Wall clock time and date at job start Sun Mar 29 2020 21:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33011 * 119.99848 * 2 1 4 4 C 1.50701 * 119.99799 * 0.02562 * 3 2 1 5 5 C 1.47075 * 120.00280 * 180.02562 * 3 2 1 6 6 O 1.21643 * 119.99667 * 0.02562 * 5 3 2 7 7 N 1.34772 * 120.00303 * 179.97438 * 5 3 2 8 8 C 1.40514 * 120.00186 * 179.97438 * 7 5 3 9 9 C 1.40669 * 126.08604 * 359.97438 * 8 7 5 10 10 N 1.30902 * 108.38542 * 179.77447 * 9 8 7 11 11 N 1.40066 * 108.41578 * 0.38048 * 10 9 8 12 12 C 1.37315 * 126.06841 * 179.87879 * 11 10 9 13 13 H 1.08002 * 119.99767 * 179.68479 * 12 11 10 14 14 C 1.38990 * 119.99986 * 359.96623 * 12 11 10 15 15 N 1.31294 * 119.99879 * 359.72326 * 14 12 11 16 16 Si 1.86792 * 119.99885 * 179.72365 * 14 12 11 17 17 H 1.48494 * 109.47387 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.46983 * 120.00140 * 16 14 12 19 19 H 1.48501 * 109.47108 * 239.99282 * 16 14 12 20 20 C 1.35702 * 126.08262 * 179.97438 * 8 7 5 21 21 H 1.09000 * 109.47350 * 299.99751 * 1 2 3 22 22 H 1.08995 * 109.47479 * 59.99795 * 1 2 3 23 23 H 1.09007 * 109.46572 * 179.97438 * 1 2 3 24 24 H 1.07996 * 120.00619 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.47635 * 269.99952 * 4 3 2 26 26 H 1.09002 * 109.47306 * 30.00719 * 4 3 2 27 27 H 1.09005 * 109.46800 * 149.99823 * 4 3 2 28 28 H 0.97010 * 119.99703 * 0.02562 * 7 5 3 29 29 H 1.08004 * 125.80412 * 0.02562 * 9 8 7 30 30 H 0.97000 * 120.00417 * 180.02562 * 15 14 12 31 31 H 1.07999 * 126.25233 * 0.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1519 0.0000 4 6 1.4184 2.4570 0.0006 5 6 3.6427 1.1520 -0.0006 6 8 4.2510 0.0986 -0.0015 7 7 4.3166 2.3192 -0.0011 8 6 5.7217 2.3193 -0.0011 9 6 6.5503 1.1825 -0.0001 10 7 7.7973 1.5806 -0.0053 11 7 7.8148 2.9812 -0.0011 12 6 8.9347 3.7757 -0.0021 13 1 8.8338 4.8510 -0.0036 14 6 10.1980 3.1962 -0.0070 15 7 10.3205 1.8889 -0.0053 16 14 11.7214 4.2771 -0.0162 17 1 11.3150 5.7053 -0.0174 18 1 12.5359 3.9947 1.1930 19 1 12.5245 3.9903 -1.2319 20 6 6.5209 3.4160 -0.0021 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 -0.0005 24 1 2.0471 -0.9352 -0.0004 25 1 1.2363 2.7719 -1.0268 26 1 0.4662 2.3265 0.5149 27 1 2.0077 3.2165 0.5144 28 1 3.8315 3.1593 -0.0007 29 1 6.2147 0.1560 0.0005 30 1 11.2021 1.4844 -0.0084 31 1 6.1931 4.4451 -0.0026 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751365160.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:01 Heat of formation + Delta-G solvation = 33.173617 kcal Electronic energy + Delta-G solvation = -15801.627489 eV Core-core repulsion = 13084.353272 eV Total energy + Delta-G solvation = -2717.274218 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.74579 -40.36608 -36.46945 -35.95982 -34.97822 -32.27844 -30.59904 -29.20820 -27.19018 -26.58860 -23.39189 -22.68047 -21.26415 -19.69209 -19.02279 -17.95718 -17.41262 -16.89781 -16.18395 -15.99954 -15.33712 -15.17206 -14.85940 -14.39687 -14.25995 -13.53924 -13.34317 -13.29669 -13.20598 -12.93717 -12.88832 -12.74317 -12.10984 -12.02332 -11.88782 -11.03894 -10.85768 -10.69308 -10.12893 -9.93919 -8.53230 -8.48014 -6.25521 0.41274 1.28303 1.40001 1.59646 1.72670 2.06124 2.09542 2.34834 2.66658 2.92220 3.08390 3.87105 4.05496 4.34637 4.41713 4.51131 4.56921 4.80512 4.87745 4.95532 4.99561 5.06514 5.14138 5.20036 5.27832 5.46395 5.53576 5.74926 5.95174 6.30191 6.71910 6.76925 7.39037 7.45797 7.66028 8.51846 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.079407 B = 0.004834 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.530266 B = 5790.793664 C = 6122.870680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 C -0.196 4.196 4 C -0.113 4.113 5 C 0.526 3.474 6 O -0.591 6.591 7 N -0.611 5.611 8 C -0.049 4.049 9 C -0.062 4.062 10 N -0.310 5.310 11 N -0.167 5.167 12 C -0.354 4.354 13 H 0.143 0.857 14 C -0.008 4.008 15 N -0.826 5.826 16 Si 1.022 2.978 17 H -0.239 1.239 18 H -0.272 1.272 19 H -0.273 1.273 20 C -0.081 4.081 21 H 0.092 0.908 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.419 0.581 29 H 0.164 0.836 30 H 0.277 0.723 31 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 5.421 -0.008 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.096 4.096 3 C -0.199 4.199 4 C -0.169 4.169 5 C 0.318 3.682 6 O -0.474 6.474 7 N -0.256 5.256 8 C -0.155 4.155 9 C -0.237 4.237 10 N -0.142 5.142 11 N 0.064 4.936 12 C -0.485 4.485 13 H 0.160 0.840 14 C -0.219 4.219 15 N -0.454 5.454 16 Si 0.841 3.159 17 H -0.162 1.162 18 H -0.197 1.197 19 H -0.198 1.198 20 C -0.231 4.231 21 H 0.110 0.890 22 H 0.108 0.892 23 H 0.094 0.906 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.087 0.913 28 H 0.257 0.743 29 H 0.181 0.819 30 H 0.086 0.914 31 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.660 4.183 -0.013 15.245 hybrid contribution 0.035 0.357 -0.005 0.359 sum -14.624 4.540 -0.018 15.313 Atomic orbital electron populations 1.21024 0.88701 1.04143 1.03911 1.23786 0.98422 0.96656 0.90712 1.21437 0.89617 0.99228 1.09633 1.20897 1.00449 0.91837 1.03731 1.19244 0.89559 0.82778 0.76666 1.90646 1.70908 1.33027 1.52770 1.42424 1.02706 1.09501 1.70936 1.17425 0.83893 0.92969 1.21215 1.24140 0.90495 0.99522 1.09548 1.78136 1.18505 0.90040 1.27568 1.44870 1.04580 1.03864 1.40264 1.20714 0.82440 0.91441 1.53929 0.83957 1.26933 1.03367 0.97570 0.94054 1.70414 1.25705 1.11941 1.37318 0.84496 0.74751 0.78480 0.78195 1.16183 1.19748 1.19778 1.22004 0.84034 0.98888 1.18173 0.88962 0.89169 0.90569 0.88159 0.89601 0.88499 0.91345 0.74283 0.81865 0.91376 0.79277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 8.91 71.24 0.63 -0.90 16 2 C -0.08 -1.74 9.84 24.52 0.24 -1.49 16 3 C -0.20 -5.04 6.00 -18.71 -0.11 -5.15 16 4 C -0.11 -1.77 9.14 71.24 0.65 -1.11 16 5 C 0.53 20.02 7.72 86.56 0.67 20.69 16 6 O -0.59 -28.29 13.36 -4.17 -0.06 -28.34 16 7 N -0.61 -22.73 5.41 -307.19 -1.66 -24.39 16 8 C -0.05 -2.37 6.90 37.75 0.26 -2.11 16 9 C -0.06 -3.57 10.85 85.43 0.93 -2.65 16 10 N -0.31 -19.44 10.39 -56.45 -0.59 -20.02 16 11 N -0.17 -9.53 3.74 -189.99 -0.71 -10.24 16 12 C -0.35 -19.09 10.25 84.01 0.86 -18.23 16 13 H 0.14 6.61 7.83 -2.91 -0.02 6.58 16 14 C -0.01 -0.41 5.50 84.95 0.47 0.05 16 15 N -0.83 -48.68 11.81 21.66 0.26 -48.42 16 16 Si 1.02 39.03 29.55 68.60 2.03 41.06 16 17 H -0.24 -8.11 7.11 99.48 0.71 -7.41 16 18 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 19 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 20 C -0.08 -3.86 11.50 83.38 0.96 -2.90 16 21 H 0.09 0.89 7.40 -2.39 -0.02 0.87 16 22 H 0.09 0.89 8.10 -2.39 -0.02 0.87 16 23 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 24 H 0.10 2.80 7.49 -2.91 -0.02 2.78 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 1.03 6.49 -2.39 -0.02 1.01 16 27 H 0.07 1.02 6.70 -2.38 -0.02 1.00 16 28 H 0.42 11.49 6.93 -92.70 -0.64 10.85 16 29 H 0.16 9.60 5.91 -2.91 -0.02 9.58 16 30 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 31 H 0.19 7.06 8.06 -2.91 -0.02 7.04 16 Total: -1.00 -79.31 271.69 5.34 -73.97 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.52 Total: 30.20 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 5.56 Total: -13.81 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -2.70 Total: -103.08 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.06 Total: -28.34 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -79.31 5.34 -73.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751365160.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.140 kcal (2) G-P(sol) polarization free energy of solvation -79.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds