Wall clock time and date at job start Sun Mar 29 2020 21:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.08996 * 109.46700 * 305.88745 * 3 2 1 5 5 C 1.50697 * 109.47121 * 185.88328 * 3 2 1 6 6 H 1.07998 * 120.00194 * 333.65850 * 5 3 2 7 7 C 1.37874 * 119.99707 * 153.65348 * 5 3 2 8 8 N 1.31515 * 120.00295 * 6.55248 * 7 5 3 9 9 Si 1.86802 * 120.00000 * 186.54636 * 7 5 3 10 10 H 1.48501 * 109.47323 * 270.00244 * 9 7 5 11 11 H 1.48503 * 109.46976 * 30.00693 * 9 7 5 12 12 H 1.48504 * 109.47222 * 150.00225 * 9 7 5 13 13 N 1.46497 * 109.46844 * 65.88162 * 3 2 1 14 14 C 1.37819 * 120.00475 * 275.00017 * 13 3 2 15 15 N 1.32716 * 119.00453 * 359.73282 * 14 13 3 16 16 C 1.31889 * 120.92999 * 179.75933 * 15 14 13 17 17 C 1.40420 * 118.97216 * 0.50158 * 16 15 14 18 18 C 1.46812 * 120.89461 * 179.77384 * 17 16 15 19 19 O 1.21299 * 119.99449 * 179.97438 * 18 17 16 20 20 C 1.40417 * 118.20612 * 359.75410 * 17 16 15 21 21 N 1.31888 * 118.97480 * 359.97438 * 20 17 16 22 22 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 23 23 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 25 25 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 26 26 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 27 27 H 0.97003 * 119.99676 * 355.21183 * 8 7 5 28 28 H 0.97009 * 119.99518 * 95.00661 * 13 3 2 29 29 H 1.08001 * 120.51788 * 180.25889 * 16 15 14 30 30 H 1.07997 * 120.00003 * 359.97438 * 18 17 16 31 31 H 1.08002 * 120.50978 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5932 1.9858 -0.8326 5 6 3.5399 1.4450 -0.1456 6 1 4.1161 0.5940 0.1864 7 6 4.1766 2.5336 -0.7028 8 7 3.4929 3.6201 -0.9885 9 14 6.0105 2.4654 -1.0519 10 1 6.7588 2.9491 0.1361 11 1 6.4059 1.0653 -1.3497 12 1 6.3245 3.3275 -2.2196 13 7 1.6707 2.0910 1.2606 14 6 0.4278 2.6701 1.3995 15 7 -0.4171 2.6335 0.3767 16 6 -1.6177 3.1715 0.4696 17 6 -1.9913 3.7980 1.6694 18 6 -3.3153 4.4149 1.8173 19 8 -3.6212 4.9514 2.8612 20 6 -1.0645 3.8183 2.7241 21 7 0.1137 3.2518 2.5503 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.5299 3.6318 -0.8723 28 1 2.3011 2.1129 1.9977 29 1 -2.3015 3.1342 -0.3656 30 1 -4.0169 4.3909 0.9965 31 1 -1.3128 4.2905 3.6632 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882190956.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:57 Heat of formation + Delta-G solvation = 10.139484 kcal Electronic energy + Delta-G solvation = -16321.114569 eV Core-core repulsion = 13602.841516 eV Total energy + Delta-G solvation = -2718.273053 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.55531 -38.47723 -36.50276 -33.40109 -32.91187 -31.90622 -30.14051 -26.83801 -24.46664 -23.99573 -23.07950 -21.30660 -20.16177 -18.07925 -17.31526 -16.84685 -16.02203 -15.10671 -14.90500 -14.32524 -14.12061 -13.92302 -13.79286 -13.18021 -13.08931 -12.84131 -12.50410 -11.42105 -11.17538 -11.01148 -10.88770 -10.75676 -10.37781 -10.27418 -10.15956 -9.54546 -9.43167 -8.88900 -8.76657 -8.58488 -7.32028 -6.71408 -4.53444 0.97719 1.67244 2.77439 3.27176 3.30643 3.47782 3.67094 4.28502 4.39947 4.50931 4.60586 4.92719 5.07041 5.30202 5.44426 5.75926 5.85951 5.89072 6.02836 6.08877 6.50657 6.59322 6.67771 6.78050 6.91203 7.13152 7.41322 7.57612 7.61708 7.84903 8.10689 8.33613 8.52759 8.92599 9.27314 10.66314 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.036056 B = 0.006638 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.388842 B = 4216.856377 C = 4600.774647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C 0.243 3.757 4 H 0.064 0.936 5 C -0.608 4.608 6 H 0.060 0.940 7 C 0.033 3.967 8 N -0.882 5.882 9 Si 1.074 2.926 10 H -0.285 1.285 11 H -0.284 1.284 12 H -0.282 1.282 13 N -0.641 5.641 14 C 0.578 3.422 15 N -0.564 5.564 16 C 0.242 3.758 17 C -0.407 4.407 18 C 0.405 3.595 19 O -0.490 6.490 20 C 0.254 3.746 21 N -0.595 5.595 22 H 0.059 0.941 23 H 0.029 0.971 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.277 0.723 28 H 0.402 0.598 29 H 0.165 0.835 30 H 0.096 0.904 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.300 -2.332 1.273 8.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C 0.144 3.856 4 H 0.082 0.918 5 C -0.647 4.647 6 H 0.078 0.922 7 C -0.177 4.177 8 N -0.514 5.514 9 Si 0.901 3.099 10 H -0.212 1.212 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.267 5.267 14 C 0.222 3.778 15 N -0.287 5.287 16 C 0.067 3.933 17 C -0.419 4.419 18 C 0.265 3.735 19 O -0.365 6.365 20 C 0.081 3.919 21 N -0.319 5.319 22 H 0.078 0.922 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.239 0.761 29 H 0.182 0.818 30 H 0.112 0.888 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.008 -1.774 0.936 6.334 hybrid contribution -1.860 -0.507 0.916 2.134 sum -7.867 -2.281 1.852 8.398 Atomic orbital electron populations 1.21846 0.97117 0.98635 1.01837 1.21827 0.94254 0.98769 1.00802 1.19225 0.95223 0.88861 0.82326 0.91769 1.22167 0.91106 1.06360 1.45064 0.92201 1.26111 1.07343 0.91687 0.92595 1.70748 1.10146 1.27094 1.43453 0.83476 0.73423 0.75849 0.77200 1.21169 1.20995 1.20701 1.47182 1.08564 1.52054 1.18943 1.20217 0.88233 0.85131 0.84173 1.68233 1.04481 1.25279 1.30692 1.23191 0.91227 0.84415 0.94435 1.21944 1.01870 1.18010 1.00047 1.23392 0.86787 0.73739 0.89574 1.90490 1.78379 1.36364 1.31275 1.23116 0.85895 0.85869 0.96979 1.68122 1.21075 1.18228 1.24483 0.92212 0.95164 0.94036 0.91812 0.93672 0.91129 0.76054 0.81774 0.88760 0.81923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.45 37.16 0.31 -2.14 16 2 C -0.12 -2.36 5.58 -26.73 -0.15 -2.51 16 3 C 0.24 5.58 1.82 -69.08 -0.13 5.46 16 4 H 0.06 1.63 6.25 -51.93 -0.32 1.31 16 5 C -0.61 -15.36 8.49 -34.44 -0.29 -15.65 16 6 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 7 C 0.03 0.85 5.45 -17.82 -0.10 0.76 16 8 N -0.88 -24.86 13.63 55.43 0.76 -24.11 16 9 Si 1.07 23.17 29.91 -169.99 -5.08 18.09 16 10 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.64 -14.01 5.14 -56.99 -0.29 -14.30 16 14 C 0.58 11.89 7.01 -323.09 -2.26 9.63 16 15 N -0.56 -10.61 6.31 -13.60 -0.09 -10.70 16 16 C 0.24 3.56 11.10 -16.71 -0.19 3.37 16 17 C -0.41 -5.92 5.90 -104.79 -0.62 -6.54 16 18 C 0.40 4.95 11.48 34.20 0.39 5.34 16 19 O -0.49 -7.66 17.25 5.54 0.10 -7.56 16 20 C 0.25 4.24 10.88 -16.71 -0.18 4.06 16 21 N -0.60 -11.63 10.43 -13.60 -0.14 -11.78 16 22 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.04 0.78 5.58 -51.93 -0.29 0.49 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.28 7.94 6.77 -40.82 -0.28 7.66 16 28 H 0.40 8.78 8.70 -40.82 -0.36 8.43 16 29 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.10 0.75 8.06 -52.49 -0.42 0.32 16 31 H 0.16 2.40 7.73 -52.49 -0.41 2.00 16 LS Contribution 271.24 15.07 4.09 4.09 Total: -1.00 -29.43 271.24 -7.25 -36.68 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.37 Total: 7.83 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -3.21 Total: 1.77 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.23 Total: -60.88 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.10 Total: -7.56 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.08 Total: 18.09 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.43 -7.25 -36.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882190956.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.819 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds