Wall clock time and date at job start Sun Mar 29 2020 21:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47213 * 2 1 4 4 H 1.09005 * 109.46820 * 54.35779 * 3 2 1 5 5 C 1.50693 * 109.47263 * 174.36021 * 3 2 1 6 6 H 1.08004 * 119.99766 * 25.65950 * 5 3 2 7 7 C 1.37871 * 120.00146 * 205.66114 * 5 3 2 8 8 N 1.31515 * 120.00179 * 353.27498 * 7 5 3 9 9 Si 1.86802 * 120.00177 * 173.27381 * 7 5 3 10 10 H 1.48499 * 109.47448 * 59.99681 * 9 7 5 11 11 H 1.48505 * 109.47147 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46825 * 299.99910 * 9 7 5 13 13 N 1.46497 * 109.47048 * 294.36125 * 3 2 1 14 14 C 1.37825 * 120.00210 * 84.99836 * 13 3 2 15 15 N 1.32723 * 119.00526 * 359.72857 * 14 13 3 16 16 C 1.31888 * 120.92968 * 179.75441 * 15 14 13 17 17 C 1.40424 * 118.97045 * 0.50823 * 16 15 14 18 18 C 1.46808 * 120.89560 * 179.77104 * 17 16 15 19 19 O 1.21293 * 119.99981 * 179.97438 * 18 17 16 20 20 C 1.40415 * 118.20877 * 359.74796 * 17 16 15 21 21 N 1.31886 * 118.97517 * 359.97438 * 20 17 16 22 22 H 1.09001 * 109.47181 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47426 * 299.99438 * 1 2 3 24 24 H 1.08997 * 109.47574 * 60.00080 * 1 2 3 25 25 H 1.09004 * 109.46770 * 240.00271 * 2 1 3 26 26 H 1.09000 * 109.46730 * 120.00218 * 2 1 3 27 27 H 0.97000 * 119.99658 * 354.66075 * 8 7 5 28 28 H 0.96996 * 119.99876 * 264.99940 * 13 3 2 29 29 H 1.07997 * 120.51567 * 180.25974 * 16 15 14 30 30 H 1.08007 * 119.99554 * 359.97438 * 18 17 16 31 31 H 1.08003 * 120.51243 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9846 0.8352 5 6 3.5405 1.4448 0.1396 6 1 4.1144 0.5897 -0.1858 7 6 4.1806 2.5384 0.6828 8 7 3.4999 3.6299 0.9566 9 14 6.0148 2.4699 1.0299 10 1 6.7491 2.2165 -0.2358 11 1 6.4577 3.7637 1.6091 12 1 6.2958 1.3749 1.9928 13 7 1.6657 2.0928 -1.2582 14 6 0.4222 2.6720 -1.3913 15 7 -0.4227 2.6244 -0.3688 16 6 -1.6203 3.1705 -0.4529 17 6 -1.9987 3.7988 -1.6504 18 6 -3.3232 4.4158 -1.7921 19 8 -3.6330 4.9547 -2.8337 20 6 -1.0758 3.8214 -2.7085 21 7 0.1038 3.2563 -2.5396 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 2.5651 3.6941 0.7058 28 1 2.2930 2.1156 -1.9977 29 1 -2.3009 3.1315 0.3847 30 1 -4.0218 4.3899 -0.9688 31 1 -1.3281 4.2943 -3.6462 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882190957.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:59 Heat of formation + Delta-G solvation = -7.998800 kcal Electronic energy + Delta-G solvation = -16325.676342 eV Core-core repulsion = 13606.616755 eV Total energy + Delta-G solvation = -2719.059588 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.92792 -39.66326 -38.12380 -34.79567 -34.67034 -33.47874 -31.55924 -28.55810 -25.90980 -25.32055 -24.76040 -22.58776 -21.72964 -19.69156 -18.80914 -18.40279 -17.24231 -16.59680 -16.16413 -15.74944 -15.68010 -15.52516 -15.12696 -14.83452 -14.43093 -14.26596 -14.12687 -12.91521 -12.69303 -12.64101 -12.55673 -12.32474 -11.95861 -11.85462 -11.61893 -11.12536 -10.74620 -10.68748 -10.56701 -9.98211 -8.87769 -8.71137 -6.57584 -0.27834 0.37272 1.55178 1.57984 1.65908 1.80363 2.13428 2.52296 3.04654 3.15966 3.34359 3.53186 3.78718 3.90683 4.13577 4.30158 4.35669 4.54644 4.72525 4.83406 4.92249 5.10913 5.18525 5.20256 5.42953 5.55331 5.73384 6.00422 6.08761 6.31103 6.42021 6.61899 6.76747 7.31231 7.44721 8.61766 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.036044 B = 0.006648 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.647518 B = 4211.044955 C = 4599.583358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C 0.254 3.746 4 H 0.034 0.966 5 C -0.617 4.617 6 H 0.058 0.942 7 C -0.013 4.013 8 N -0.915 5.915 9 Si 1.115 2.885 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.660 5.660 14 C 0.565 3.435 15 N -0.585 5.585 16 C 0.242 3.758 17 C -0.392 4.392 18 C 0.419 3.581 19 O -0.520 6.520 20 C 0.234 3.766 21 N -0.619 5.619 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.030 0.970 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.262 0.738 28 H 0.397 0.603 29 H 0.217 0.783 30 H 0.161 0.839 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 -2.604 -0.922 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C 0.154 3.846 4 H 0.052 0.948 5 C -0.656 4.656 6 H 0.076 0.924 7 C -0.216 4.216 8 N -0.549 5.549 9 Si 0.937 3.063 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.288 5.288 14 C 0.210 3.790 15 N -0.309 5.309 16 C 0.070 3.930 17 C -0.403 4.403 18 C 0.281 3.719 19 O -0.397 6.397 20 C 0.063 3.937 21 N -0.344 5.344 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.233 0.767 29 H 0.233 0.767 30 H 0.177 0.823 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.858 -2.085 -0.504 8.146 hybrid contribution -1.518 -0.325 -1.242 1.988 sum -9.377 -2.410 -1.746 9.838 Atomic orbital electron populations 1.21680 0.95158 0.99856 1.01208 1.21754 0.95997 0.96851 1.00661 1.18933 0.93756 0.90007 0.81919 0.94779 1.22472 0.92449 1.04762 1.45870 0.92363 1.27373 1.10287 0.91626 0.92286 1.70886 1.11212 1.28753 1.44056 0.82955 0.69432 0.76380 0.77582 1.19576 1.21473 1.19077 1.46486 1.09788 1.54273 1.18275 1.20178 0.88132 0.85616 0.85099 1.68281 1.05974 1.26333 1.30268 1.24053 0.90354 0.82652 0.95924 1.22413 1.02692 1.16219 0.98971 1.24097 0.85878 0.71618 0.90330 1.90508 1.78405 1.37389 1.33380 1.23519 0.85710 0.85921 0.98503 1.68044 1.22605 1.19078 1.24626 0.92860 0.92351 0.95051 0.93725 0.91833 0.92813 0.76658 0.76669 0.82346 0.80671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.22 8.44 71.98 0.61 -3.62 16 2 C -0.11 -4.56 5.58 30.59 0.17 -4.39 16 3 C 0.25 12.00 1.72 44.24 0.08 12.08 16 4 H 0.03 1.81 6.48 -2.38 -0.02 1.79 16 5 C -0.62 -31.83 8.49 25.60 0.22 -31.61 16 6 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 7 C -0.01 -0.68 5.45 84.65 0.46 -0.22 16 8 N -0.91 -53.24 13.56 21.45 0.29 -52.95 16 9 Si 1.12 46.92 29.91 68.60 2.05 48.97 16 10 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 13 N -0.66 -29.72 5.09 -334.19 -1.70 -31.41 16 14 C 0.57 23.48 7.02 261.58 1.84 25.32 16 15 N -0.58 -21.55 6.26 -196.92 -1.23 -22.78 16 16 C 0.24 6.40 11.10 85.22 0.95 7.34 16 17 C -0.39 -10.27 5.90 -19.97 -0.12 -10.38 16 18 C 0.42 8.37 11.48 70.06 0.80 9.17 16 19 O -0.52 -14.61 17.25 -3.07 -0.05 -14.67 16 20 C 0.23 7.55 10.88 85.22 0.93 8.47 16 21 N -0.62 -24.34 10.43 -196.93 -2.05 -26.40 16 22 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 23 H 0.06 2.02 7.67 -2.39 -0.02 2.00 16 24 H 0.03 1.14 5.57 -2.39 -0.01 1.13 16 25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.26 15.66 6.93 -92.71 -0.64 15.02 16 28 H 0.40 18.14 8.70 -92.71 -0.81 17.33 16 29 H 0.22 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 31 H 0.18 5.04 7.73 -2.91 -0.02 5.02 16 Total: -1.00 -66.49 271.32 3.70 -62.79 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.47 Total: 24.28 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.93 Total: 12.16 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -4.70 Total: -133.54 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.05 Total: -14.67 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.05 Total: 48.97 kcal Total: -66.49 3.70 -62.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882190957.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.790 kcal (2) G-P(sol) polarization free energy of solvation -66.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds