Wall clock time and date at job start Sun Mar 29 2020 21:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.38620 * 120.73043 * 2 1 4 4 N 1.32273 * 119.18328 * 179.97438 * 3 2 1 5 5 C 1.32411 * 120.75278 * 359.97438 * 4 3 2 6 6 N 1.38936 * 119.20237 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99753 * 179.72318 * 6 5 4 8 8 O 1.21263 * 120.00209 * 0.28121 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27675 * 7 6 5 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99463 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00445 * 180.02562 * 11 10 9 14 14 N 1.31524 * 120.00004 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00395 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47175 * 89.99791 * 15 13 11 17 17 H 1.48506 * 109.47225 * 210.00239 * 15 13 11 18 18 H 1.48504 * 109.46680 * 329.99683 * 15 13 11 19 19 N 1.32406 * 121.59301 * 0.27530 * 5 4 3 20 20 C 1.32280 * 120.74685 * 359.44548 * 19 5 4 21 21 H 1.09002 * 109.46972 * 90.00247 * 1 2 3 22 22 H 1.09000 * 109.47463 * 209.99868 * 1 2 3 23 23 H 1.09003 * 109.47747 * 330.00124 * 1 2 3 24 24 H 1.07999 * 120.40827 * 359.95466 * 3 2 1 25 25 H 0.97001 * 120.00459 * 0.02562 * 6 5 4 26 26 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 27 27 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 28 28 H 1.08998 * 109.47508 * 300.00200 * 10 9 7 29 29 H 1.09011 * 109.47182 * 60.00188 * 10 9 7 30 30 H 0.96991 * 119.99897 * 179.97438 * 14 13 11 31 31 H 1.08004 * 120.40803 * 180.27638 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2152 1.1916 0.0000 4 7 3.5375 1.1558 0.0005 5 6 4.1836 0.0001 0.0015 6 7 5.5729 0.0001 0.0015 7 6 6.2468 -1.1670 0.0082 8 8 5.6406 -2.2172 0.0091 9 6 7.7539 -1.1671 0.0145 10 6 8.2638 -2.6094 0.0207 11 6 9.7709 -2.6095 0.0276 12 1 10.3108 -1.6741 0.0271 13 6 10.4603 -3.8034 0.0335 14 7 9.8027 -4.9425 0.0336 15 14 12.3282 -3.8034 0.0428 16 1 12.8163 -3.8005 1.4453 17 1 12.8267 -5.0174 -0.6524 18 1 12.8266 -2.5923 -0.6574 19 7 3.5376 -1.1557 -0.0033 20 6 2.2153 -1.1914 0.0016 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3635 0.8900 0.5138 24 1 1.6939 2.1374 -0.0007 25 1 6.0580 0.8402 0.0011 26 1 8.1209 -0.6561 -0.8756 27 1 8.1135 -0.6502 0.9042 28 1 7.8968 -3.1208 0.9106 29 1 7.9042 -3.1259 -0.8694 30 1 10.2877 -5.7824 0.0373 31 1 1.6940 -2.1373 0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813061864.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:30 Heat of formation + Delta-G solvation = 14.896884 kcal Electronic energy + Delta-G solvation = -15530.482582 eV Core-core repulsion = 12812.415826 eV Total energy + Delta-G solvation = -2718.066756 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.22909 -39.09643 -35.12908 -33.72580 -33.45109 -32.72357 -30.95924 -27.37990 -25.63059 -24.81618 -22.99117 -21.53847 -19.93176 -18.33751 -17.50852 -16.55667 -15.67852 -15.45583 -15.13116 -14.53214 -14.45856 -14.32905 -13.52562 -13.36336 -13.32359 -12.62385 -12.35573 -12.20774 -11.28186 -11.06135 -10.94865 -10.84679 -10.61609 -10.53186 -9.99871 -9.71516 -9.41393 -9.12583 -8.80047 -8.45163 -8.33005 -5.97382 -4.02185 0.91605 1.12671 2.78885 3.06827 3.33347 3.39500 3.42104 3.93014 4.14327 4.44995 4.53445 4.64801 4.74325 4.78594 5.34022 5.37711 5.40638 5.46751 5.65328 5.81756 6.10124 6.13933 6.15113 6.58526 6.77336 7.06934 7.31180 7.72049 7.81527 8.03997 8.26578 8.35426 8.61614 9.05680 9.61557 11.13532 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.077111 B = 0.004232 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.026086 B = 6613.948683 C = 6951.209632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.243 4.243 3 C 0.176 3.824 4 N -0.554 5.554 5 C 0.536 3.464 6 N -0.648 5.648 7 C 0.500 3.500 8 O -0.459 6.459 9 C -0.124 4.124 10 C 0.036 3.964 11 C -0.528 4.528 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.889 5.889 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 N -0.498 5.498 20 C 0.178 3.822 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.168 0.832 25 H 0.420 0.580 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.439 12.813 -0.070 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.249 4.249 3 C 0.009 3.991 4 N -0.274 5.274 5 C 0.181 3.819 6 N -0.299 5.299 7 C 0.287 3.713 8 O -0.325 6.325 9 C -0.164 4.164 10 C -0.002 4.002 11 C -0.566 4.566 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.527 5.527 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 N -0.217 5.217 20 C 0.010 3.990 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.185 0.815 25 H 0.258 0.742 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.656 11.746 -0.081 19.573 hybrid contribution 0.314 0.464 0.012 0.561 sum -15.342 12.211 -0.069 19.608 Atomic orbital electron populations 1.20516 0.89370 1.03025 1.02391 1.21509 0.98937 0.95627 1.08857 1.22816 0.88129 0.98158 0.90026 1.67832 1.10752 1.28736 1.20082 1.19741 0.87271 0.84876 0.90008 1.43905 1.01422 1.12229 1.72340 1.22056 0.91746 0.82129 0.75332 1.90787 1.69655 1.30092 1.41946 1.21935 0.86211 1.05200 1.03083 1.18943 0.95124 0.87235 0.98865 1.21185 0.91359 0.92469 1.51632 0.92480 1.25025 0.98484 0.95628 0.95236 1.69999 1.35420 0.97297 1.50012 0.86570 0.85650 0.77521 0.78080 1.20656 1.21219 1.19855 1.68599 1.09508 1.27426 1.16212 1.23185 0.88794 0.98218 0.88840 0.91180 0.91258 0.91405 0.81543 0.74246 0.89643 0.89644 0.95616 0.95603 0.92902 0.81506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.06 36.00 0.36 -0.22 16 2 C -0.24 -2.47 5.91 -104.35 -0.62 -3.09 16 3 C 0.18 1.89 11.00 -17.22 -0.19 1.70 16 4 N -0.55 -7.79 10.46 -13.83 -0.14 -7.93 16 5 C 0.54 8.96 8.38 -322.25 -2.70 6.26 16 6 N -0.65 -10.52 5.40 -13.07 -0.07 -10.59 16 7 C 0.50 9.98 7.79 -10.98 -0.09 9.90 16 8 O -0.46 -11.09 14.18 5.57 0.08 -11.01 16 9 C -0.12 -2.49 5.64 -27.89 -0.16 -2.64 16 10 C 0.04 0.96 4.26 -27.89 -0.12 0.84 16 11 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.34 13.29 55.43 0.74 -26.61 16 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 N -0.50 -8.86 7.87 -13.83 -0.11 -8.97 16 20 C 0.18 2.33 11.00 -17.22 -0.19 2.14 16 21 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 23 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 24 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 25 H 0.42 5.30 8.81 -40.82 -0.36 4.94 16 26 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 27 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.03 0.75 8.10 -51.92 -0.42 0.33 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 278.48 15.07 4.20 4.20 Total: -1.00 -35.71 278.48 -8.14 -43.85 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.70 Total: -0.81 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.11 Total: 1.28 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.41 Total: -54.10 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -35.71 -8.14 -43.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813061864.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.746 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds