Wall clock time and date at job start Sun Mar 29 2020 21:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99579 * 2 1 4 4 C 1.52995 * 109.47272 * 125.00201 * 3 2 1 5 5 C 1.50699 * 109.47267 * 179.97438 * 4 3 2 6 6 O 1.21304 * 120.00152 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99798 * 180.27214 * 5 4 3 8 8 C 1.40595 * 119.99764 * 179.72414 * 7 5 4 9 9 C 1.40646 * 126.08311 * 359.69131 * 8 7 5 10 10 N 1.30914 * 108.38784 * 179.87895 * 9 8 7 11 11 N 1.40065 * 108.40439 * 0.38138 * 10 9 8 12 12 C 1.37327 * 126.06489 * 179.73676 * 11 10 9 13 13 H 1.08003 * 119.99416 * 174.15969 * 12 11 10 14 14 C 1.38979 * 120.00372 * 354.16004 * 12 11 10 15 15 N 1.31300 * 119.99795 * 5.93274 * 14 12 11 16 16 Si 1.86793 * 120.00339 * 185.93961 * 14 12 11 17 17 H 1.48508 * 109.47464 * 94.97550 * 16 14 12 18 18 H 1.48497 * 109.47452 * 214.97875 * 16 14 12 19 19 H 1.48508 * 109.47127 * 334.97858 * 16 14 12 20 20 C 1.35686 * 126.08204 * 180.02562 * 8 7 5 21 21 H 1.08002 * 120.00278 * 0.02562 * 1 2 3 22 22 H 1.07995 * 119.99645 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.99595 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47550 * 4.99428 * 3 2 1 25 25 H 1.09007 * 109.46919 * 244.99967 * 3 2 1 26 26 H 1.09004 * 109.47302 * 59.99445 * 4 3 2 27 27 H 1.08998 * 109.47099 * 300.00029 * 4 3 2 28 28 H 0.97001 * 120.00137 * 359.73317 * 7 5 4 29 29 H 1.07998 * 125.80732 * 0.02562 * 9 8 7 30 30 H 0.96997 * 119.99732 * 180.02562 * 15 14 12 31 31 H 1.07995 * 126.24184 * 359.92839 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.7889 2.6381 1.1812 6 8 3.5709 3.4643 0.3202 7 7 4.7096 2.8847 2.1340 8 6 5.4170 4.0996 2.1303 9 6 5.2717 5.1399 1.1950 10 7 6.0942 6.1052 1.5198 11 7 6.8006 5.7175 2.6655 12 6 7.7606 6.4566 3.3121 13 1 8.1777 6.1032 4.2435 14 6 8.1955 7.6591 2.7678 15 7 7.6084 8.1466 1.6993 16 14 9.6154 8.5819 3.5562 17 1 10.8822 8.2210 2.8702 18 1 9.3850 10.0437 3.4331 19 1 9.7081 8.2146 4.9921 20 6 6.3659 4.4746 3.0248 21 1 -0.5401 0.9353 -0.0004 22 1 -0.5399 -0.9353 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1317 0.0895 25 1 2.6213 1.4027 -0.9314 26 1 3.7400 0.5067 1.0920 27 1 2.4773 1.2357 2.1129 28 1 4.8843 2.2238 2.8223 29 1 4.5949 5.1430 0.3534 30 1 7.9122 8.9857 1.3193 31 1 6.7133 3.8955 3.8676 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726533950.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:55 Heat of formation + Delta-G solvation = 34.172224 kcal Electronic energy + Delta-G solvation = -15576.092512 eV Core-core repulsion = 12858.861597 eV Total energy + Delta-G solvation = -2717.230915 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.68568 -40.24575 -36.37433 -35.79458 -34.93336 -32.33168 -31.61870 -29.50958 -26.93776 -25.19300 -22.84419 -21.65180 -21.13145 -20.59453 -19.27992 -17.76646 -17.36716 -16.93179 -16.70770 -15.80254 -15.71368 -15.21064 -14.98294 -14.78605 -14.27559 -13.52386 -13.43932 -13.28820 -13.04530 -12.89834 -12.79513 -12.06382 -11.94501 -11.83867 -11.80444 -11.00770 -10.82698 -10.63768 -10.16258 -10.09716 -8.50939 -8.47057 -6.24182 1.23702 1.39840 1.44483 1.56539 1.58514 1.88902 2.08523 2.39501 2.54668 2.95403 3.08286 3.87131 4.03713 4.24490 4.42168 4.48598 4.52017 4.63055 4.75761 4.99159 5.01297 5.11802 5.13151 5.28364 5.30894 5.53029 5.79769 5.96755 5.97168 6.33388 6.74553 6.82652 7.45025 7.50561 7.69623 8.52653 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.096552 B = 0.004282 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 289.928828 B = 6537.056044 C = 6771.255247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C -0.080 4.080 4 C -0.114 4.114 5 C 0.490 3.510 6 O -0.585 6.585 7 N -0.619 5.619 8 C -0.046 4.046 9 C -0.063 4.063 10 N -0.313 5.313 11 N -0.170 5.170 12 C -0.356 4.356 13 H 0.141 0.859 14 C -0.008 4.008 15 N -0.826 5.826 16 Si 1.021 2.979 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.242 1.242 20 C -0.081 4.081 21 H 0.089 0.911 22 H 0.115 0.885 23 H 0.130 0.870 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.421 0.579 29 H 0.166 0.834 30 H 0.276 0.724 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 -15.031 3.640 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C -0.118 4.118 4 C -0.154 4.154 5 C 0.279 3.721 6 O -0.466 6.466 7 N -0.265 5.265 8 C -0.152 4.152 9 C -0.238 4.238 10 N -0.145 5.145 11 N 0.061 4.939 12 C -0.487 4.487 13 H 0.159 0.841 14 C -0.219 4.219 15 N -0.454 5.454 16 Si 0.839 3.161 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.165 1.165 20 C -0.231 4.231 21 H 0.107 0.893 22 H 0.133 0.867 23 H 0.148 0.852 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.142 0.858 27 H 0.136 0.864 28 H 0.258 0.742 29 H 0.182 0.818 30 H 0.086 0.914 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.513 -13.132 2.596 14.477 hybrid contribution 0.181 -0.275 0.381 0.503 sum -5.332 -13.407 2.977 14.733 Atomic orbital electron populations 1.24044 0.96066 1.02420 1.00777 1.22983 0.96141 0.97895 1.00175 1.20457 0.97631 0.95978 0.97759 1.21571 0.98873 0.92973 1.01945 1.21665 0.79690 0.90333 0.80364 1.90584 1.66996 1.49870 1.39113 1.42582 1.37569 1.16003 1.30319 1.17430 1.04481 0.91517 1.01783 1.24159 1.03326 0.93559 1.02798 1.78131 1.10760 1.22562 1.03028 1.44853 1.22944 1.09811 1.16314 1.20633 1.15610 1.04202 1.08210 0.84127 1.26910 1.01204 0.97674 0.96113 1.70414 1.37403 1.18142 1.19450 0.84559 0.75561 0.76536 0.79407 1.19175 1.20183 1.16461 1.22033 1.04792 0.90931 1.05381 0.89275 0.86713 0.85227 0.92733 0.91845 0.85785 0.86359 0.74151 0.81753 0.91431 0.79383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.05 14.32 67.77 0.97 -2.08 16 2 C -0.15 -2.51 9.52 25.64 0.24 -2.26 16 3 C -0.08 -1.78 4.95 29.85 0.15 -1.64 16 4 C -0.11 -2.29 5.68 29.85 0.17 -2.12 16 5 C 0.49 16.37 7.80 87.66 0.68 17.06 16 6 O -0.59 -25.79 13.13 -3.10 -0.04 -25.83 16 7 N -0.62 -20.89 5.47 -303.92 -1.66 -22.55 16 8 C -0.05 -2.14 6.90 37.73 0.26 -1.88 16 9 C -0.06 -3.54 10.85 85.42 0.93 -2.62 16 10 N -0.31 -19.32 10.42 -56.47 -0.59 -19.91 16 11 N -0.17 -9.60 3.74 -190.02 -0.71 -10.31 16 12 C -0.36 -19.07 10.24 84.01 0.86 -18.21 16 13 H 0.14 6.51 7.84 -2.91 -0.02 6.49 16 14 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 15 N -0.83 -48.51 11.84 21.66 0.26 -48.26 16 16 Si 1.02 38.98 29.55 68.60 2.03 41.00 16 17 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 18 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 19 H -0.24 -8.27 7.11 99.48 0.71 -7.56 16 20 C -0.08 -3.79 11.49 83.38 0.96 -2.83 16 21 H 0.09 1.50 7.84 -2.91 -0.02 1.48 16 22 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 23 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 24 H 0.05 1.41 7.75 -2.39 -0.02 1.40 16 25 H 0.06 1.61 8.10 -2.38 -0.02 1.59 16 26 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.42 9.87 8.83 -92.71 -0.82 9.06 16 29 H 0.17 9.37 5.92 -2.91 -0.02 9.35 16 30 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.19 6.84 8.06 -2.91 -0.02 6.82 16 Total: -1.00 -77.54 277.75 5.29 -72.25 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.32 Total: 30.13 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 5.69 Total: -16.52 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -2.70 Total: -101.03 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.04 Total: -25.83 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.00 kcal Total: -77.54 5.29 -72.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726533950.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.422 kcal (2) G-P(sol) polarization free energy of solvation -77.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds