109.46938 * 90.00459 * 1 2 3 22 22 H 1.09003 * 109.47485 * 210.00649 * 1 2 3 23 23 H 1.08999 * 109.47466 * 330.00792 * 1 2 3 24 24 H 1.08000 * 126.31402 * 0.02562 * 3 2 1 25 25 H 1.07994 * 119.99739 * 314.60037 * 5 4 3 26 26 H 1.08007 * 119.99704 * 167.22246 * 6 5 4 27 27 H 0.97000 * 120.00303 * 359.97438 * 9 7 6 28 28 H 1.09010 * 109.46792 * 299.99626 * 10 9 7 29 29 H 1.08998 * 109.47488 * 59.99360 * 10 9 7 30 30 H 0.97000 * 119.99980 * 180.02562 * 14 13 11 31 31 H 1.08001 * 125.98316 * 179.70480 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2501 1.0908 0.0000 4 6 3.5624 0.6548 0.0006 5 6 4.7637 1.5014 0.0003 6 6 5.7884 1.2198 0.8335 7 6 5.6095 0.2890 1.8885 8 8 4.5028 -0.1618 2.1212 9 7 6.6644 -0.0964 2.6333 10 6 6.4796 -1.0583 3.7228 11 6 7.8041 -1.3192 4.3926 12 1 8.6945 -0.8183 4.0422 13 6 7.8791 -2.1967 5.4536 14 7 9.0350 -2.4247 6.0378 15 14 6.3390 -3.0625 6.0600 16 1 6.1735 -4.3461 5.3319 17 1 6.4629 -3.3315 7.5152 18 1 5.1564 -2.1984 5.8154 19 6 3.5312 -0.7592 -0.0051 20 7 2.2823 -1.1357 0.0008 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.9174 2.1183 0.0004 25 1 4.8268 2.3488 -0.6662 26 1 6.7444 1.7033 0.6963 27 1 7.5463 0.2625 2.4477 28 1 5.7775 -0.6520 4.4510 29 1 6.0862 -1.9919 3.3205 30 1 9.0878 -3.0423 6.7840 31 1 4.3910 -1.4128 -0.0107 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706376324.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:33 Heat of formation + Delta-G solvation = 41.240941 kcal Electronic energy + Delta-G solvation = -15831.147300 eV Core-core repulsion = 13114.222908 eV Total energy + Delta-G solvation = -2716.924392 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.97747 -40.41976 -36.24293 -34.86452 -34.35222 -33.45817 -30.81378 -29.68587 -27.41327 -25.12731 -23.24848 -21.89423 -21.73136 -20.43506 -18.96005 -18.00934 -17.26105 -16.80352 -16.27060 -16.04763 -15.82170 -15.20460 -14.96170 -14.69912 -14.17022 -14.00964 -13.86533 -13.52592 -13.39120 -13.00543 -12.90207 -12.72461 -11.95907 -11.65439 -11.60955 -10.92972 -10.86173 -10.47810 -10.28318 -9.70116 -8.73218 -8.41351 -6.47245 0.24036 1.10527 1.29197 1.31052 1.44388 1.78778 2.11058 2.26030 2.67984 2.81016 2.94673 3.71369 4.04888 4.27208 4.31214 4.40504 4.46145 4.67382 4.69751 4.84673 4.85207 4.96343 5.05005 5.27450 5.41956 5.63782 5.65046 5.75632 6.13477 6.26267 6.54393 6.83162 7.01887 7.17223 7.61231 8.73666 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.034002 B = 0.005892 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.290869 B = 4751.352202 C = 5394.515679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.380 5.380 3 C 0.080 3.920 4 C -0.241 4.241 5 C 0.049 3.951 6 C -0.246 4.246 7 C 0.525 3.475 8 O -0.588 6.588 9 N -0.710 5.710 10 C 0.237 3.763 11 C -0.545 4.545 12 H 0.060 0.940 13 C 0.028 3.972 14 N -0.931 5.931 15 Si 0.936 3.064 16 H -0.267 1.267 17 H -0.270 1.270 18 H -0.266 1.266 19 C 0.099 3.901 20 N -0.355 5.355 21 H 0.093 0.907 22 H 0.078 0.922 23 H 0.116 0.884 24 H 0.221 0.779 25 H 0.179 0.821 26 H 0.160 0.840 27 H 0.406 0.594 28 H 0.005 0.995 29 H 0.004 0.996 30 H 0.272 0.728 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.605 11.065 -15.073 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.160 5.160 3 C -0.068 4.068 4 C -0.253 4.253 5 C 0.028 3.972 6 C -0.267 4.267 7 C 0.317 3.683 8 O -0.471 6.471 9 N -0.359 5.359 10 C 0.112 3.888 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.172 4.172 14 N -0.570 5.570 15 Si 0.760 3.240 16 H -0.192 1.192 17 H -0.195 1.195 18 H -0.191 1.191 19 C -0.087 4.087 20 N -0.177 5.177 21 H 0.112 0.888 22 H 0.097 0.903 23 H 0.134 0.866 24 H 0.238 0.762 25 H 0.196 0.804 26 H 0.177 0.823 27 H 0.241 0.759 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.082 0.918 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.256 9.614 -14.724 23.948 hybrid contribution 0.870 -0.146 0.825 1.208 sum -15.386 9.467 -13.900 22.794 Atomic orbital electron populations 1.22177 0.72072 1.05575 1.04764 1.48508 1.07997 1.03375 1.56147 1.23557 0.89630 0.94611 0.98996 1.19646 0.94320 0.92677 1.18651 1.22055 0.88168 0.94050 0.92942 1.22105 1.02690 1.04018 0.97922 1.18094 0.83909 0.82319 0.83972 1.90813 1.25496 1.58593 1.72245 1.46086 1.11392 1.44877 1.33556 1.18951 0.95634 0.88229 0.85941 1.21341 0.93957 1.26850 1.16173 0.92201 1.25564 0.98915 0.96687 0.96040 1.69977 1.26155 1.36836 1.24011 0.85879 0.80186 0.79577 0.78329 1.19188 1.19479 1.19077 1.23693 0.94122 0.95374 0.95556 1.76944 1.02884 1.10124 1.27732 0.88809 0.90279 0.86586 0.76230 0.80419 0.82287 0.75897 0.97691 0.97761 0.91836 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 11.44 127.77 1.46 2.82 16 2 N -0.38 -9.73 3.98 -367.46 -1.46 -11.20 16 3 C 0.08 1.78 11.52 84.31 0.97 2.75 16 4 C -0.24 -6.73 4.45 -20.19 -0.09 -6.82 16 5 C 0.05 1.06 10.13 23.82 0.24 1.30 16 6 C -0.25 -6.51 9.81 22.42 0.22 -6.29 16 7 C 0.52 20.35 7.17 85.13 0.61 20.96 16 8 O -0.59 -27.06 12.40 -4.47 -0.06 -27.12 16 9 N -0.71 -29.99 5.54 -475.70 -2.63 -32.62 16 10 C 0.24 12.28 4.50 85.63 0.38 12.66 16 11 C -0.55 -31.32 9.83 25.60 0.25 -31.07 16 12 H 0.06 3.59 7.84 -2.91 -0.02 3.56 16 13 C 0.03 1.65 5.47 84.66 0.46 2.11 16 14 N -0.93 -56.96 13.96 21.45 0.30 -56.66 16 15 Si 0.94 46.16 27.47 68.60 1.88 48.04 16 16 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.27 -13.24 6.54 99.48 0.65 -12.59 16 19 C 0.10 3.46 9.14 85.69 0.78 4.24 16 20 N -0.36 -12.49 12.49 -56.17 -0.70 -13.19 16 21 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.22 2.47 8.06 -2.91 -0.02 2.44 16 25 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 26 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 27 H 0.41 15.06 8.28 -92.71 -0.77 14.30 16 28 H 0.01 0.29 7.20 -2.38 -0.02 0.27 16 29 H 0.00 0.24 7.57 -2.39 -0.02 0.23 16 30 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.16 5.71 7.95 -2.91 -0.02 5.69 16 Total: -1.00 -80.26 275.79 2.94 -77.32 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.32 Total: 12.75 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 5.30 Total: 2.67 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -4.50 Total: -113.66 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.06 Total: -27.12 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.88 Total: 48.04 kcal Total: -80.26 2.94 -77.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706376324.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.562 kcal (2) G-P(sol) polarization free energy of solvation -80.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds