Wall clock time and date at job start Sun Mar 29 2020 21:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21479 * 119.99467 * 0.02562 * 14 13 3 16 16 C 1.48533 * 120.00300 * 180.02562 * 14 13 3 17 17 N 1.32460 * 119.19092 * 359.73235 * 16 14 13 18 18 C 1.32107 * 120.77199 * 179.72293 * 17 16 14 19 19 C 1.38803 * 119.16276 * 0.53363 * 18 17 16 20 20 C 1.38801 * 118.50735 * 359.74199 * 19 18 17 21 21 N 1.32115 * 119.16392 * 359.97438 * 20 19 18 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 28 28 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 29 29 H 1.07993 * 120.42076 * 180.27688 * 18 17 16 30 30 H 1.08003 * 120.74891 * 179.75484 * 19 18 17 31 31 H 1.07999 * 120.41774 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3408 2.6319 0.4328 16 6 0.0424 3.3290 2.6359 17 7 0.8990 3.3505 3.6459 18 6 0.5843 3.9376 4.7867 19 6 -0.6654 4.5264 4.9222 20 6 -1.5397 4.4801 3.8452 21 7 -1.1579 3.8813 2.7312 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0604 -2.9502 28 1 2.2719 2.1232 1.9977 29 1 1.2887 3.9556 5.6050 30 1 -0.9509 5.0100 5.8448 31 1 -2.5195 4.9287 3.9167 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762719010.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:29 Heat of formation + Delta-G solvation = -10.711779 kcal Electronic energy + Delta-G solvation = -16252.064940 eV Core-core repulsion = 13532.887709 eV Total energy + Delta-G solvation = -2719.177231 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.17986 -40.33462 -37.01323 -34.99824 -34.23669 -33.42159 -32.43483 -29.10795 -26.49345 -25.47343 -24.82696 -22.53987 -21.29822 -19.81464 -18.62028 -18.03579 -17.14780 -16.82702 -16.68170 -16.24518 -15.76079 -15.43498 -14.80949 -14.61578 -14.44762 -13.85417 -13.50409 -13.19949 -12.89545 -12.70388 -12.26381 -12.11830 -12.08298 -12.02911 -11.62358 -11.07517 -10.94605 -10.67217 -10.54993 -10.33194 -9.71921 -8.16455 -6.33870 -0.53261 0.14561 1.45558 1.46190 1.58730 1.74887 2.00123 2.43953 2.87928 3.03414 3.13055 3.46144 3.70710 3.99211 4.15235 4.43057 4.46331 4.52969 4.71570 4.79996 5.02505 5.21400 5.33681 5.39691 5.47967 5.58622 5.75156 5.86442 5.97074 6.12853 6.69766 6.72372 7.04266 7.27714 7.43334 8.89652 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035997 B = 0.006529 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.653549 B = 4287.646858 C = 4810.978513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.276 3.724 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.974 3.026 10 H -0.262 1.262 11 H -0.276 1.276 12 H -0.283 1.283 13 N -0.678 5.678 14 C 0.560 3.440 15 O -0.557 6.557 16 C 0.262 3.738 17 N -0.510 5.510 18 C 0.132 3.868 19 C -0.179 4.179 20 C 0.127 3.873 21 N -0.510 5.510 22 H 0.050 0.950 23 H 0.029 0.971 24 H 0.034 0.966 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.266 0.734 28 H 0.409 0.591 29 H 0.217 0.783 30 H 0.207 0.793 31 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.895 7.021 17.196 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.021 0.979 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.798 3.202 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.209 1.209 13 N -0.328 5.328 14 C 0.343 3.657 15 O -0.434 6.434 16 C -0.007 4.007 17 N -0.228 5.228 18 C -0.033 4.033 19 C -0.201 4.201 20 C -0.038 4.038 21 N -0.227 5.227 22 H 0.069 0.931 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.245 0.755 29 H 0.233 0.767 30 H 0.224 0.776 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.156 6.427 15.455 17.514 hybrid contribution 0.722 0.300 0.430 0.892 sum -4.434 6.727 15.884 17.811 Atomic orbital electron populations 1.21687 0.97104 0.99380 1.00017 1.21795 0.93611 0.98826 1.01651 1.18561 0.94196 0.89376 0.80582 0.97863 1.21546 0.90968 1.39231 1.06906 0.91151 1.25772 1.03526 0.94183 0.94822 1.70049 1.37090 1.38234 1.09837 0.85273 0.78795 0.77940 0.78182 1.18588 1.20196 1.20874 1.46139 1.14385 1.54154 1.18096 1.17855 0.82850 0.79338 0.85694 1.90731 1.52408 1.60255 1.40038 1.22521 0.88086 0.96416 0.93720 1.68311 1.35042 1.17683 1.01765 1.24182 0.96569 0.88632 0.93935 1.23709 0.94653 0.99167 1.02540 1.24157 1.01747 0.91223 0.86710 1.68196 1.16516 1.08877 1.29064 0.93095 0.95169 0.94711 0.93947 0.90310 0.92438 0.75533 0.76690 0.77596 0.77339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.51 71.98 0.61 -5.33 16 2 C -0.12 -6.16 5.45 30.60 0.17 -6.00 16 3 C 0.28 14.88 2.24 44.25 0.10 14.98 16 4 H 0.00 0.22 7.58 -2.39 -0.02 0.20 16 5 C -0.55 -29.99 8.73 25.60 0.22 -29.77 16 6 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 7 C 0.02 0.94 5.29 84.66 0.45 1.39 16 8 N -0.91 -52.81 11.29 21.45 0.24 -52.57 16 9 Si 0.97 42.67 29.54 68.60 2.03 44.69 16 10 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.68 -31.47 5.01 -448.32 -2.25 -33.72 16 14 C 0.56 25.92 6.42 86.99 0.56 26.48 16 15 O -0.56 -29.68 14.00 -3.65 -0.05 -29.73 16 16 C 0.26 9.73 7.60 137.68 1.05 10.78 16 17 N -0.51 -15.17 9.58 -189.10 -1.81 -16.98 16 18 C 0.13 2.31 11.30 84.79 0.96 3.27 16 19 C -0.18 -2.25 10.18 22.54 0.23 -2.02 16 20 C 0.13 2.47 11.30 84.79 0.96 3.43 16 21 N -0.51 -17.08 10.13 -189.09 -1.92 -19.00 16 22 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.03 1.53 7.84 -2.39 -0.02 1.51 16 24 H 0.03 1.64 5.64 -2.38 -0.01 1.63 16 25 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.08 4.43 5.95 -2.39 -0.01 4.42 16 27 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.41 17.12 7.84 -92.71 -0.73 16.39 16 29 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.21 0.29 8.06 -2.91 -0.02 0.27 16 31 H 0.21 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -75.20 269.26 1.97 -73.22 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.43 Total: 16.88 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 5.30 Total: 17.20 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -5.73 Total: -122.27 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.05 Total: -29.73 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -75.20 1.97 -73.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762719010.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.510 kcal (2) G-P(sol) polarization free energy of solvation -75.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds