Wall clock time and date at job start Sun Mar 29 2020 22:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37096 * 119.99916 * 2 1 4 4 H 1.08002 * 119.99912 * 204.38932 * 3 2 1 5 5 C 1.38948 * 120.00210 * 24.38858 * 3 2 1 6 6 N 1.31414 * 119.99927 * 12.64888 * 5 3 2 7 7 Si 1.86805 * 120.00011 * 192.64152 * 5 3 2 8 8 H 1.48498 * 109.47021 * 90.00685 * 7 5 3 9 9 H 1.48505 * 109.46888 * 210.00345 * 7 5 3 10 10 H 1.48496 * 109.46991 * 329.99955 * 7 5 3 11 11 C 1.34777 * 120.00052 * 179.97438 * 2 1 3 12 12 O 1.21288 * 119.99962 * 179.97438 * 11 2 1 13 13 C 1.50705 * 119.99833 * 0.02562 * 11 2 1 14 14 N 1.46499 * 109.46866 * 179.97438 * 13 11 2 15 15 C 1.39007 * 119.99529 * 180.02562 * 14 13 11 16 16 C 1.39133 * 119.70894 * 359.97438 * 15 14 13 17 17 C 1.38302 * 119.09636 * 180.02562 * 16 15 14 18 18 C 1.38878 * 118.50433 * 0.02562 * 17 16 15 19 19 C 1.38014 * 119.33301 * 0.27987 * 18 17 16 20 20 N 1.31974 * 120.85458 * 359.44413 * 19 18 17 21 21 H 1.09001 * 109.47167 * 265.86641 * 1 2 3 22 22 H 1.09003 * 109.46834 * 25.86775 * 1 2 3 23 23 H 1.08997 * 109.47461 * 145.86553 * 1 2 3 24 24 H 0.96993 * 119.99918 * 179.97438 * 6 5 3 25 25 H 1.09002 * 109.46999 * 59.99908 * 13 11 2 26 26 H 1.08997 * 109.47043 * 299.99946 * 13 11 2 27 27 H 0.96992 * 120.00482 * 0.02562 * 14 13 11 28 28 H 1.07998 * 120.45003 * 0.02681 * 16 15 14 29 29 H 1.07999 * 120.74449 * 180.02562 * 17 16 15 30 30 H 1.08004 * 120.33033 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.57922 * 179.70232 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2290 -0.3862 5 6 1.5487 2.3369 0.4969 6 7 0.4345 2.2492 1.1881 7 14 2.3237 4.0073 0.1825 8 1 1.7869 4.5720 -1.0817 9 1 2.0034 4.9214 1.3082 10 1 3.7968 3.8564 0.0712 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3853 -2.4723 0.0005 14 7 2.3374 -3.5858 0.0005 15 6 1.8739 -4.8964 0.0000 16 6 0.5047 -5.1436 0.0000 17 6 0.0576 -6.4523 0.0000 18 6 0.9983 -7.4740 0.0005 19 6 2.3414 -7.1565 0.0069 20 7 2.7395 -5.8983 0.0015 21 1 -0.3633 -0.0741 1.0250 22 1 -0.3633 0.9247 -0.4484 23 1 -0.3634 -0.8506 -0.5766 24 1 0.0147 3.0516 1.5352 25 1 0.7590 -2.5302 -0.8897 26 1 0.7584 -2.5298 0.8903 27 1 3.2910 -3.4086 0.0009 28 1 -0.1993 -4.3246 0.0000 29 1 -0.9992 -6.6747 -0.0004 30 1 0.6818 -8.5067 0.0010 31 1 3.0763 -7.9480 0.0123 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900450708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:12 Heat of formation + Delta-G solvation = -3.634538 kcal Electronic energy + Delta-G solvation = -15869.156191 eV Core-core repulsion = 13150.285852 eV Total energy + Delta-G solvation = -2718.870339 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.13891 -40.34757 -37.04930 -36.16798 -33.75422 -33.24302 -31.03042 -28.78866 -27.69649 -25.99405 -24.34674 -23.11165 -20.90819 -19.12865 -18.80343 -17.67787 -17.43730 -16.71329 -16.48026 -16.32053 -15.98570 -15.27153 -15.15415 -14.94342 -14.19502 -13.90637 -13.77999 -13.44392 -13.26577 -13.15357 -12.65631 -12.60560 -12.37997 -12.15353 -11.22454 -11.03629 -10.63912 -10.53919 -10.30734 -9.74096 -8.63842 -8.39214 -6.05021 0.45884 0.62353 1.35539 1.40974 1.52484 1.89621 2.05328 2.31572 3.02433 3.03518 3.08242 3.80320 3.87853 4.08372 4.23589 4.33879 4.39251 4.46690 4.59144 4.65595 4.96235 5.01380 5.21297 5.35710 5.41452 5.47542 5.72486 5.98371 6.11962 6.41341 6.61022 7.09092 7.29612 7.38425 7.90218 8.63653 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.064531 B = 0.004939 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.798637 B = 5668.010753 C = 6031.332085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.452 5.452 3 C -0.348 4.348 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.891 5.891 7 Si 0.990 3.010 8 H -0.263 1.263 9 H -0.273 1.273 10 H -0.278 1.278 11 C 0.426 3.574 12 O -0.630 6.630 13 C 0.137 3.863 14 N -0.721 5.721 15 C 0.382 3.618 16 C -0.254 4.254 17 C -0.031 4.031 18 C -0.236 4.236 19 C 0.131 3.869 20 N -0.585 5.585 21 H 0.049 0.951 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.276 0.724 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.401 0.599 28 H 0.144 0.856 29 H 0.166 0.834 30 H 0.163 0.837 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 -13.656 -2.261 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.170 5.170 3 C -0.476 4.476 4 H 0.088 0.912 5 C -0.200 4.200 6 N -0.529 5.529 7 Si 0.813 3.187 8 H -0.188 1.188 9 H -0.197 1.197 10 H -0.203 1.203 11 C 0.215 3.785 12 O -0.518 6.518 13 C 0.009 3.991 14 N -0.355 5.355 15 C 0.147 3.853 16 C -0.280 4.280 17 C -0.057 4.057 18 C -0.258 4.258 19 C -0.026 4.026 20 N -0.304 5.304 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.237 0.763 28 H 0.161 0.839 29 H 0.183 0.817 30 H 0.180 0.820 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.884 -13.126 -2.164 14.546 hybrid contribution 0.090 1.050 0.071 1.056 sum -5.794 -12.076 -2.093 13.557 Atomic orbital electron populations 1.21579 0.78786 1.01444 1.01153 1.43768 1.07060 1.04278 1.61920 1.19612 1.00568 0.85944 1.41520 0.91151 1.26076 0.96960 1.02898 0.94054 1.70040 1.19482 1.31004 1.32388 0.84989 0.78230 0.76947 0.78512 1.18800 1.19749 1.20310 1.20800 0.88034 0.86366 0.83292 1.90481 1.16035 1.87494 1.57787 1.20924 0.91158 0.83016 1.04001 1.44374 1.09679 1.01334 1.80106 1.18634 0.90208 0.84955 0.91508 1.21685 0.93605 0.99971 1.12689 1.21753 1.01721 0.90940 0.91241 1.22165 0.93460 1.01757 1.08460 1.22927 0.96343 0.91310 0.91999 1.67104 1.39899 1.01191 1.22186 0.93244 0.92036 0.90780 0.91455 0.87804 0.88418 0.76282 0.83862 0.81688 0.81956 0.80661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.66 8.44 127.77 1.08 5.74 16 2 N -0.45 -22.80 3.01 -658.89 -1.98 -24.78 16 3 C -0.35 -19.61 9.24 84.04 0.78 -18.84 16 4 H 0.07 4.27 7.45 -2.91 -0.02 4.25 16 5 C 0.00 0.15 5.04 84.93 0.43 0.57 16 6 N -0.89 -45.98 10.83 21.66 0.23 -45.75 16 7 Si 0.99 41.82 29.57 68.60 2.03 43.85 16 8 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 9 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 11 C 0.43 20.66 7.70 87.66 0.67 21.34 16 12 O -0.63 -35.86 15.38 -3.06 -0.05 -35.91 16 13 C 0.14 4.88 3.98 85.63 0.34 5.22 16 14 N -0.72 -26.86 5.70 -348.79 -1.99 -28.85 16 15 C 0.38 12.53 7.65 133.06 1.02 13.54 16 16 C -0.25 -6.51 9.33 22.50 0.21 -6.30 16 17 C -0.03 -0.60 10.17 22.44 0.23 -0.37 16 18 C -0.24 -4.38 10.10 22.37 0.23 -4.15 16 19 C 0.13 3.11 11.17 84.62 0.95 4.05 16 20 N -0.58 -19.04 10.39 -193.26 -2.01 -21.04 16 21 H 0.05 2.08 7.83 -2.39 -0.02 2.06 16 22 H 0.06 2.72 6.80 -2.39 -0.02 2.70 16 23 H 0.07 2.31 6.61 -2.39 -0.02 2.30 16 24 H 0.28 13.29 8.31 -92.71 -0.77 12.52 16 25 H 0.10 3.11 7.19 -2.39 -0.02 3.09 16 26 H 0.10 3.12 7.89 -2.39 -0.02 3.10 16 27 H 0.40 16.99 7.56 -92.71 -0.70 16.29 16 28 H 0.14 3.17 6.71 -2.91 -0.02 3.15 16 29 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -69.63 269.55 2.61 -67.02 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.45 Total: 24.64 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: 5.93 Total: 20.82 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -5.75 Total: -120.42 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.05 Total: -35.91 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -69.63 2.61 -67.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900450708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.382 kcal (2) G-P(sol) polarization free energy of solvation -69.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds