Wall clock time and date at job start Sun Mar 29 2020 22:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47385 * 2 1 4 4 C 1.46501 * 120.00196 * 87.91635 * 3 2 1 5 5 C 1.50692 * 109.47534 * 94.95301 * 4 3 2 6 6 H 1.08000 * 119.99944 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00206 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99972 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00040 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47048 * 90.00561 * 9 7 5 11 11 H 1.48496 * 109.47239 * 209.99937 * 9 7 5 12 12 H 1.48496 * 109.47610 * 330.00425 * 9 7 5 13 13 C 1.34782 * 120.00098 * 267.91341 * 3 2 1 14 14 O 1.21464 * 119.99513 * 5.43493 * 13 3 2 15 15 C 1.48539 * 119.99892 * 185.43880 * 13 3 2 16 16 N 1.32458 * 119.18869 * 6.35638 * 15 13 3 17 17 C 1.32113 * 120.76669 * 179.71768 * 16 15 13 18 18 C 1.38800 * 119.16308 * 0.54244 * 17 16 15 19 19 C 1.38801 * 118.50738 * 359.73177 * 18 17 16 20 20 N 1.32114 * 119.16486 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47385 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46860 * 300.00123 * 1 2 3 23 23 H 1.09000 * 109.46574 * 59.99849 * 1 2 3 24 24 H 1.09003 * 109.47584 * 239.99697 * 2 1 3 25 25 H 1.09009 * 109.47123 * 120.00010 * 2 1 3 26 26 H 1.09001 * 109.47136 * 214.95506 * 4 3 2 27 27 H 1.09000 * 109.46993 * 334.94941 * 4 3 2 28 28 H 0.96998 * 120.00078 * 179.97438 * 8 7 5 29 29 H 1.07998 * 120.41705 * 180.26905 * 17 16 15 30 30 H 1.08003 * 120.74566 * 179.74746 * 18 17 16 31 31 H 1.08002 * 120.41619 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2191 2.0872 1.2679 5 6 3.6590 1.9571 1.6928 6 1 4.3550 1.4036 1.0800 7 6 4.0879 2.5449 2.8640 8 7 3.2403 3.2186 3.6105 9 14 5.8727 2.3831 3.3911 10 1 6.6590 3.5104 2.8289 11 1 5.9557 2.4126 4.8735 12 1 6.4224 1.0978 2.8901 13 6 2.2831 2.0023 -1.1665 14 8 2.0241 1.4540 -2.2189 15 6 2.8916 3.3574 -1.1649 16 7 3.2842 3.8879 -0.0164 17 6 3.8342 5.0885 0.0205 18 6 3.9879 5.7986 -1.1621 19 6 3.5602 5.2142 -2.3462 20 7 3.0238 4.0073 -2.3114 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8901 26 1 1.9717 3.1410 1.1400 27 1 1.5742 1.6527 2.0317 28 1 3.5419 3.6318 4.4346 29 1 4.1562 5.5138 0.9595 30 1 4.4306 6.7838 -1.1611 31 1 3.6653 5.7391 -3.2842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748860814.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:41 Heat of formation + Delta-G solvation = 19.214123 kcal Electronic energy + Delta-G solvation = -16803.132057 eV Core-core repulsion = 14085.252511 eV Total energy + Delta-G solvation = -2717.879547 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.11095 -40.24928 -37.08635 -34.71872 -34.44977 -33.30393 -31.62370 -28.89734 -26.48594 -25.37062 -24.83968 -23.80966 -20.92383 -18.80655 -18.42920 -18.21060 -17.10775 -16.81458 -16.46342 -16.27779 -15.67456 -15.11878 -14.84028 -14.48278 -14.37322 -14.16248 -13.50706 -13.23951 -13.09529 -12.67858 -12.66716 -12.15728 -11.94110 -11.79829 -11.66358 -11.54827 -10.90713 -10.59221 -10.37394 -9.75327 -9.47996 -8.01669 -6.04757 -0.40264 0.31169 1.41380 1.45672 1.52868 1.72121 1.99053 2.49430 2.98174 3.16564 3.31986 3.41529 3.79219 4.00525 4.20031 4.26025 4.37961 4.45307 4.54289 4.81952 4.88585 4.98369 5.09663 5.27114 5.40092 5.54409 5.81732 5.90572 6.15259 6.28852 6.46301 6.90066 7.05729 7.30342 7.56051 9.06306 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.013057 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.220156 B = 2143.980418 C = 3351.859498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.107 3.893 3 N -0.579 5.579 4 C 0.256 3.744 5 C -0.487 4.487 6 H 0.032 0.968 7 C 0.035 3.965 8 N -0.917 5.917 9 Si 0.937 3.063 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.570 3.430 14 O -0.570 6.570 15 C 0.241 3.759 16 N -0.439 5.439 17 C 0.110 3.890 18 C -0.180 4.180 19 C 0.122 3.878 20 N -0.505 5.505 21 H 0.093 0.907 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.014 0.986 28 H 0.262 0.738 29 H 0.175 0.825 30 H 0.198 0.802 31 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.480 4.961 -5.512 7.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.309 5.309 4 C 0.136 3.864 5 C -0.527 4.527 6 H 0.050 0.950 7 C -0.164 4.164 8 N -0.558 5.558 9 Si 0.764 3.236 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.355 3.645 14 O -0.450 6.450 15 C -0.028 4.028 16 N -0.155 5.155 17 C -0.055 4.055 18 C -0.202 4.202 19 C -0.044 4.044 20 N -0.221 5.221 21 H 0.112 0.888 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.192 0.808 30 H 0.215 0.785 31 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.108 3.809 -5.851 6.983 hybrid contribution 1.397 0.739 0.629 1.701 sum 1.289 4.548 -5.222 7.044 Atomic orbital electron populations 1.22015 0.94358 1.03365 1.01283 1.21575 0.95585 0.81504 1.02851 1.48278 1.61025 1.14420 1.07138 1.19490 0.95771 0.92976 0.78144 1.21154 0.94892 1.31307 1.05302 0.94965 1.25224 0.99763 0.95121 0.96335 1.70003 1.35418 1.35844 1.14507 0.85905 0.82225 0.78185 0.77300 1.19991 1.20895 1.20819 1.17689 0.78763 0.84159 0.83903 1.90633 1.55415 1.66875 1.32069 1.22670 0.98126 0.96333 0.85655 1.69517 1.07040 1.12133 1.26779 1.23892 0.91703 0.89479 1.00431 1.23592 0.99424 1.03844 0.93326 1.24021 0.90445 0.89093 1.00872 1.68148 1.14251 1.10328 1.29389 0.88808 0.92788 0.93917 0.91020 0.89586 0.92996 0.96840 0.92887 0.80754 0.78503 0.76970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 10.24 71.98 0.74 -4.14 16 2 C 0.11 4.08 6.09 86.38 0.53 4.61 16 3 N -0.58 -26.53 2.47 -828.79 -2.05 -28.58 16 4 C 0.26 12.78 4.75 85.63 0.41 13.19 16 5 C -0.49 -25.67 7.41 25.60 0.19 -25.48 16 6 H 0.03 1.79 7.81 -2.91 -0.02 1.77 16 7 C 0.03 1.80 5.46 84.65 0.46 2.26 16 8 N -0.92 -49.39 13.29 21.45 0.28 -49.10 16 9 Si 0.94 41.75 29.54 68.60 2.03 43.77 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.57 27.34 7.65 86.99 0.67 28.01 16 14 O -0.57 -28.81 16.47 -3.60 -0.06 -28.87 16 15 C 0.24 10.74 7.42 137.69 1.02 11.76 16 16 N -0.44 -19.10 4.78 -189.09 -0.90 -20.00 16 17 C 0.11 3.72 11.30 84.79 0.96 4.68 16 18 C -0.18 -4.30 10.18 22.54 0.23 -4.07 16 19 C 0.12 3.26 11.30 84.79 0.96 4.22 16 20 N -0.51 -19.71 10.14 -189.09 -1.92 -21.62 16 21 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 22 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 2.73 7.44 -2.39 -0.02 2.71 16 25 H 0.09 3.14 8.09 -2.38 -0.02 3.12 16 26 H 0.05 2.75 5.73 -2.39 -0.01 2.74 16 27 H 0.01 0.71 8.03 -2.39 -0.02 0.69 16 28 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 29 H 0.18 5.43 8.06 -2.91 -0.02 5.41 16 30 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.21 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -68.37 273.83 4.67 -63.70 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.13 Total: 5.68 kcal Atomic # 6 Polarization: 28.87 SS G_CDS: 6.15 Total: 35.02 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -4.58 Total: -119.31 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.06 Total: -28.87 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -68.37 4.67 -63.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748860814.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.915 kcal (2) G-P(sol) polarization free energy of solvation -68.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds