Wall clock time and date at job start Sun Mar 29 2020 21:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47112 * 59.99775 * 9 7 5 11 11 H 1.48497 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47038 * 300.00131 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21462 * 119.99963 * 359.97438 * 14 13 3 16 16 C 1.48532 * 119.99651 * 179.97438 * 14 13 3 17 17 N 1.32467 * 119.18970 * 359.72997 * 16 14 13 18 18 C 1.32106 * 120.76762 * 179.71690 * 17 16 14 19 19 C 1.38802 * 119.16639 * 0.54486 * 18 17 16 20 20 C 1.38802 * 118.50525 * 359.72807 * 19 18 17 21 21 N 1.32115 * 119.16362 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 28 28 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 29 29 H 1.07998 * 120.41860 * 180.27184 * 18 17 16 30 30 H 1.08001 * 120.75031 * 179.74944 * 19 18 17 31 31 H 1.08001 * 120.42086 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2179 2.6510 12 1 6.5975 0.1473 0.2350 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3407 2.6319 -0.4331 16 6 0.0424 3.3288 -2.6361 17 7 0.9032 3.3595 -3.6425 18 6 0.5845 3.9372 -4.7870 19 6 -0.6652 4.5259 -4.9226 20 6 -1.5396 4.4798 -3.8456 21 7 -1.1577 3.8811 -2.7315 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0610 2.9499 28 1 2.2720 2.1231 -1.9978 29 1 1.2890 3.9551 -5.6053 30 1 -0.9509 5.0088 -5.8454 31 1 -2.5198 4.9276 -3.9174 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762719012.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:32 Heat of formation + Delta-G solvation = -10.577293 kcal Electronic energy + Delta-G solvation = -16251.797640 eV Core-core repulsion = 13532.626240 eV Total energy + Delta-G solvation = -2719.171399 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.18028 -40.33580 -37.01288 -34.99799 -34.23558 -33.42110 -32.43378 -29.10487 -26.49217 -25.47319 -24.82369 -22.53888 -21.29759 -19.81363 -18.62021 -18.02932 -17.14437 -16.82625 -16.68307 -16.24924 -15.76124 -15.43716 -14.80876 -14.60509 -14.44776 -13.85409 -13.49918 -13.18478 -12.92765 -12.65410 -12.27804 -12.12560 -12.09370 -12.02950 -11.61970 -11.09599 -10.94483 -10.67113 -10.53550 -10.33228 -9.71927 -8.15855 -6.33583 -0.53279 0.14543 1.46074 1.48532 1.56300 1.74916 2.00092 2.44262 2.87923 3.03408 3.13362 3.46166 3.70682 3.99194 4.15206 4.43048 4.46390 4.53147 4.71672 4.79960 5.02541 5.21480 5.33654 5.39793 5.48035 5.58317 5.75297 5.86659 5.97056 6.12993 6.69688 6.72219 7.04296 7.27781 7.43472 8.89758 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035994 B = 0.006529 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.726795 B = 4287.311315 C = 4811.171079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.276 3.724 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.973 3.027 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.264 1.264 13 N -0.678 5.678 14 C 0.560 3.440 15 O -0.557 6.557 16 C 0.262 3.738 17 N -0.510 5.510 18 C 0.132 3.868 19 C -0.179 4.179 20 C 0.126 3.874 21 N -0.510 5.510 22 H 0.050 0.950 23 H 0.034 0.966 24 H 0.029 0.971 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.267 0.733 28 H 0.409 0.591 29 H 0.217 0.783 30 H 0.207 0.793 31 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 6.973 -17.183 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.798 3.202 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.188 1.188 13 N -0.328 5.328 14 C 0.343 3.657 15 O -0.434 6.434 16 C -0.007 4.007 17 N -0.228 5.228 18 C -0.033 4.033 19 C -0.201 4.201 20 C -0.038 4.038 21 N -0.227 5.227 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.245 0.755 29 H 0.233 0.767 30 H 0.224 0.776 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.149 6.387 -15.429 17.475 hybrid contribution 0.727 0.317 -0.451 0.913 sum -4.422 6.704 -15.881 17.796 Atomic orbital electron populations 1.21688 0.97105 0.99383 1.00015 1.21796 0.93607 0.98827 1.01651 1.18552 0.94160 0.89369 0.80568 0.97887 1.21491 0.90990 1.39444 1.06972 0.91151 1.25769 1.03523 0.94148 0.94800 1.70033 1.37236 1.38075 1.09809 0.85384 0.78766 0.78440 0.77650 1.19753 1.20931 1.18848 1.46143 1.14382 1.54163 1.18100 1.17853 0.82849 0.79346 0.85688 1.90726 1.52406 1.60246 1.40040 1.22523 0.88041 0.96408 0.93776 1.68315 1.35037 1.17667 1.01785 1.24184 0.96567 0.88705 0.93865 1.23709 0.94662 0.99112 1.02584 1.24158 1.01722 0.91256 0.86702 1.68193 1.16633 1.08847 1.28981 0.93090 0.94706 0.95177 0.90294 0.93964 0.92421 0.75532 0.76686 0.77595 0.77338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.51 71.98 0.61 -5.34 16 2 C -0.12 -6.16 5.45 30.60 0.17 -6.00 16 3 C 0.28 14.92 2.24 44.25 0.10 15.02 16 4 H 0.00 0.20 7.58 -2.39 -0.02 0.19 16 5 C -0.55 -30.14 8.73 25.60 0.22 -29.92 16 6 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -52.80 11.29 21.45 0.24 -52.56 16 9 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 13 N -0.68 -31.49 5.01 -448.31 -2.25 -33.74 16 14 C 0.56 25.93 6.42 86.99 0.56 26.49 16 15 O -0.56 -29.69 14.00 -3.60 -0.05 -29.74 16 16 C 0.26 9.73 7.60 137.68 1.05 10.78 16 17 N -0.51 -15.18 9.58 -189.10 -1.81 -16.99 16 18 C 0.13 2.31 11.30 84.79 0.96 3.27 16 19 C -0.18 -2.25 10.18 22.54 0.23 -2.02 16 20 C 0.13 2.47 11.30 84.79 0.96 3.43 16 21 N -0.51 -17.09 10.13 -189.09 -1.92 -19.01 16 22 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.03 1.65 5.64 -2.39 -0.01 1.63 16 24 H 0.03 1.53 7.85 -2.38 -0.02 1.51 16 25 H 0.08 4.44 5.95 -2.39 -0.01 4.43 16 26 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.41 17.11 7.84 -92.71 -0.73 16.39 16 29 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.21 0.29 8.06 -2.91 -0.02 0.27 16 31 H 0.21 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -75.14 269.26 1.97 -73.17 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.43 Total: 17.06 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 5.30 Total: 17.15 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -5.73 Total: -122.29 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.05 Total: -29.74 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -75.14 1.97 -73.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762719012.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.589 kcal (2) G-P(sol) polarization free energy of solvation -75.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds