Wall clock time and date at job start Sun Mar 29 2020 22:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37096 * 119.99916 * 2 1 4 4 H 1.08002 * 119.99912 * 204.38932 * 3 2 1 5 5 C 1.38948 * 120.00210 * 24.38858 * 3 2 1 6 6 N 1.31414 * 119.99927 * 12.64888 * 5 3 2 7 7 Si 1.86805 * 120.00011 * 192.64152 * 5 3 2 8 8 H 1.48498 * 109.47021 * 90.00685 * 7 5 3 9 9 H 1.48505 * 109.46888 * 210.00345 * 7 5 3 10 10 H 1.48496 * 109.46991 * 329.99955 * 7 5 3 11 11 C 1.34777 * 120.00052 * 179.97438 * 2 1 3 12 12 O 1.21288 * 119.99962 * 179.97438 * 11 2 1 13 13 C 1.50705 * 119.99833 * 0.02562 * 11 2 1 14 14 N 1.46499 * 109.46866 * 179.97438 * 13 11 2 15 15 C 1.39007 * 119.99529 * 180.02562 * 14 13 11 16 16 C 1.39133 * 119.70894 * 359.97438 * 15 14 13 17 17 C 1.38302 * 119.09636 * 180.02562 * 16 15 14 18 18 C 1.38878 * 118.50433 * 0.02562 * 17 16 15 19 19 C 1.38014 * 119.33301 * 0.27987 * 18 17 16 20 20 N 1.31974 * 120.85458 * 359.44413 * 19 18 17 21 21 H 1.09001 * 109.47167 * 265.86641 * 1 2 3 22 22 H 1.09003 * 109.46834 * 25.86775 * 1 2 3 23 23 H 1.08997 * 109.47461 * 145.86553 * 1 2 3 24 24 H 0.96993 * 119.99918 * 179.97438 * 6 5 3 25 25 H 1.09002 * 109.46999 * 59.99908 * 13 11 2 26 26 H 1.08997 * 109.47043 * 299.99946 * 13 11 2 27 27 H 0.96992 * 120.00482 * 0.02562 * 14 13 11 28 28 H 1.07998 * 120.45003 * 0.02681 * 16 15 14 29 29 H 1.07999 * 120.74449 * 180.02562 * 17 16 15 30 30 H 1.08004 * 120.33033 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.57922 * 179.70232 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2290 -0.3862 5 6 1.5487 2.3369 0.4969 6 7 0.4345 2.2492 1.1881 7 14 2.3237 4.0073 0.1825 8 1 1.7869 4.5720 -1.0817 9 1 2.0034 4.9214 1.3082 10 1 3.7968 3.8564 0.0712 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3853 -2.4723 0.0005 14 7 2.3374 -3.5858 0.0005 15 6 1.8739 -4.8964 0.0000 16 6 0.5047 -5.1436 0.0000 17 6 0.0576 -6.4523 0.0000 18 6 0.9983 -7.4740 0.0005 19 6 2.3414 -7.1565 0.0069 20 7 2.7395 -5.8983 0.0015 21 1 -0.3633 -0.0741 1.0250 22 1 -0.3633 0.9247 -0.4484 23 1 -0.3634 -0.8506 -0.5766 24 1 0.0147 3.0516 1.5352 25 1 0.7590 -2.5302 -0.8897 26 1 0.7584 -2.5298 0.8903 27 1 3.2910 -3.4086 0.0009 28 1 -0.1993 -4.3246 0.0000 29 1 -0.9992 -6.6747 -0.0004 30 1 0.6818 -8.5067 0.0010 31 1 3.0763 -7.9480 0.0123 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900450708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:12 Heat of formation + Delta-G solvation = 17.384242 kcal Electronic energy + Delta-G solvation = -15868.244749 eV Core-core repulsion = 13150.285852 eV Total energy + Delta-G solvation = -2717.958896 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.99163 -38.62068 -35.46605 -34.52337 -32.26496 -31.75975 -29.83626 -27.20178 -26.04896 -24.24160 -23.28562 -21.97543 -19.19582 -17.73980 -16.95571 -16.52845 -15.73579 -15.44855 -15.12426 -14.64928 -14.42475 -13.92656 -13.84337 -13.48845 -12.88592 -12.71653 -12.18998 -11.70036 -11.64125 -11.46927 -11.35743 -10.94442 -10.42157 -10.39828 -10.10527 -9.58964 -9.26076 -9.11190 -8.62567 -7.80271 -7.47234 -6.42980 -4.00103 1.44445 1.62262 3.10582 3.20368 3.24718 3.38324 3.71029 4.07842 4.10895 4.74649 4.80894 4.96526 5.01653 5.29045 5.34630 5.44049 5.62828 5.66336 5.81322 5.88662 6.15182 6.21205 6.41397 6.71706 6.72816 7.07872 7.22775 7.47696 7.94029 8.00812 8.34643 8.42562 9.05015 9.27594 9.79977 10.61818 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.064531 B = 0.004939 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.798637 B = 5668.010753 C = 6031.332085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.437 5.437 3 C -0.309 4.309 4 H 0.100 0.900 5 C 0.033 3.967 6 N -0.879 5.879 7 Si 0.929 3.071 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.268 1.268 11 C 0.436 3.564 12 O -0.585 6.585 13 C 0.117 3.883 14 N -0.702 5.702 15 C 0.411 3.589 16 C -0.247 4.247 17 C -0.033 4.033 18 C -0.251 4.251 19 C 0.149 3.851 20 N -0.550 5.550 21 H 0.055 0.945 22 H 0.078 0.922 23 H 0.027 0.973 24 H 0.269 0.731 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.416 0.584 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 -12.195 -2.105 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.155 5.155 3 C -0.437 4.437 4 H 0.118 0.882 5 C -0.171 4.171 6 N -0.518 5.518 7 Si 0.755 3.245 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.193 1.193 11 C 0.223 3.777 12 O -0.470 6.470 13 C -0.012 4.012 14 N -0.336 5.336 15 C 0.174 3.826 16 C -0.272 4.272 17 C -0.059 4.059 18 C -0.275 4.275 19 C -0.009 4.009 20 N -0.268 5.268 21 H 0.074 0.926 22 H 0.097 0.903 23 H 0.046 0.954 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.255 0.745 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.737 -11.618 -2.009 12.368 hybrid contribution -0.542 0.761 0.002 0.934 sum -4.279 -10.857 -2.006 11.841 Atomic orbital electron populations 1.21568 0.80969 1.00290 1.00906 1.43513 1.05607 1.04529 1.61895 1.19680 1.00799 0.83855 1.39391 0.88233 1.25377 0.96569 1.00286 0.94862 1.69983 1.19114 1.29887 1.32819 0.85881 0.79730 0.80953 0.77908 1.20248 1.20846 1.19263 1.19850 0.88166 0.84753 0.84902 1.90522 1.13740 1.86487 1.56222 1.21091 0.91854 0.86128 1.02105 1.44393 1.10645 1.00422 1.78096 1.18401 0.88938 0.85695 0.89542 1.21444 0.94753 0.98214 1.12798 1.21261 0.99681 0.92007 0.92938 1.21704 0.94378 0.99893 1.11499 1.22346 0.94436 0.91986 0.92142 1.67173 1.38596 0.99812 1.21213 0.92610 0.90345 0.95413 0.92052 0.90444 0.90134 0.74492 0.85115 0.85376 0.85635 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.24 8.44 59.85 0.51 2.74 16 2 N -0.44 -10.84 3.01 -122.19 -0.37 -11.21 16 3 C -0.31 -8.44 9.24 -14.93 -0.14 -8.58 16 4 H 0.10 2.85 7.45 -52.49 -0.39 2.46 16 5 C 0.03 0.85 5.04 -17.47 -0.09 0.76 16 6 N -0.88 -22.79 10.83 55.50 0.60 -22.19 16 7 Si 0.93 20.31 29.57 -169.99 -5.03 15.28 16 8 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 11 C 0.44 10.34 7.70 -10.98 -0.08 10.25 16 12 O -0.58 -15.87 15.38 5.55 0.09 -15.78 16 13 C 0.12 2.12 3.98 -5.19 -0.02 2.10 16 14 N -0.70 -12.92 5.70 -61.60 -0.35 -13.27 16 15 C 0.41 6.88 7.65 -155.02 -1.19 5.70 16 16 C -0.25 -3.46 9.33 -39.23 -0.37 -3.83 16 17 C -0.03 -0.38 10.17 -39.32 -0.40 -0.78 16 18 C -0.25 -2.83 10.10 -39.43 -0.40 -3.23 16 19 C 0.15 1.93 11.17 -17.57 -0.20 1.73 16 20 N -0.55 -9.07 10.39 -12.44 -0.13 -9.20 16 21 H 0.06 1.20 7.83 -51.93 -0.41 0.79 16 22 H 0.08 1.75 6.80 -51.93 -0.35 1.40 16 23 H 0.03 0.46 6.61 -51.93 -0.34 0.12 16 24 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 25 H 0.08 1.24 7.19 -51.93 -0.37 0.87 16 26 H 0.08 1.35 7.89 -51.93 -0.41 0.94 16 27 H 0.42 8.39 7.56 -40.82 -0.31 8.08 16 28 H 0.13 1.65 6.71 -52.49 -0.35 1.30 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 269.55 15.07 4.06 4.06 Total: -1.00 -30.77 269.55 -6.84 -37.61 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -3.34 Total: 7.82 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -2.37 Total: 6.87 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.25 Total: -55.86 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.09 Total: -15.78 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.77 -6.84 -37.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900450708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.993 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds