Wall clock time and date at job start Sun Mar 29 2020 21:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33008 * 119.99902 * 2 1 4 4 C 1.47063 * 120.00155 * 0.02562 * 3 2 1 5 5 O 1.21634 * 119.99890 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00251 * 179.97438 * 4 3 2 7 7 C 1.40060 * 120.00181 * 179.97438 * 6 4 3 8 8 C 1.40425 * 125.97837 * 0.02562 * 7 6 4 9 9 C 1.35239 * 107.86772 * 179.71619 * 8 7 6 10 10 N 1.34962 * 107.86411 * 0.42152 * 9 8 7 11 11 C 1.46500 * 125.97410 * 179.83729 * 10 9 8 12 12 C 1.50706 * 109.47299 * 124.71196 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 N 1.31239 * 125.97748 * 179.97438 * 7 6 4 21 21 H 1.08996 * 109.47187 * 299.99409 * 1 2 3 22 22 H 1.08999 * 109.46878 * 59.99630 * 1 2 3 23 23 H 1.09007 * 109.47101 * 179.97438 * 1 2 3 24 24 H 1.07998 * 119.99527 * 180.02562 * 2 1 3 25 25 H 1.08004 * 119.99766 * 179.97438 * 3 2 1 26 26 H 0.96999 * 119.99333 * 359.97438 * 6 4 3 27 27 H 1.08003 * 126.06238 * 0.02562 * 8 7 6 28 28 H 1.08001 * 126.06343 * 180.28980 * 9 8 7 29 29 H 1.09004 * 109.47078 * 4.71958 * 11 10 9 30 30 H 1.08993 * 109.47364 * 244.71729 * 11 10 9 31 31 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1519 0.0000 4 6 1.4368 2.4255 0.0006 5 8 0.2204 2.4255 0.0015 6 7 2.1106 3.5928 0.0011 7 6 1.4103 4.8057 0.0011 8 6 0.0137 4.9520 0.0011 9 6 -0.2649 6.2753 0.0075 10 7 0.9068 6.9451 0.0019 11 6 1.0655 8.4015 0.0025 12 6 1.9304 8.8122 1.1663 13 1 2.3229 8.0632 1.8380 14 6 2.2205 10.1440 1.3735 15 7 1.7469 11.0556 0.5523 16 14 3.2932 10.6530 2.8156 17 1 2.4373 10.9174 4.0000 18 1 4.2501 9.5618 3.1301 19 1 4.0449 11.8842 2.4633 20 7 1.9446 6.0044 0.0020 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 2.0470 -0.9353 -0.0004 25 1 3.2521 1.1519 0.0004 26 1 3.0806 3.5927 0.0015 27 1 -0.7095 4.1499 0.0015 28 1 -1.2502 6.7176 0.0136 29 1 0.0871 8.8736 0.0926 30 1 1.5362 8.7161 -0.9289 31 1 1.1901 10.7914 -0.1967 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735453205.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:50 Heat of formation + Delta-G solvation = 60.166635 kcal Electronic energy + Delta-G solvation = -15682.702509 eV Core-core repulsion = 12966.598796 eV Total energy + Delta-G solvation = -2716.103712 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73737 -39.40202 -35.15134 -34.07691 -33.65647 -30.93893 -29.38344 -27.94836 -26.18660 -23.58905 -22.48407 -20.93206 -19.89268 -19.08824 -17.18432 -16.84422 -16.59239 -15.28809 -15.02528 -14.70345 -14.13108 -13.81656 -13.69520 -13.22026 -12.98359 -12.41631 -12.33815 -12.14869 -11.85899 -11.72942 -11.15118 -10.80072 -10.41077 -10.17578 -9.98100 -9.62456 -9.40534 -8.98764 -8.57857 -8.18289 -7.49607 -6.58258 -4.32258 1.21944 2.64099 2.82346 3.10688 3.36774 3.40971 3.57624 3.79104 3.85422 4.40769 4.64566 4.80495 5.11779 5.15904 5.43079 5.49336 5.72235 5.72469 5.89240 6.15720 6.20751 6.37724 6.42742 6.55712 6.63626 6.75535 7.38115 7.50973 7.72570 7.84141 8.28388 8.34986 8.55509 8.62978 9.36094 10.79390 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.050451 B = 0.004802 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.860399 B = 5829.908662 C = 6171.932581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.060 4.060 3 C -0.224 4.224 4 C 0.547 3.453 5 O -0.519 6.519 6 N -0.628 5.628 7 C 0.259 3.741 8 C -0.285 4.285 9 C 0.049 3.951 10 N -0.318 5.318 11 C 0.249 3.751 12 C -0.608 4.608 13 H 0.064 0.936 14 C 0.023 3.977 15 N -0.906 5.906 16 Si 1.080 2.920 17 H -0.286 1.286 18 H -0.286 1.286 19 H -0.282 1.282 20 N -0.303 5.303 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.051 0.949 24 H 0.126 0.874 25 H 0.129 0.871 26 H 0.411 0.589 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 -18.263 -1.385 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.079 4.079 3 C -0.245 4.245 4 C 0.337 3.663 5 O -0.396 6.396 6 N -0.275 5.275 7 C 0.006 3.994 8 C -0.316 4.316 9 C -0.100 4.100 10 N -0.099 5.099 11 C 0.131 3.869 12 C -0.646 4.646 13 H 0.082 0.918 14 C -0.182 4.182 15 N -0.541 5.541 16 Si 0.907 3.093 17 H -0.212 1.212 18 H -0.212 1.212 19 H -0.207 1.207 20 N -0.134 5.134 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.070 0.930 24 H 0.144 0.856 25 H 0.147 0.853 26 H 0.246 0.754 27 H 0.179 0.821 28 H 0.185 0.815 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.204 -16.145 -0.647 16.159 hybrid contribution -0.777 -1.676 -0.773 2.002 sum -0.573 -17.820 -1.421 17.886 Atomic orbital electron populations 1.21112 0.91769 1.01042 1.04547 1.23768 0.97516 0.97018 0.89631 1.22491 1.00378 0.91887 1.09718 1.18611 0.87496 0.83555 0.76671 1.90717 1.13536 1.86961 1.48346 1.42414 1.10106 1.02512 1.72475 1.19131 0.91244 0.85946 1.03104 1.21546 0.94198 0.96050 1.19817 1.22567 0.92314 0.92538 1.02618 1.48778 1.01742 1.07293 1.52125 1.19761 0.98727 0.69183 0.99259 1.22138 1.34453 0.95609 1.12405 0.91803 1.25929 0.97960 0.92172 1.02126 1.70821 1.32202 1.36048 1.15049 0.83381 0.75844 0.75779 0.74331 1.21203 1.21241 1.20700 1.77361 1.12767 0.95261 1.28039 0.89762 0.89803 0.93038 0.85610 0.85294 0.75366 0.82100 0.81535 0.93632 0.94776 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.45 36.01 0.30 -0.95 16 2 C -0.06 -0.51 10.35 -36.12 -0.37 -0.88 16 3 C -0.22 -2.24 10.03 -37.82 -0.38 -2.62 16 4 C 0.55 7.92 7.70 -12.68 -0.10 7.82 16 5 O -0.52 -8.69 10.19 5.25 0.05 -8.64 16 6 N -0.63 -9.98 5.44 -12.22 -0.07 -10.04 16 7 C 0.26 5.32 8.11 -154.46 -1.25 4.07 16 8 C -0.28 -5.72 9.60 -39.83 -0.38 -6.11 16 9 C 0.05 1.00 11.43 -17.24 -0.20 0.81 16 10 N -0.32 -7.55 3.67 -62.56 -0.23 -7.78 16 11 C 0.25 6.38 5.57 -5.19 -0.03 6.35 16 12 C -0.61 -17.27 9.24 -34.44 -0.32 -17.59 16 13 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 14 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 15 N -0.91 -26.51 13.65 55.43 0.76 -25.76 16 16 Si 1.08 25.10 29.90 -169.99 -5.08 20.02 16 17 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 N -0.30 -7.17 12.42 31.42 0.39 -6.78 16 21 H 0.08 0.97 7.22 -51.93 -0.37 0.59 16 22 H 0.08 0.95 7.22 -51.93 -0.38 0.58 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 25 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 26 H 0.41 5.35 8.81 -40.82 -0.36 4.99 16 27 H 0.16 3.09 5.91 -52.48 -0.31 2.78 16 28 H 0.17 2.76 8.06 -52.49 -0.42 2.33 16 29 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 30 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 31 H 0.27 7.65 7.22 -40.82 -0.29 7.36 16 LS Contribution 274.98 15.07 4.14 4.14 Total: -1.00 -33.14 274.98 -6.30 -39.43 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.44 Total: 3.96 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.82 Total: -8.56 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.85 Total: -50.36 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.05 Total: -8.64 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.14 -6.30 -39.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735453205.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.598 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds