Wall clock time and date at job start Sun Mar 29 2020 22:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38866 * 110.99532 * 236.04625 * 2 1 3 5 5 C 1.39538 * 120.56714 * 59.72962 * 4 2 1 6 6 C 1.38249 * 118.43321 * 179.75715 * 5 4 2 7 7 C 1.38820 * 119.48835 * 0.51063 * 6 5 4 8 8 N 1.31360 * 121.12650 * 359.72814 * 7 6 5 9 9 C 1.32936 * 121.70543 * 0.02562 * 8 7 6 10 10 C 1.47583 * 119.80977 * 180.02562 * 9 8 7 11 11 O 1.21623 * 119.99618 * 179.97438 * 10 9 8 12 12 N 1.34768 * 120.00012 * 359.97438 * 10 9 8 13 13 C 1.36828 * 119.99980 * 179.97438 * 12 10 9 14 14 H 1.07996 * 119.99764 * 359.97438 * 13 12 10 15 15 C 1.39071 * 119.99943 * 180.02562 * 13 12 10 16 16 N 1.31352 * 120.00085 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99868 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47423 * 89.99704 * 17 15 13 19 19 H 1.48499 * 109.46969 * 209.99789 * 17 15 13 20 20 H 1.48505 * 109.46994 * 329.99175 * 17 15 13 21 21 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 22 22 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 23 23 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 24 24 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 25 25 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 26 26 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 27 27 H 1.08002 * 120.78242 * 359.97438 * 5 4 2 28 28 H 1.08000 * 120.25925 * 180.26256 * 6 5 4 29 29 H 1.07994 * 119.43802 * 179.74592 * 7 6 5 30 30 H 0.97003 * 120.00120 * 0.02562 * 12 10 9 31 31 H 0.97000 * 119.99894 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9666 -0.7241 -1.0754 5 6 1.6554 -0.3546 -2.3845 6 6 2.1787 -1.1036 -3.4220 7 6 2.9829 -2.1986 -3.1364 8 7 3.2598 -2.5327 -1.8965 9 6 2.7854 -1.8423 -0.8643 10 6 3.1237 -2.2546 0.5118 11 8 2.6919 -1.6252 1.4587 12 7 3.9111 -3.3286 0.7191 13 6 4.2251 -3.7105 1.9949 14 1 3.8424 -3.1511 2.8357 15 6 5.0381 -4.8184 2.2089 16 7 5.5040 -5.4984 1.1862 17 14 5.4662 -5.3403 3.9507 18 1 4.4484 -6.3026 4.4435 19 1 6.8033 -5.9863 3.9592 20 1 5.4876 -4.1466 4.8339 21 1 -0.3634 -1.0252 0.0708 22 1 -0.3633 0.4513 -0.9233 23 1 -0.3633 0.5740 0.8525 24 1 1.5899 1.9163 0.8525 25 1 3.0829 1.3431 0.0709 26 1 1.7045 1.8723 -0.9233 27 1 1.0235 0.4985 -2.5826 28 1 1.9604 -0.8414 -4.4466 29 1 3.3879 -2.7856 -3.9473 30 1 4.2558 -3.8303 -0.0361 31 1 6.0707 -6.2714 1.3355 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900463894.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:33 Heat of formation + Delta-G solvation = 23.264250 kcal Electronic energy + Delta-G solvation = -16405.447451 eV Core-core repulsion = 13687.743531 eV Total energy + Delta-G solvation = -2717.703920 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.21083 -37.44062 -36.86669 -33.82196 -31.92950 -30.97259 -29.98957 -27.34394 -25.52994 -24.53516 -23.44722 -21.11970 -19.72607 -17.93137 -16.85507 -16.45453 -15.93858 -14.90696 -14.77512 -14.33906 -13.89195 -13.59462 -13.57760 -13.31030 -12.60752 -12.52555 -12.14638 -12.11771 -11.64062 -11.51091 -11.45521 -11.07752 -10.37281 -10.22957 -9.57477 -9.42901 -9.29186 -8.52306 -8.46028 -7.90030 -7.68611 -6.45310 -3.73938 1.18190 1.49714 3.19735 3.26786 3.33166 3.71996 4.11761 4.16690 4.61420 4.71727 4.93172 5.03232 5.22131 5.41004 5.41989 5.44417 5.63179 5.68436 5.72076 5.73525 6.07364 6.09889 6.23929 6.27682 6.59801 6.84956 7.24987 7.51305 7.66701 8.06757 8.32556 8.70111 9.19777 9.62979 10.22079 10.71091 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.032279 B = 0.007370 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.216936 B = 3798.353402 C = 4489.867161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.474 5.474 3 C 0.038 3.962 4 C 0.075 3.925 5 C -0.117 4.117 6 C -0.176 4.176 7 C 0.096 3.904 8 N -0.463 5.463 9 C 0.134 3.866 10 C 0.470 3.530 11 O -0.559 6.559 12 N -0.532 5.532 13 C -0.287 4.287 14 H 0.108 0.892 15 C 0.021 3.979 16 N -0.882 5.882 17 Si 0.934 3.066 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.267 1.267 21 H 0.067 0.933 22 H 0.019 0.981 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.019 0.981 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.155 0.845 30 H 0.402 0.598 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.274 8.434 -8.116 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.194 5.194 3 C -0.108 4.108 4 C -0.024 4.024 5 C -0.145 4.145 6 C -0.197 4.197 7 C -0.064 4.064 8 N -0.175 5.175 9 C -0.005 4.005 10 C 0.256 3.744 11 O -0.442 6.442 12 N -0.167 5.167 13 C -0.418 4.418 14 H 0.126 0.874 15 C -0.183 4.183 16 N -0.521 5.521 17 Si 0.760 3.240 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.192 1.192 21 H 0.086 0.914 22 H 0.037 0.963 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.037 0.963 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.172 0.828 30 H 0.238 0.762 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.738 7.730 -6.784 11.777 hybrid contribution -0.377 0.503 -0.802 1.018 sum -6.114 8.233 -7.586 12.756 Atomic orbital electron populations 1.22388 0.86400 1.02528 0.99757 1.59068 1.07301 1.13001 1.39987 1.22364 1.01324 0.87473 0.99688 1.19564 0.98065 0.95806 0.88946 1.22055 0.99438 0.99711 0.93292 1.22006 1.00526 0.97630 0.99555 1.22776 0.94980 0.94641 0.94036 1.67875 1.20934 1.29244 0.99413 1.22010 0.93173 0.90919 0.94436 1.17156 0.86228 0.84947 0.86085 1.90682 1.57036 1.55743 1.40695 1.41942 1.41098 1.24377 1.09262 1.19884 1.26697 1.10173 0.85034 0.87428 1.25423 0.96734 0.96279 0.99814 1.69639 1.32956 1.18776 1.30753 0.85797 0.77720 0.78976 0.81479 1.20223 1.20792 1.19171 0.91376 0.96254 0.90981 0.90992 0.91325 0.96303 0.85525 0.85347 0.82813 0.76246 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 9.34 60.07 0.56 1.10 16 2 N -0.47 -8.65 2.91 -186.49 -0.54 -9.20 16 3 C 0.04 0.57 9.39 60.06 0.56 1.14 16 4 C 0.07 1.40 4.72 -83.46 -0.39 1.01 16 5 C -0.12 -1.72 8.68 -39.09 -0.34 -2.06 16 6 C -0.18 -2.34 10.10 -39.36 -0.40 -2.74 16 7 C 0.10 1.49 11.17 -17.54 -0.20 1.29 16 8 N -0.46 -9.39 9.53 -9.68 -0.09 -9.49 16 9 C 0.13 2.95 6.76 -82.84 -0.56 2.39 16 10 C 0.47 12.39 7.74 -12.45 -0.10 12.29 16 11 O -0.56 -15.82 14.58 5.26 0.08 -15.74 16 12 N -0.53 -14.69 5.27 -11.92 -0.06 -14.76 16 13 C -0.29 -8.24 9.68 -15.01 -0.15 -8.39 16 14 H 0.11 3.17 7.15 -52.49 -0.38 2.79 16 15 C 0.02 0.58 5.50 -17.45 -0.10 0.49 16 16 N -0.88 -24.53 13.05 55.50 0.72 -23.80 16 17 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.02 0.24 7.16 -51.93 -0.37 -0.14 16 23 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 24 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.02 0.23 7.41 -51.93 -0.38 -0.15 16 27 H 0.13 1.51 7.16 -52.49 -0.38 1.13 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.40 11.05 7.22 -40.82 -0.29 10.76 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 272.34 15.07 4.10 4.10 Total: -1.00 -32.21 272.34 -5.39 -37.60 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.47 Total: 8.72 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.10 Total: 6.52 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.03 Total: -57.24 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.08 Total: -15.74 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.21 -5.39 -37.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900463894.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.860 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds