Wall clock time and date at job start Sun Mar 29 2020 21:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47112 * 59.99775 * 9 7 5 11 11 H 1.48497 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47038 * 300.00131 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21462 * 119.99963 * 359.97438 * 14 13 3 16 16 C 1.48532 * 119.99651 * 179.97438 * 14 13 3 17 17 N 1.32467 * 119.18970 * 359.72997 * 16 14 13 18 18 C 1.32106 * 120.76762 * 179.71690 * 17 16 14 19 19 C 1.38802 * 119.16639 * 0.54486 * 18 17 16 20 20 C 1.38802 * 118.50525 * 359.72807 * 19 18 17 21 21 N 1.32115 * 119.16362 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 28 28 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 29 29 H 1.07998 * 120.41860 * 180.27184 * 18 17 16 30 30 H 1.08001 * 120.75031 * 179.74944 * 19 18 17 31 31 H 1.08001 * 120.42086 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2179 2.6510 12 1 6.5975 0.1473 0.2350 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3407 2.6319 -0.4331 16 6 0.0424 3.3288 -2.6361 17 7 0.9032 3.3595 -3.6425 18 6 0.5845 3.9372 -4.7870 19 6 -0.6652 4.5259 -4.9226 20 6 -1.5396 4.4798 -3.8456 21 7 -1.1577 3.8811 -2.7315 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0610 2.9499 28 1 2.2720 2.1231 -1.9978 29 1 1.2890 3.9551 -5.6053 30 1 -0.9509 5.0088 -5.8454 31 1 -2.5198 4.9276 -3.9174 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762719012.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:32 Heat of formation + Delta-G solvation = 13.063804 kcal Electronic energy + Delta-G solvation = -16250.772485 eV Core-core repulsion = 13532.626240 eV Total energy + Delta-G solvation = -2718.146244 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.07742 -38.65063 -35.10381 -33.84925 -32.52396 -32.01966 -30.71676 -27.16053 -25.12012 -24.50968 -22.93949 -20.93095 -19.39715 -18.25499 -17.49511 -16.40869 -15.68193 -15.36556 -15.15140 -14.83802 -14.21124 -13.95531 -13.64040 -13.11242 -12.65763 -12.00441 -11.49604 -11.25123 -11.17143 -10.97503 -10.95011 -10.79993 -10.31357 -10.17144 -9.75016 -9.59532 -9.30867 -9.23036 -9.03515 -8.47904 -7.83359 -6.10001 -4.19228 0.53488 1.02959 3.13574 3.28565 3.32978 3.33953 3.44560 4.04003 4.12584 4.35149 4.44027 4.72946 4.87086 4.94830 5.21384 5.45254 5.62963 6.20268 6.41719 6.48496 6.67495 6.88624 7.06757 7.20067 7.35338 7.41486 7.62101 7.71922 7.87994 8.00270 8.18360 8.65888 8.77529 9.06966 9.47326 10.95487 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035994 B = 0.006529 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.726795 B = 4287.311315 C = 4811.171079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.564 3.436 15 O -0.513 6.513 16 C 0.296 3.704 17 N -0.494 5.494 18 C 0.143 3.857 19 C -0.223 4.223 20 C 0.142 3.858 21 N -0.472 5.472 22 H 0.024 0.976 23 H 0.036 0.964 24 H 0.051 0.949 25 H 0.102 0.898 26 H 0.033 0.967 27 H 0.265 0.735 28 H 0.400 0.600 29 H 0.172 0.828 30 H 0.150 0.850 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 5.962 -13.884 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.329 5.329 14 C 0.343 3.657 15 O -0.388 6.388 16 C 0.025 3.975 17 N -0.210 5.210 18 C -0.024 4.024 19 C -0.245 4.245 20 C -0.025 4.025 21 N -0.187 5.187 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.120 0.880 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.234 0.766 29 H 0.190 0.810 30 H 0.167 0.833 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.560 5.358 -12.075 14.333 hybrid contribution 0.960 0.511 -1.309 1.702 sum -4.600 5.869 -13.385 15.322 Atomic orbital electron populations 1.21857 0.98324 0.98229 1.01224 1.21953 0.92610 0.99570 1.02528 1.18927 0.94520 0.89299 0.80455 0.92977 1.21182 0.90458 1.39181 1.06410 0.91920 1.24877 0.98664 0.94747 0.95316 1.69883 1.35245 1.37519 1.09336 0.86489 0.84759 0.78316 0.77419 1.20191 1.21144 1.20124 1.46411 1.13612 1.53846 1.19028 1.17288 0.83810 0.80220 0.84363 1.90776 1.51404 1.58732 1.37844 1.23630 0.86286 0.93182 0.94359 1.68423 1.35198 1.16620 1.00793 1.23307 0.94660 0.89735 0.94649 1.23107 0.96775 1.02771 1.01858 1.23379 0.99655 0.91957 0.87539 1.68343 1.16895 1.07637 1.25818 0.95645 0.94516 0.92962 0.88010 0.94821 0.92474 0.76602 0.81046 0.83266 0.81094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.51 37.16 0.32 -2.88 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.93 2.24 -69.08 -0.15 6.77 16 4 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 5 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 6 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.12 16 9 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.68 -15.15 5.01 -55.66 -0.28 -15.43 16 14 C 0.56 12.45 6.42 -12.01 -0.08 12.37 16 15 O -0.51 -12.85 14.00 5.40 0.08 -12.77 16 16 C 0.30 5.44 7.60 -157.07 -1.19 4.25 16 17 N -0.49 -7.67 9.58 -11.12 -0.11 -7.78 16 18 C 0.14 1.54 11.30 -17.22 -0.19 1.35 16 19 C -0.22 -1.99 10.18 -39.16 -0.40 -2.39 16 20 C 0.14 1.61 11.30 -17.22 -0.19 1.42 16 21 N -0.47 -8.02 10.13 -11.12 -0.11 -8.13 16 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.04 0.84 5.64 -51.93 -0.29 0.54 16 24 H 0.05 1.27 7.85 -51.93 -0.41 0.86 16 25 H 0.10 2.75 5.95 -51.93 -0.31 2.44 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.40 8.15 7.84 -40.82 -0.32 7.83 16 29 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 269.26 15.07 4.06 4.06 Total: -1.00 -31.93 269.26 -6.57 -38.51 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.38 Total: 5.25 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -2.44 Total: 4.73 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.13 Total: -55.46 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.93 -6.57 -38.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762719012.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.572 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds