Wall clock time and date at job start Sun Mar 29 2020 21:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33011 * 119.99848 * 2 1 4 4 C 1.50701 * 119.99799 * 0.02562 * 3 2 1 5 5 C 1.47075 * 120.00280 * 180.02562 * 3 2 1 6 6 O 1.21643 * 119.99667 * 0.02562 * 5 3 2 7 7 N 1.34772 * 120.00303 * 179.97438 * 5 3 2 8 8 C 1.40514 * 120.00186 * 179.97438 * 7 5 3 9 9 C 1.40669 * 126.08604 * 359.97438 * 8 7 5 10 10 N 1.30902 * 108.38542 * 179.77447 * 9 8 7 11 11 N 1.40066 * 108.41578 * 0.38048 * 10 9 8 12 12 C 1.37315 * 126.06841 * 179.87879 * 11 10 9 13 13 H 1.08002 * 119.99767 * 179.68479 * 12 11 10 14 14 C 1.38990 * 119.99986 * 359.96623 * 12 11 10 15 15 N 1.31294 * 119.99879 * 359.72326 * 14 12 11 16 16 Si 1.86792 * 119.99885 * 179.72365 * 14 12 11 17 17 H 1.48494 * 109.47387 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.46983 * 120.00140 * 16 14 12 19 19 H 1.48501 * 109.47108 * 239.99282 * 16 14 12 20 20 C 1.35702 * 126.08262 * 179.97438 * 8 7 5 21 21 H 1.09000 * 109.47350 * 299.99751 * 1 2 3 22 22 H 1.08995 * 109.47479 * 59.99795 * 1 2 3 23 23 H 1.09007 * 109.46572 * 179.97438 * 1 2 3 24 24 H 1.07996 * 120.00619 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.47635 * 269.99952 * 4 3 2 26 26 H 1.09002 * 109.47306 * 30.00719 * 4 3 2 27 27 H 1.09005 * 109.46800 * 149.99823 * 4 3 2 28 28 H 0.97010 * 119.99703 * 0.02562 * 7 5 3 29 29 H 1.08004 * 125.80412 * 0.02562 * 9 8 7 30 30 H 0.97000 * 120.00417 * 180.02562 * 15 14 12 31 31 H 1.07999 * 126.25233 * 0.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1519 0.0000 4 6 1.4184 2.4570 0.0006 5 6 3.6427 1.1520 -0.0006 6 8 4.2510 0.0986 -0.0015 7 7 4.3166 2.3192 -0.0011 8 6 5.7217 2.3193 -0.0011 9 6 6.5503 1.1825 -0.0001 10 7 7.7973 1.5806 -0.0053 11 7 7.8148 2.9812 -0.0011 12 6 8.9347 3.7757 -0.0021 13 1 8.8338 4.8510 -0.0036 14 6 10.1980 3.1962 -0.0070 15 7 10.3205 1.8889 -0.0053 16 14 11.7214 4.2771 -0.0162 17 1 11.3150 5.7053 -0.0174 18 1 12.5359 3.9947 1.1930 19 1 12.5245 3.9903 -1.2319 20 6 6.5209 3.4160 -0.0021 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 -0.0005 24 1 2.0471 -0.9352 -0.0004 25 1 1.2363 2.7719 -1.0268 26 1 0.4662 2.3265 0.5149 27 1 2.0077 3.2165 0.5144 28 1 3.8315 3.1593 -0.0007 29 1 6.2147 0.1560 0.0005 30 1 11.2021 1.4844 -0.0084 31 1 6.1931 4.4451 -0.0026 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751365160.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:02 Heat of formation + Delta-G solvation = 57.103688 kcal Electronic energy + Delta-G solvation = -15800.589804 eV Core-core repulsion = 13084.353272 eV Total energy + Delta-G solvation = -2716.236532 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.91283 -38.69064 -35.38852 -34.19696 -33.11811 -30.26848 -29.48856 -27.53842 -26.12125 -24.78876 -21.88070 -20.75208 -19.38117 -18.21689 -17.29781 -16.73169 -15.43503 -15.22523 -14.72273 -14.48590 -13.73357 -13.64903 -13.36305 -13.02857 -12.91198 -12.64306 -12.27541 -12.06584 -11.64718 -11.39536 -11.26059 -11.22404 -10.89867 -10.49189 -10.12523 -9.13714 -9.13092 -8.95471 -8.77028 -8.01980 -6.64182 -6.53129 -4.19493 1.56104 2.96166 3.06690 3.12724 3.41447 3.69330 3.85117 3.93176 4.51601 4.75294 4.93602 5.04897 5.07787 5.18794 5.23718 5.41076 5.59341 5.68080 5.76755 5.93645 6.27463 6.44275 6.53579 6.63669 6.96059 7.02712 7.19092 7.29078 7.89495 8.25110 8.34180 8.67898 8.94337 9.41431 9.70795 10.43038 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.079407 B = 0.004834 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.530266 B = 5790.793664 C = 6122.870680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.178 4.178 4 C -0.119 4.119 5 C 0.534 3.466 6 O -0.542 6.542 7 N -0.619 5.619 8 C -0.060 4.060 9 C -0.033 4.033 10 N -0.261 5.261 11 N -0.143 5.143 12 C -0.323 4.323 13 H 0.117 0.883 14 C 0.046 3.954 15 N -0.770 5.770 16 Si 0.935 3.065 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.085 4.085 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.126 0.874 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.396 0.604 29 H 0.176 0.824 30 H 0.274 0.726 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.368 2.875 -0.014 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.111 4.111 3 C -0.181 4.181 4 C -0.176 4.176 5 C 0.323 3.677 6 O -0.421 6.421 7 N -0.261 5.261 8 C -0.166 4.166 9 C -0.208 4.208 10 N -0.092 5.092 11 N 0.089 4.911 12 C -0.456 4.456 13 H 0.134 0.866 14 C -0.171 4.171 15 N -0.397 5.397 16 Si 0.759 3.241 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.236 4.236 21 H 0.090 0.910 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.144 0.856 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.231 0.769 29 H 0.193 0.807 30 H 0.085 0.915 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.518 1.602 -0.018 12.620 hybrid contribution -0.434 1.261 -0.005 1.333 sum -12.953 2.862 -0.024 13.265 Atomic orbital electron populations 1.20939 0.92499 1.02672 1.02226 1.23471 0.95838 0.98116 0.93627 1.21470 0.93022 0.96505 1.07104 1.20841 0.99934 0.94411 1.02364 1.18197 0.87189 0.83768 0.78594 1.90668 1.69296 1.31297 1.50860 1.42477 1.04801 1.08000 1.70837 1.17310 0.81521 0.94250 1.23474 1.24129 0.89933 0.98863 1.07892 1.78242 1.17103 0.88127 1.25704 1.44554 1.02952 1.04382 1.39220 1.19918 0.82055 0.90185 1.53395 0.86592 1.25644 0.99751 0.96209 0.95520 1.70230 1.24670 1.09297 1.35481 0.85762 0.80164 0.79733 0.78456 1.18708 1.19922 1.19933 1.21262 0.85268 0.96933 1.20094 0.90985 0.91094 0.91684 0.85621 0.91003 0.91133 0.91713 0.76942 0.80704 0.91538 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 8.91 36.00 0.32 -0.72 16 2 C -0.09 -1.11 9.84 -36.12 -0.36 -1.47 16 3 C -0.18 -2.44 6.00 -102.85 -0.62 -3.06 16 4 C -0.12 -1.15 9.14 36.01 0.33 -0.83 16 5 C 0.53 10.13 7.72 -12.68 -0.10 10.03 16 6 O -0.54 -12.40 13.36 5.24 0.07 -12.33 16 7 N -0.62 -11.74 5.41 -11.07 -0.06 -11.80 16 8 C -0.06 -1.44 6.90 -83.86 -0.58 -2.02 16 9 C -0.03 -0.89 10.85 -17.03 -0.18 -1.08 16 10 N -0.26 -7.80 10.39 30.80 0.32 -7.48 16 11 N -0.14 -4.03 3.74 -11.40 -0.04 -4.07 16 12 C -0.32 -8.71 10.25 -14.82 -0.15 -8.86 16 13 H 0.12 2.79 7.83 -52.49 -0.41 2.38 16 14 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 15 N -0.77 -21.88 11.81 55.50 0.66 -21.23 16 16 Si 0.93 19.16 29.55 -169.99 -5.02 14.14 16 17 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 C -0.08 -2.05 11.50 -16.38 -0.19 -2.24 16 21 H 0.07 0.52 7.40 -51.93 -0.38 0.14 16 22 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.13 1.73 7.49 -52.49 -0.39 1.34 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.55 6.49 -51.93 -0.34 0.21 16 27 H 0.06 0.60 6.70 -51.93 -0.35 0.25 16 28 H 0.40 5.89 6.93 -40.82 -0.28 5.60 16 29 H 0.18 4.77 5.91 -52.48 -0.31 4.46 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.15 2.92 8.06 -52.49 -0.42 2.49 16 LS Contribution 271.69 15.07 4.09 4.09 Total: -1.00 -34.01 271.69 -4.90 -38.90 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -3.29 Total: 8.93 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.62 Total: -9.15 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.87 Total: -44.58 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.07 Total: -12.33 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -34.01 -4.90 -38.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751365160.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.007 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds