Wall clock time and date at job start Sun Mar 29 2020 21:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99579 * 2 1 4 4 C 1.52995 * 109.47272 * 125.00201 * 3 2 1 5 5 C 1.50699 * 109.47267 * 179.97438 * 4 3 2 6 6 O 1.21304 * 120.00152 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99798 * 180.27214 * 5 4 3 8 8 C 1.40595 * 119.99764 * 179.72414 * 7 5 4 9 9 C 1.40646 * 126.08311 * 359.69131 * 8 7 5 10 10 N 1.30914 * 108.38784 * 179.87895 * 9 8 7 11 11 N 1.40065 * 108.40439 * 0.38138 * 10 9 8 12 12 C 1.37327 * 126.06489 * 179.73676 * 11 10 9 13 13 H 1.08003 * 119.99416 * 174.15969 * 12 11 10 14 14 C 1.38979 * 120.00372 * 354.16004 * 12 11 10 15 15 N 1.31300 * 119.99795 * 5.93274 * 14 12 11 16 16 Si 1.86793 * 120.00339 * 185.93961 * 14 12 11 17 17 H 1.48508 * 109.47464 * 94.97550 * 16 14 12 18 18 H 1.48497 * 109.47452 * 214.97875 * 16 14 12 19 19 H 1.48508 * 109.47127 * 334.97858 * 16 14 12 20 20 C 1.35686 * 126.08204 * 180.02562 * 8 7 5 21 21 H 1.08002 * 120.00278 * 0.02562 * 1 2 3 22 22 H 1.07995 * 119.99645 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.99595 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47550 * 4.99428 * 3 2 1 25 25 H 1.09007 * 109.46919 * 244.99967 * 3 2 1 26 26 H 1.09004 * 109.47302 * 59.99445 * 4 3 2 27 27 H 1.08998 * 109.47099 * 300.00029 * 4 3 2 28 28 H 0.97001 * 120.00137 * 359.73317 * 7 5 4 29 29 H 1.07998 * 125.80732 * 0.02562 * 9 8 7 30 30 H 0.96997 * 119.99732 * 180.02562 * 15 14 12 31 31 H 1.07995 * 126.24184 * 359.92839 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.7889 2.6381 1.1812 6 8 3.5709 3.4643 0.3202 7 7 4.7096 2.8847 2.1340 8 6 5.4170 4.0996 2.1303 9 6 5.2717 5.1399 1.1950 10 7 6.0942 6.1052 1.5198 11 7 6.8006 5.7175 2.6655 12 6 7.7606 6.4566 3.3121 13 1 8.1777 6.1032 4.2435 14 6 8.1955 7.6591 2.7678 15 7 7.6084 8.1466 1.6993 16 14 9.6154 8.5819 3.5562 17 1 10.8822 8.2210 2.8702 18 1 9.3850 10.0437 3.4331 19 1 9.7081 8.2146 4.9921 20 6 6.3659 4.4746 3.0248 21 1 -0.5401 0.9353 -0.0004 22 1 -0.5399 -0.9353 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1317 0.0895 25 1 2.6213 1.4027 -0.9314 26 1 3.7400 0.5067 1.0920 27 1 2.4773 1.2357 2.1129 28 1 4.8843 2.2238 2.8223 29 1 4.5949 5.1430 0.3534 30 1 7.9122 8.9857 1.3193 31 1 6.7133 3.8955 3.8676 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726533950.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:56 Heat of formation + Delta-G solvation = 57.449477 kcal Electronic energy + Delta-G solvation = -15575.083135 eV Core-core repulsion = 12858.861597 eV Total energy + Delta-G solvation = -2716.221537 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88123 -38.62761 -35.41530 -34.12157 -33.11373 -30.82253 -30.10236 -27.71909 -25.15156 -23.92195 -20.97209 -20.09213 -19.81295 -19.33732 -17.46570 -16.31836 -15.73645 -15.42070 -15.22918 -14.66813 -14.09873 -13.68020 -13.46329 -13.00102 -12.83927 -12.46903 -12.06726 -11.66939 -11.38766 -11.25845 -11.07258 -11.01997 -10.90499 -10.51405 -10.10125 -9.49173 -9.14046 -9.07168 -8.76944 -8.02706 -6.66122 -6.54023 -4.20510 2.16313 2.87917 3.05930 3.07652 3.11577 3.67764 3.71261 3.92284 4.45666 4.72830 4.88738 5.00517 5.03262 5.14462 5.27552 5.41723 5.66353 5.76431 5.97052 6.18733 6.27195 6.50386 6.52734 6.68363 6.94581 6.99883 7.17221 7.28292 7.88943 8.23145 8.33443 8.67154 8.92640 9.41082 9.70154 10.42385 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.096552 B = 0.004282 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 289.928828 B = 6537.056044 C = 6771.255247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.080 4.080 4 C -0.130 4.130 5 C 0.495 3.505 6 O -0.538 6.538 7 N -0.627 5.627 8 C -0.060 4.060 9 C -0.034 4.034 10 N -0.261 5.261 11 N -0.144 5.144 12 C -0.325 4.325 13 H 0.116 0.884 14 C 0.046 3.954 15 N -0.770 5.770 16 Si 0.934 3.066 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.084 4.084 21 H 0.097 0.903 22 H 0.094 0.906 23 H 0.107 0.893 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.396 0.604 29 H 0.176 0.824 30 H 0.274 0.726 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 -12.617 1.636 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.118 4.118 4 C -0.171 4.171 5 C 0.282 3.718 6 O -0.416 6.416 7 N -0.270 5.270 8 C -0.166 4.166 9 C -0.210 4.210 10 N -0.093 5.093 11 N 0.088 4.912 12 C -0.457 4.457 13 H 0.133 0.867 14 C -0.171 4.171 15 N -0.397 5.397 16 Si 0.758 3.242 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.188 1.188 20 C -0.235 4.235 21 H 0.115 0.885 22 H 0.113 0.887 23 H 0.125 0.875 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.229 0.771 29 H 0.193 0.807 30 H 0.085 0.915 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.905 -10.649 0.562 12.189 hybrid contribution 0.450 -0.906 1.046 1.455 sum -5.455 -11.554 1.608 12.878 Atomic orbital electron populations 1.23862 0.96024 1.01746 1.01895 1.23025 0.96070 0.98505 0.99266 1.20501 0.97886 0.95069 0.98299 1.21542 0.98823 0.95923 1.00770 1.20479 0.80509 0.88975 0.81860 1.90591 1.65845 1.47798 1.37360 1.42581 1.37922 1.17364 1.29113 1.17323 1.05138 0.90462 1.03642 1.24112 1.02977 0.92110 1.01772 1.78239 1.09220 1.20683 1.01121 1.44543 1.22159 1.08275 1.16228 1.19866 1.15374 1.03403 1.07032 0.86654 1.25640 0.98512 0.97002 0.95923 1.70230 1.35001 1.17320 1.17129 0.85817 0.80109 0.78682 0.79552 1.19663 1.20118 1.18807 1.21272 1.05699 0.91866 1.04676 0.88508 0.88728 0.87471 0.90641 0.90098 0.89249 0.89285 0.77074 0.80741 0.91507 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 14.32 29.01 0.42 -1.36 16 2 C -0.15 -1.43 9.52 -36.03 -0.34 -1.78 16 3 C -0.08 -0.94 4.95 -27.89 -0.14 -1.08 16 4 C -0.13 -1.51 5.68 -27.89 -0.16 -1.67 16 5 C 0.50 8.57 7.80 -10.99 -0.09 8.48 16 6 O -0.54 -11.59 13.13 5.54 0.07 -11.52 16 7 N -0.63 -11.19 5.47 -10.00 -0.05 -11.25 16 8 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16 9 C -0.03 -0.92 10.85 -17.03 -0.18 -1.11 16 10 N -0.26 -7.75 10.42 30.80 0.32 -7.43 16 11 N -0.14 -4.03 3.74 -11.41 -0.04 -4.07 16 12 C -0.32 -8.71 10.24 -14.82 -0.15 -8.86 16 13 H 0.12 2.76 7.84 -52.48 -0.41 2.35 16 14 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 15 N -0.77 -21.81 11.84 55.49 0.66 -21.15 16 16 Si 0.93 19.11 29.55 -169.99 -5.02 14.09 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 20 C -0.08 -2.02 11.49 -16.39 -0.19 -2.20 16 21 H 0.10 0.87 7.84 -52.49 -0.41 0.46 16 22 H 0.09 0.70 8.06 -52.49 -0.42 0.28 16 23 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 24 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 25 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.40 5.36 8.83 -40.82 -0.36 5.00 16 29 H 0.18 4.67 5.92 -52.49 -0.31 4.36 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 277.75 15.07 4.19 4.19 Total: -1.00 -33.50 277.75 -4.96 -38.46 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.57 Total: 9.13 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.51 Total: -10.45 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.88 Total: -43.90 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.07 Total: -11.52 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.50 -4.96 -38.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726533950.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.910 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds