Wall clock time and date at job start Sun Mar 29 2020 21:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.38620 * 120.73043 * 2 1 4 4 N 1.32273 * 119.18328 * 179.97438 * 3 2 1 5 5 C 1.32411 * 120.75278 * 359.97438 * 4 3 2 6 6 N 1.38936 * 119.20237 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99753 * 179.72318 * 6 5 4 8 8 O 1.21263 * 120.00209 * 0.28121 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27675 * 7 6 5 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99463 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00445 * 180.02562 * 11 10 9 14 14 N 1.31524 * 120.00004 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00395 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47175 * 89.99791 * 15 13 11 17 17 H 1.48506 * 109.47225 * 210.00239 * 15 13 11 18 18 H 1.48504 * 109.46680 * 329.99683 * 15 13 11 19 19 N 1.32406 * 121.59301 * 0.27530 * 5 4 3 20 20 C 1.32280 * 120.74685 * 359.44548 * 19 5 4 21 21 H 1.09002 * 109.46972 * 90.00247 * 1 2 3 22 22 H 1.09000 * 109.47463 * 209.99868 * 1 2 3 23 23 H 1.09003 * 109.47747 * 330.00124 * 1 2 3 24 24 H 1.07999 * 120.40827 * 359.95466 * 3 2 1 25 25 H 0.97001 * 120.00459 * 0.02562 * 6 5 4 26 26 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 27 27 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 28 28 H 1.08998 * 109.47508 * 300.00200 * 10 9 7 29 29 H 1.09011 * 109.47182 * 60.00188 * 10 9 7 30 30 H 0.96991 * 119.99897 * 179.97438 * 14 13 11 31 31 H 1.08004 * 120.40803 * 180.27638 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2152 1.1916 0.0000 4 7 3.5375 1.1558 0.0005 5 6 4.1836 0.0001 0.0015 6 7 5.5729 0.0001 0.0015 7 6 6.2468 -1.1670 0.0082 8 8 5.6406 -2.2172 0.0091 9 6 7.7539 -1.1671 0.0145 10 6 8.2638 -2.6094 0.0207 11 6 9.7709 -2.6095 0.0276 12 1 10.3108 -1.6741 0.0271 13 6 10.4603 -3.8034 0.0335 14 7 9.8027 -4.9425 0.0336 15 14 12.3282 -3.8034 0.0428 16 1 12.8163 -3.8005 1.4453 17 1 12.8267 -5.0174 -0.6524 18 1 12.8266 -2.5923 -0.6574 19 7 3.5376 -1.1557 -0.0033 20 6 2.2153 -1.1914 0.0016 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3635 0.8900 0.5138 24 1 1.6939 2.1374 -0.0007 25 1 6.0580 0.8402 0.0011 26 1 8.1209 -0.6561 -0.8756 27 1 8.1135 -0.6502 0.9042 28 1 7.8968 -3.1208 0.9106 29 1 7.9042 -3.1259 -0.8694 30 1 10.2877 -5.7824 0.0373 31 1 1.6940 -2.1373 0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813061864.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:30 Heat of formation + Delta-G solvation = -9.109483 kcal Electronic energy + Delta-G solvation = -15531.523576 eV Core-core repulsion = 12812.415826 eV Total energy + Delta-G solvation = -2719.107750 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.33550 -40.54634 -36.40996 -35.57370 -34.73154 -33.82263 -32.85414 -28.61937 -27.25284 -25.83057 -24.41343 -23.02767 -21.45080 -19.54908 -18.97433 -18.29560 -17.08492 -17.01735 -16.49113 -16.05744 -15.85693 -15.29342 -14.95159 -14.41553 -14.38015 -14.20505 -13.75269 -13.28148 -13.09192 -12.81812 -12.48132 -12.12846 -11.96171 -11.92164 -11.74163 -11.65653 -11.30584 -10.90313 -10.56231 -9.98442 -9.50765 -8.17737 -6.31804 -0.13073 0.16853 1.42879 1.45931 1.55260 1.58260 1.60817 2.43387 2.84595 3.15600 3.16450 3.46228 3.72387 3.95766 4.01689 4.11504 4.46106 4.51353 4.71253 4.90855 4.95159 5.03721 5.11079 5.27843 5.49462 5.54284 5.60859 5.84466 6.02343 6.09345 6.16550 6.85925 7.04177 7.29677 7.38435 8.95002 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.077111 B = 0.004232 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.026086 B = 6613.948683 C = 6951.209632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.215 4.215 3 C 0.170 3.830 4 N -0.553 5.553 5 C 0.505 3.495 6 N -0.635 5.635 7 C 0.507 3.493 8 O -0.514 6.514 9 C -0.111 4.111 10 C 0.041 3.959 11 C -0.542 4.542 12 H 0.079 0.921 13 C -0.007 4.007 14 N -0.938 5.938 15 Si 0.975 3.025 16 H -0.272 1.272 17 H -0.287 1.287 18 H -0.255 1.255 19 N -0.550 5.550 20 C 0.151 3.849 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.214 0.786 25 H 0.436 0.564 26 H 0.113 0.887 27 H 0.113 0.887 28 H -0.015 1.015 29 H -0.015 1.015 30 H 0.263 0.737 31 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.036 15.586 -0.067 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.221 4.221 3 C 0.003 3.997 4 N -0.274 5.274 5 C 0.149 3.851 6 N -0.287 5.287 7 C 0.295 3.705 8 O -0.384 6.384 9 C -0.151 4.151 10 C 0.004 3.996 11 C -0.580 4.580 12 H 0.097 0.903 13 C -0.205 4.205 14 N -0.578 5.578 15 Si 0.799 3.201 16 H -0.197 1.197 17 H -0.213 1.213 18 H -0.178 1.178 19 N -0.270 5.270 20 C -0.015 4.015 21 H 0.103 0.897 22 H 0.096 0.904 23 H 0.110 0.890 24 H 0.230 0.770 25 H 0.277 0.723 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.071 0.929 31 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -16.298 14.594 -0.077 21.877 hybrid contribution 0.264 -0.339 0.009 0.429 sum -16.034 14.255 -0.068 21.455 Atomic orbital electron populations 1.20652 0.85911 1.04713 1.03779 1.21952 1.01095 0.94207 1.04868 1.23698 0.87124 1.00254 0.88609 1.67884 1.12384 1.27281 1.19816 1.19769 0.87192 0.85635 0.92457 1.43388 1.01932 1.11602 1.71759 1.21849 0.91680 0.82414 0.74562 1.90766 1.70569 1.32223 1.44878 1.21684 0.86617 1.01064 1.05698 1.18717 0.95103 0.90836 0.94990 1.21694 0.92096 0.93415 1.50819 0.90329 1.26142 1.04562 0.95139 0.94640 1.70183 1.37928 0.98207 1.51434 0.85304 0.78295 0.78037 0.78496 1.19744 1.21283 1.17825 1.68462 1.11953 1.28909 1.17692 1.23641 0.87784 1.00435 0.89611 0.89676 0.90382 0.88982 0.76972 0.72339 0.86899 0.86879 0.99706 0.99690 0.92868 0.79934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.06 71.23 0.72 -0.06 16 2 C -0.22 -3.85 5.91 -19.69 -0.12 -3.97 16 3 C 0.17 3.13 11.00 84.72 0.93 4.06 16 4 N -0.55 -14.69 10.46 -197.67 -2.07 -16.76 16 5 C 0.50 16.92 8.38 261.29 2.19 19.11 16 6 N -0.63 -20.67 5.40 -313.66 -1.69 -22.36 16 7 C 0.51 20.90 7.79 87.66 0.68 21.58 16 8 O -0.51 -26.44 14.18 -2.98 -0.04 -26.48 16 9 C -0.11 -4.46 5.64 29.85 0.17 -4.29 16 10 C 0.04 2.30 4.26 29.85 0.13 2.43 16 11 C -0.54 -30.81 9.11 25.60 0.23 -30.57 16 12 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 13 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 14 N -0.94 -59.77 13.29 21.45 0.28 -59.49 16 15 Si 0.97 44.41 29.54 68.60 2.03 46.43 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 19 N -0.55 -20.14 7.87 -197.67 -1.56 -21.70 16 20 C 0.15 3.92 11.00 84.72 0.93 4.85 16 21 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 22 H 0.08 0.58 8.10 -2.39 -0.02 0.56 16 23 H 0.09 0.40 8.10 -2.39 -0.02 0.39 16 24 H 0.21 1.84 8.06 -2.91 -0.02 1.81 16 25 H 0.44 10.59 8.81 -92.71 -0.82 9.77 16 26 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 27 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 28 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 29 H -0.02 -0.97 8.10 -2.38 -0.02 -0.99 16 30 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -82.76 278.48 3.61 -79.15 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.33 Total: 8.02 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.33 Total: 13.18 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -5.03 Total: -120.30 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.04 Total: -26.48 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -82.76 3.61 -79.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813061864.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.041 kcal (2) G-P(sol) polarization free energy of solvation -82.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds