Wall clock time and date at job start Sun Mar 29 2020 21:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33008 * 119.99902 * 2 1 4 4 C 1.47063 * 120.00155 * 0.02562 * 3 2 1 5 5 O 1.21634 * 119.99890 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00251 * 179.97438 * 4 3 2 7 7 C 1.40060 * 120.00181 * 179.97438 * 6 4 3 8 8 C 1.40425 * 125.97837 * 0.02562 * 7 6 4 9 9 C 1.35239 * 107.86772 * 179.71619 * 8 7 6 10 10 N 1.34962 * 107.86411 * 0.42152 * 9 8 7 11 11 C 1.46500 * 125.97410 * 179.83729 * 10 9 8 12 12 C 1.50706 * 109.47299 * 124.71196 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 N 1.31239 * 125.97748 * 179.97438 * 7 6 4 21 21 H 1.08996 * 109.47187 * 299.99409 * 1 2 3 22 22 H 1.08999 * 109.46878 * 59.99630 * 1 2 3 23 23 H 1.09007 * 109.47101 * 179.97438 * 1 2 3 24 24 H 1.07998 * 119.99527 * 180.02562 * 2 1 3 25 25 H 1.08004 * 119.99766 * 179.97438 * 3 2 1 26 26 H 0.96999 * 119.99333 * 359.97438 * 6 4 3 27 27 H 1.08003 * 126.06238 * 0.02562 * 8 7 6 28 28 H 1.08001 * 126.06343 * 180.28980 * 9 8 7 29 29 H 1.09004 * 109.47078 * 4.71958 * 11 10 9 30 30 H 1.08993 * 109.47364 * 244.71729 * 11 10 9 31 31 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1519 0.0000 4 6 1.4368 2.4255 0.0006 5 8 0.2204 2.4255 0.0015 6 7 2.1106 3.5928 0.0011 7 6 1.4103 4.8057 0.0011 8 6 0.0137 4.9520 0.0011 9 6 -0.2649 6.2753 0.0075 10 7 0.9068 6.9451 0.0019 11 6 1.0655 8.4015 0.0025 12 6 1.9304 8.8122 1.1663 13 1 2.3229 8.0632 1.8380 14 6 2.2205 10.1440 1.3735 15 7 1.7469 11.0556 0.5523 16 14 3.2932 10.6530 2.8156 17 1 2.4373 10.9174 4.0000 18 1 4.2501 9.5618 3.1301 19 1 4.0449 11.8842 2.4633 20 7 1.9446 6.0044 0.0020 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 2.0470 -0.9353 -0.0004 25 1 3.2521 1.1519 0.0004 26 1 3.0806 3.5927 0.0015 27 1 -0.7095 4.1499 0.0015 28 1 -1.2502 6.7176 0.0136 29 1 0.0871 8.8736 0.0926 30 1 1.5362 8.7161 -0.9289 31 1 1.1901 10.7914 -0.1967 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735453205.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:50 Heat of formation + Delta-G solvation = 38.289070 kcal Electronic energy + Delta-G solvation = -15683.651191 eV Core-core repulsion = 12966.598796 eV Total energy + Delta-G solvation = -2717.052395 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.28787 -40.68109 -36.58005 -35.58913 -34.98279 -32.73522 -31.04433 -29.01173 -27.92474 -25.31343 -23.91613 -22.45300 -21.37013 -20.23838 -19.24187 -18.21108 -17.81629 -16.86801 -16.44666 -15.82198 -15.62444 -15.58812 -15.05663 -14.71276 -14.25828 -13.95077 -13.79928 -13.69531 -13.25643 -12.97676 -12.60083 -12.53487 -11.98367 -11.96913 -11.63018 -11.01277 -10.70351 -10.57433 -10.40425 -9.82998 -9.18518 -8.78946 -6.57688 0.33319 1.06110 1.35446 1.49959 1.57825 1.76995 1.78220 2.36691 2.46650 2.48801 2.99819 3.66449 3.92749 4.12321 4.13362 4.46763 4.54709 4.69794 4.77093 4.81494 4.84538 4.88724 5.04556 5.21574 5.48321 5.53640 5.62869 5.82773 5.93078 6.24660 6.28689 6.40546 6.95890 7.13587 7.18378 8.56769 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.050451 B = 0.004802 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.860399 B = 5829.908662 C = 6171.932581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.037 4.037 3 C -0.237 4.237 4 C 0.540 3.460 5 O -0.547 6.547 6 N -0.626 5.626 7 C 0.267 3.733 8 C -0.291 4.291 9 C 0.054 3.946 10 N -0.344 5.344 11 C 0.259 3.741 12 C -0.623 4.623 13 H 0.044 0.956 14 C -0.018 4.018 15 N -0.923 5.923 16 Si 1.123 2.877 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.274 1.274 20 N -0.349 5.349 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.170 0.830 25 H 0.162 0.838 26 H 0.423 0.577 27 H 0.171 0.829 28 H 0.202 0.798 29 H 0.054 0.946 30 H 0.016 0.984 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 -20.305 -0.766 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.056 4.056 3 C -0.258 4.258 4 C 0.332 3.668 5 O -0.425 6.425 6 N -0.275 5.275 7 C 0.012 3.988 8 C -0.322 4.322 9 C -0.095 4.095 10 N -0.126 5.126 11 C 0.140 3.860 12 C -0.661 4.661 13 H 0.062 0.938 14 C -0.218 4.218 15 N -0.559 5.559 16 Si 0.944 3.056 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.199 1.199 20 N -0.180 5.180 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.188 0.812 25 H 0.180 0.820 26 H 0.261 0.739 27 H 0.188 0.812 28 H 0.218 0.782 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.694 -18.227 -0.043 18.240 hybrid contribution -1.025 -1.243 -1.014 1.904 sum -0.330 -19.470 -1.057 19.502 Atomic orbital electron populations 1.21110 0.93099 1.02156 1.02573 1.24175 0.96769 0.98238 0.86421 1.22579 1.01783 0.89591 1.11839 1.19556 0.87546 0.84324 0.75335 1.90697 1.14988 1.87318 1.49503 1.42648 1.10820 1.01372 1.72630 1.19538 0.91915 0.86681 1.00664 1.21766 0.94361 0.96200 1.19881 1.23196 0.92790 0.92645 1.00825 1.48567 1.02870 1.06666 1.54495 1.19426 0.98356 0.70854 0.97408 1.22312 1.35165 0.95540 1.13041 0.93758 1.27300 0.98403 0.92255 1.03843 1.70917 1.33060 1.36397 1.15551 0.82837 0.74827 0.75823 0.72135 1.19302 1.20568 1.19947 1.77274 1.13774 0.96341 1.30631 0.91865 0.91773 0.90357 0.81228 0.82035 0.73897 0.81168 0.78162 0.92810 0.96585 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.45 71.24 0.60 -1.72 16 2 C -0.04 -0.49 10.35 24.52 0.25 -0.24 16 3 C -0.24 -4.05 10.03 23.42 0.23 -3.81 16 4 C 0.54 14.99 7.70 86.56 0.67 15.66 16 5 O -0.55 -18.05 10.19 -4.14 -0.04 -18.09 16 6 N -0.63 -19.46 5.44 -310.81 -1.69 -21.15 16 7 C 0.27 10.99 8.11 133.36 1.08 12.07 16 8 C -0.29 -11.64 9.60 22.11 0.21 -11.43 16 9 C 0.05 2.17 11.43 83.52 0.96 3.12 16 10 N -0.34 -16.63 3.67 -351.84 -1.29 -17.92 16 11 C 0.26 13.59 5.57 85.64 0.48 14.07 16 12 C -0.62 -36.02 9.24 25.60 0.24 -35.79 16 13 H 0.04 2.69 7.81 -2.91 -0.02 2.67 16 14 C -0.02 -1.04 5.46 84.65 0.46 -0.58 16 15 N -0.92 -54.40 13.65 21.45 0.29 -54.11 16 16 Si 1.12 50.17 29.90 68.60 2.05 52.22 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 N -0.35 -16.82 12.42 -54.49 -0.68 -17.50 16 21 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 22 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 23 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 25 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 26 H 0.42 10.65 8.81 -92.71 -0.82 9.83 16 27 H 0.17 6.48 5.91 -2.91 -0.02 6.46 16 28 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 29 H 0.05 2.70 7.94 -2.39 -0.02 2.68 16 30 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 31 H 0.26 15.22 7.22 -92.71 -0.67 14.55 16 Total: -1.00 -72.86 274.98 4.26 -68.60 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.43 Total: 16.60 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 5.18 Total: -8.65 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -3.37 Total: -110.68 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.04 Total: -18.09 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.05 Total: 52.22 kcal Total: -72.86 4.26 -68.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735453205.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.892 kcal (2) G-P(sol) polarization free energy of solvation -72.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds