Wall clock time and date at job start Sun Mar 29 2020 21:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.08996 * 109.46700 * 305.88745 * 3 2 1 5 5 C 1.50697 * 109.47121 * 185.88328 * 3 2 1 6 6 H 1.07998 * 120.00194 * 333.65850 * 5 3 2 7 7 C 1.37874 * 119.99707 * 153.65348 * 5 3 2 8 8 N 1.31515 * 120.00295 * 6.55248 * 7 5 3 9 9 Si 1.86802 * 120.00000 * 186.54636 * 7 5 3 10 10 H 1.48501 * 109.47323 * 270.00244 * 9 7 5 11 11 H 1.48503 * 109.46976 * 30.00693 * 9 7 5 12 12 H 1.48504 * 109.47222 * 150.00225 * 9 7 5 13 13 N 1.46497 * 109.46844 * 65.88162 * 3 2 1 14 14 C 1.37819 * 120.00475 * 275.00017 * 13 3 2 15 15 N 1.32716 * 119.00453 * 359.73282 * 14 13 3 16 16 C 1.31889 * 120.92999 * 179.75933 * 15 14 13 17 17 C 1.40420 * 118.97216 * 0.50158 * 16 15 14 18 18 C 1.46812 * 120.89461 * 179.77384 * 17 16 15 19 19 O 1.21299 * 119.99449 * 179.97438 * 18 17 16 20 20 C 1.40417 * 118.20612 * 359.75410 * 17 16 15 21 21 N 1.31888 * 118.97480 * 359.97438 * 20 17 16 22 22 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 23 23 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 25 25 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 26 26 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 27 27 H 0.97003 * 119.99676 * 355.21183 * 8 7 5 28 28 H 0.97009 * 119.99518 * 95.00661 * 13 3 2 29 29 H 1.08001 * 120.51788 * 180.25889 * 16 15 14 30 30 H 1.07997 * 120.00003 * 359.97438 * 18 17 16 31 31 H 1.08002 * 120.50978 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5932 1.9858 -0.8326 5 6 3.5399 1.4450 -0.1456 6 1 4.1161 0.5940 0.1864 7 6 4.1766 2.5336 -0.7028 8 7 3.4929 3.6201 -0.9885 9 14 6.0105 2.4654 -1.0519 10 1 6.7588 2.9491 0.1361 11 1 6.4059 1.0653 -1.3497 12 1 6.3245 3.3275 -2.2196 13 7 1.6707 2.0910 1.2606 14 6 0.4278 2.6701 1.3995 15 7 -0.4171 2.6335 0.3767 16 6 -1.6177 3.1715 0.4696 17 6 -1.9913 3.7980 1.6694 18 6 -3.3153 4.4149 1.8173 19 8 -3.6212 4.9514 2.8612 20 6 -1.0645 3.8183 2.7241 21 7 0.1137 3.2518 2.5503 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.5299 3.6318 -0.8723 28 1 2.3011 2.1129 1.9977 29 1 -2.3015 3.1342 -0.3656 30 1 -4.0169 4.3909 0.9965 31 1 -1.3128 4.2905 3.6632 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882190956.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:56 Heat of formation + Delta-G solvation = -8.051638 kcal Electronic energy + Delta-G solvation = -16321.903395 eV Core-core repulsion = 13602.841516 eV Total energy + Delta-G solvation = -2719.061879 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.92508 -39.66047 -38.11992 -34.79764 -34.67303 -33.47376 -31.55853 -28.54782 -25.90955 -25.31711 -24.76878 -22.58682 -21.73983 -19.67904 -18.81701 -18.38933 -17.23958 -16.59752 -16.15272 -15.75699 -15.68572 -15.52230 -15.11937 -14.83690 -14.42573 -14.27016 -14.12874 -12.93832 -12.69783 -12.64996 -12.55453 -12.32259 -11.93755 -11.85270 -11.62197 -11.09909 -10.77632 -10.65651 -10.56701 -9.98302 -8.87612 -8.72122 -6.56763 -0.27640 0.37427 1.54526 1.58718 1.66006 1.79520 2.14092 2.50964 3.04877 3.17037 3.34643 3.53304 3.78861 3.90958 4.13718 4.30106 4.35421 4.54628 4.72602 4.83534 4.91977 5.10767 5.18525 5.20169 5.43049 5.55074 5.73216 6.00905 6.08110 6.31397 6.43322 6.61976 6.77069 7.31693 7.44950 8.62089 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.036056 B = 0.006638 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.388842 B = 4216.856377 C = 4600.774647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C 0.254 3.746 4 H 0.036 0.964 5 C -0.617 4.617 6 H 0.058 0.942 7 C -0.013 4.013 8 N -0.915 5.915 9 Si 1.118 2.882 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.285 1.285 13 N -0.659 5.659 14 C 0.565 3.435 15 N -0.585 5.585 16 C 0.242 3.758 17 C -0.392 4.392 18 C 0.419 3.581 19 O -0.520 6.520 20 C 0.234 3.766 21 N -0.619 5.619 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.030 0.970 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.262 0.738 28 H 0.397 0.603 29 H 0.217 0.783 30 H 0.161 0.839 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.071 -2.642 0.836 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C 0.153 3.847 4 H 0.053 0.947 5 C -0.655 4.655 6 H 0.076 0.924 7 C -0.216 4.216 8 N -0.550 5.550 9 Si 0.940 3.060 10 H -0.203 1.203 11 H -0.190 1.190 12 H -0.211 1.211 13 N -0.287 5.287 14 C 0.210 3.790 15 N -0.309 5.309 16 C 0.070 3.930 17 C -0.403 4.403 18 C 0.281 3.719 19 O -0.397 6.397 20 C 0.063 3.937 21 N -0.344 5.344 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.233 0.767 29 H 0.234 0.766 30 H 0.177 0.823 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.859 -2.073 0.519 8.145 hybrid contribution -1.536 -0.367 1.128 1.940 sum -9.395 -2.440 1.647 9.846 Atomic orbital electron populations 1.21681 0.95166 0.99884 1.01198 1.21761 0.95989 0.96878 1.00658 1.18932 0.93864 0.89995 0.81892 0.94654 1.22461 0.92618 1.05976 1.44483 0.92396 1.27374 1.10744 0.91345 0.92126 1.70871 1.09338 1.28377 1.46398 0.82911 0.69313 0.76743 0.77041 1.20344 1.18963 1.21107 1.46468 1.09698 1.54289 1.18264 1.20169 0.88144 0.85612 0.85081 1.68268 1.05856 1.26465 1.30286 1.24053 0.90358 0.82678 0.95872 1.22412 1.02694 1.16214 0.99011 1.24099 0.85926 0.71599 0.90295 1.90509 1.78569 1.37467 1.33157 1.23518 0.85711 0.85919 0.98510 1.68042 1.22729 1.19086 1.24546 0.92333 0.92840 0.95071 0.91834 0.93750 0.92773 0.76667 0.76648 0.82336 0.80691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.22 8.45 71.98 0.61 -3.61 16 2 C -0.11 -4.57 5.58 30.59 0.17 -4.40 16 3 C 0.25 11.95 1.82 44.25 0.08 12.03 16 4 H 0.04 1.87 6.25 -2.39 -0.01 1.85 16 5 C -0.62 -31.81 8.49 25.60 0.22 -31.59 16 6 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 7 C -0.01 -0.69 5.45 84.65 0.46 -0.23 16 8 N -0.92 -53.15 13.63 21.45 0.29 -52.86 16 9 Si 1.12 47.05 29.91 68.60 2.05 49.10 16 10 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 12 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 13 N -0.66 -29.73 5.14 -334.20 -1.72 -31.45 16 14 C 0.57 23.53 7.01 261.58 1.83 25.37 16 15 N -0.59 -21.55 6.31 -196.93 -1.24 -22.80 16 16 C 0.24 6.40 11.10 85.22 0.95 7.35 16 17 C -0.39 -10.29 5.90 -19.97 -0.12 -10.41 16 18 C 0.42 8.38 11.48 70.06 0.80 9.19 16 19 O -0.52 -14.64 17.25 -3.09 -0.05 -14.70 16 20 C 0.23 7.57 10.88 85.22 0.93 8.50 16 21 N -0.62 -24.44 10.43 -196.94 -2.05 -26.49 16 22 H 0.06 2.02 7.70 -2.38 -0.02 2.00 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.03 1.13 5.58 -2.39 -0.01 1.12 16 25 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.26 15.63 6.77 -92.71 -0.63 15.00 16 28 H 0.40 18.19 8.70 -92.70 -0.81 17.38 16 29 H 0.22 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 31 H 0.18 5.05 7.73 -2.91 -0.02 5.03 16 Total: -1.00 -66.44 271.24 3.70 -62.74 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.49 Total: 24.25 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 5.93 Total: 12.19 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -4.72 Total: -133.59 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.05 Total: -14.70 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.05 Total: 49.10 kcal Total: -66.44 3.70 -62.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882190956.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.693 kcal (2) G-P(sol) polarization free energy of solvation -66.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds