Wall clock time and date at job start Sun Mar 29 2020 21:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21479 * 119.99467 * 0.02562 * 14 13 3 16 16 C 1.48533 * 120.00300 * 180.02562 * 14 13 3 17 17 N 1.32460 * 119.19092 * 359.73235 * 16 14 13 18 18 C 1.32107 * 120.77199 * 179.72293 * 17 16 14 19 19 C 1.38803 * 119.16276 * 0.53363 * 18 17 16 20 20 C 1.38801 * 118.50735 * 359.74199 * 19 18 17 21 21 N 1.32115 * 119.16392 * 359.97438 * 20 19 18 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 28 28 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 29 29 H 1.07993 * 120.42076 * 180.27688 * 18 17 16 30 30 H 1.08003 * 120.74891 * 179.75484 * 19 18 17 31 31 H 1.07999 * 120.41774 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3408 2.6319 0.4328 16 6 0.0424 3.3290 2.6359 17 7 0.8990 3.3505 3.6459 18 6 0.5843 3.9376 4.7867 19 6 -0.6654 4.5264 4.9222 20 6 -1.5397 4.4801 3.8452 21 7 -1.1579 3.8813 2.7312 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0604 -2.9502 28 1 2.2719 2.1232 1.9977 29 1 1.2887 3.9556 5.6050 30 1 -0.9509 5.0100 5.8448 31 1 -2.5195 4.9287 3.9167 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762719010.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:29 Heat of formation + Delta-G solvation = 12.963829 kcal Electronic energy + Delta-G solvation = -16251.038289 eV Core-core repulsion = 13532.887709 eV Total energy + Delta-G solvation = -2718.150580 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.07756 -38.64967 -35.10441 -33.84972 -32.52448 -32.02126 -30.71837 -27.16310 -25.12121 -24.51020 -22.94323 -20.93202 -19.39861 -18.25557 -17.49548 -16.41199 -15.68304 -15.37249 -15.14770 -14.84128 -14.20423 -13.95596 -13.64018 -13.11212 -12.66755 -12.00447 -11.50222 -11.26180 -11.17424 -10.95022 -10.94590 -10.82586 -10.29310 -10.17730 -9.74866 -9.59818 -9.30875 -9.23018 -9.02183 -8.48778 -7.83416 -6.10606 -4.19547 0.53466 1.02944 3.13511 3.26095 3.33155 3.35974 3.44881 4.03993 4.12520 4.34975 4.44027 4.72885 4.87053 4.94820 5.21086 5.45224 5.62952 6.20257 6.41628 6.48337 6.67369 6.88607 7.06656 7.19978 7.35238 7.41413 7.62072 7.71988 7.87821 8.00174 8.18081 8.65808 8.77687 9.06962 9.47138 10.95015 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035997 B = 0.006529 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.653549 B = 4287.646858 C = 4810.978513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.053 0.947 5 C -0.532 4.532 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.680 5.680 14 C 0.564 3.436 15 O -0.514 6.514 16 C 0.296 3.704 17 N -0.494 5.494 18 C 0.143 3.857 19 C -0.223 4.223 20 C 0.142 3.858 21 N -0.472 5.472 22 H 0.024 0.976 23 H 0.051 0.949 24 H 0.036 0.964 25 H 0.033 0.967 26 H 0.102 0.898 27 H 0.264 0.736 28 H 0.400 0.600 29 H 0.172 0.828 30 H 0.150 0.850 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 6.001 13.906 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.329 5.329 14 C 0.343 3.657 15 O -0.388 6.388 16 C 0.025 3.975 17 N -0.210 5.210 18 C -0.023 4.023 19 C -0.245 4.245 20 C -0.025 4.025 21 N -0.187 5.187 22 H 0.044 0.956 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.120 0.880 27 H 0.074 0.926 28 H 0.234 0.766 29 H 0.190 0.810 30 H 0.167 0.833 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.557 5.389 12.111 14.373 hybrid contribution 0.952 0.499 1.286 1.676 sum -4.606 5.888 13.397 15.342 Atomic orbital electron populations 1.21857 0.98321 0.98228 1.01225 1.21952 0.92617 0.99564 1.02524 1.18937 0.94566 0.89306 0.80467 0.92970 1.21256 0.90456 1.38973 1.06384 0.91812 1.24882 0.98683 0.94771 0.95329 1.69906 1.35059 1.37688 1.09328 0.86376 0.84768 0.77757 0.78113 1.19698 1.20872 1.20898 1.46406 1.13614 1.53839 1.19025 1.17292 0.83812 0.80215 0.84370 1.90781 1.51407 1.58740 1.37843 1.23625 0.86323 0.93193 0.94311 1.68418 1.35203 1.16615 1.00796 1.23306 0.94667 0.89668 0.94708 1.23108 0.96760 1.02821 1.01819 1.23378 0.99682 0.91930 0.87544 1.68344 1.16790 1.07660 1.25896 0.95645 0.92956 0.94520 0.94818 0.88015 0.92590 0.76597 0.81046 0.83264 0.81094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.51 37.16 0.32 -2.88 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.90 2.24 -69.08 -0.15 6.75 16 4 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 5 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -15.14 5.01 -55.66 -0.28 -15.42 16 14 C 0.56 12.44 6.42 -12.01 -0.08 12.36 16 15 O -0.51 -12.85 14.00 5.38 0.08 -12.77 16 16 C 0.30 5.44 7.60 -157.07 -1.19 4.25 16 17 N -0.49 -7.67 9.58 -11.12 -0.11 -7.78 16 18 C 0.14 1.54 11.30 -17.22 -0.19 1.35 16 19 C -0.22 -1.99 10.18 -39.16 -0.40 -2.38 16 20 C 0.14 1.61 11.30 -17.22 -0.19 1.42 16 21 N -0.47 -8.01 10.13 -11.12 -0.11 -8.13 16 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 1.27 7.84 -51.93 -0.41 0.86 16 24 H 0.04 0.84 5.64 -51.93 -0.29 0.54 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.10 2.75 5.95 -51.93 -0.31 2.44 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.40 8.16 7.84 -40.82 -0.32 7.84 16 29 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 31 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 269.26 15.07 4.06 4.06 Total: -1.00 -31.98 269.26 -6.58 -38.55 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.38 Total: 5.19 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -2.44 Total: 4.73 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.13 Total: -55.44 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.98 -6.58 -38.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762719010.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.515 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds