Wall clock time and date at job start Sun Mar 29 2020 22:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38866 * 110.99532 * 236.04625 * 2 1 3 5 5 C 1.39538 * 120.56714 * 59.72962 * 4 2 1 6 6 C 1.38249 * 118.43321 * 179.75715 * 5 4 2 7 7 C 1.38820 * 119.48835 * 0.51063 * 6 5 4 8 8 N 1.31360 * 121.12650 * 359.72814 * 7 6 5 9 9 C 1.32936 * 121.70543 * 0.02562 * 8 7 6 10 10 C 1.47583 * 119.80977 * 180.02562 * 9 8 7 11 11 O 1.21623 * 119.99618 * 179.97438 * 10 9 8 12 12 N 1.34768 * 120.00012 * 359.97438 * 10 9 8 13 13 C 1.36828 * 119.99980 * 179.97438 * 12 10 9 14 14 H 1.07996 * 119.99764 * 359.97438 * 13 12 10 15 15 C 1.39071 * 119.99943 * 180.02562 * 13 12 10 16 16 N 1.31352 * 120.00085 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99868 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47423 * 89.99704 * 17 15 13 19 19 H 1.48499 * 109.46969 * 209.99789 * 17 15 13 20 20 H 1.48505 * 109.46994 * 329.99175 * 17 15 13 21 21 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 22 22 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 23 23 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 24 24 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 25 25 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 26 26 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 27 27 H 1.08002 * 120.78242 * 359.97438 * 5 4 2 28 28 H 1.08000 * 120.25925 * 180.26256 * 6 5 4 29 29 H 1.07994 * 119.43802 * 179.74592 * 7 6 5 30 30 H 0.97003 * 120.00120 * 0.02562 * 12 10 9 31 31 H 0.97000 * 119.99894 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9666 -0.7241 -1.0754 5 6 1.6554 -0.3546 -2.3845 6 6 2.1787 -1.1036 -3.4220 7 6 2.9829 -2.1986 -3.1364 8 7 3.2598 -2.5327 -1.8965 9 6 2.7854 -1.8423 -0.8643 10 6 3.1237 -2.2546 0.5118 11 8 2.6919 -1.6252 1.4587 12 7 3.9111 -3.3286 0.7191 13 6 4.2251 -3.7105 1.9949 14 1 3.8424 -3.1511 2.8357 15 6 5.0381 -4.8184 2.2089 16 7 5.5040 -5.4984 1.1862 17 14 5.4662 -5.3403 3.9507 18 1 4.4484 -6.3026 4.4435 19 1 6.8033 -5.9863 3.9592 20 1 5.4876 -4.1466 4.8339 21 1 -0.3634 -1.0252 0.0708 22 1 -0.3633 0.4513 -0.9233 23 1 -0.3633 0.5740 0.8525 24 1 1.5899 1.9163 0.8525 25 1 3.0829 1.3431 0.0709 26 1 1.7045 1.8723 -0.9233 27 1 1.0235 0.4985 -2.5826 28 1 1.9604 -0.8414 -4.4466 29 1 3.3879 -2.7856 -3.9473 30 1 4.2558 -3.8303 -0.0361 31 1 6.0707 -6.2714 1.3355 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900463894.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:32 Heat of formation + Delta-G solvation = -0.666561 kcal Electronic energy + Delta-G solvation = -16406.485169 eV Core-core repulsion = 13687.743531 eV Total energy + Delta-G solvation = -2718.741638 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62309 -39.38790 -38.17210 -35.88558 -33.50458 -32.78125 -31.36691 -28.50045 -27.41873 -25.81675 -25.04396 -22.41681 -21.47877 -19.99202 -18.50311 -17.80422 -17.27934 -16.68370 -16.25525 -15.84388 -15.67122 -15.24292 -14.91641 -14.68996 -14.15922 -14.13245 -13.51617 -13.44368 -13.21847 -12.91229 -12.83260 -12.67067 -12.42141 -12.10139 -11.49481 -10.78153 -10.71548 -10.35526 -10.00379 -9.84573 -9.05212 -8.48535 -5.92476 -0.18867 0.25680 1.40888 1.41439 1.55948 2.11988 2.29373 2.88079 2.88805 3.11071 3.38917 3.62847 3.91804 4.03558 4.18416 4.25966 4.35106 4.49929 4.58327 4.59659 4.74722 4.94153 4.94338 5.07326 5.18229 5.38249 5.56785 5.97788 6.09335 6.40690 6.59348 6.97184 7.12968 7.58884 8.16773 8.69093 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.032279 B = 0.007370 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.216936 B = 3798.353402 C = 4489.867161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.519 5.519 3 C 0.042 3.958 4 C 0.079 3.921 5 C -0.113 4.113 6 C -0.135 4.135 7 C 0.084 3.916 8 N -0.493 5.493 9 C 0.081 3.919 10 C 0.472 3.528 11 O -0.588 6.588 12 N -0.552 5.552 13 C -0.333 4.333 14 H 0.086 0.914 15 C -0.016 4.016 16 N -0.914 5.914 17 Si 1.003 2.997 18 H -0.268 1.268 19 H -0.268 1.268 20 H -0.269 1.269 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.168 0.832 28 H 0.185 0.815 29 H 0.190 0.810 30 H 0.399 0.601 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.469 9.948 -10.645 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.240 5.240 3 C -0.104 4.104 4 C -0.020 4.020 5 C -0.140 4.140 6 C -0.155 4.155 7 C -0.077 4.077 8 N -0.205 5.205 9 C -0.056 4.056 10 C 0.259 3.741 11 O -0.473 6.473 12 N -0.188 5.188 13 C -0.462 4.462 14 H 0.104 0.896 15 C -0.217 4.217 16 N -0.554 5.554 17 Si 0.825 3.175 18 H -0.193 1.193 19 H -0.192 1.192 20 H -0.194 1.194 21 H 0.064 0.936 22 H 0.072 0.928 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.185 0.815 28 H 0.202 0.798 29 H 0.207 0.793 30 H 0.233 0.767 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.946 9.260 -9.327 14.866 hybrid contribution -0.159 0.232 -0.303 0.413 sum -7.105 9.491 -9.630 15.275 Atomic orbital electron populations 1.22381 0.84500 1.01737 1.02045 1.58901 1.09264 1.14697 1.41184 1.22345 0.99750 0.86342 1.01965 1.19713 0.96725 0.94465 0.91079 1.22451 0.99413 1.00822 0.91343 1.22628 0.96345 0.94649 1.01876 1.23505 0.95292 0.95994 0.92902 1.67698 1.21756 1.30124 1.00934 1.21450 0.97382 0.94070 0.92677 1.17995 0.84340 0.83616 0.88186 1.90616 1.57539 1.56326 1.42771 1.41945 1.42707 1.25456 1.08696 1.19841 1.29336 1.11865 0.85197 0.89637 1.26281 0.95806 0.95497 1.04082 1.69714 1.33749 1.19360 1.32597 0.84803 0.78064 0.78430 0.76231 1.19318 1.19230 1.19359 0.93585 0.92781 0.89877 0.89865 0.93811 0.92864 0.81459 0.79754 0.79309 0.76687 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 9.34 127.69 1.19 2.29 16 2 N -0.52 -18.50 2.91 -743.94 -2.17 -20.66 16 3 C 0.04 1.19 9.39 127.69 1.20 2.38 16 4 C 0.08 2.83 4.72 38.82 0.18 3.02 16 5 C -0.11 -2.75 8.68 22.59 0.20 -2.56 16 6 C -0.13 -2.80 10.10 22.41 0.23 -2.57 16 7 C 0.08 2.32 11.17 84.90 0.95 3.27 16 8 N -0.49 -19.94 9.53 -184.54 -1.76 -21.70 16 9 C 0.08 3.66 6.76 41.92 0.28 3.94 16 10 C 0.47 26.34 7.74 86.71 0.67 27.01 16 11 O -0.59 -35.31 14.58 -4.10 -0.06 -35.37 16 12 N -0.55 -32.59 5.27 -309.87 -1.63 -34.23 16 13 C -0.33 -20.35 9.68 84.11 0.81 -19.54 16 14 H 0.09 5.44 7.15 -2.91 -0.02 5.42 16 15 C -0.02 -0.92 5.50 84.96 0.47 -0.45 16 16 N -0.91 -52.76 13.05 21.68 0.28 -52.48 16 17 Si 1.00 44.62 29.55 68.60 2.03 46.65 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.05 1.10 7.16 -2.39 -0.02 1.08 16 23 H 0.08 2.06 8.12 -2.38 -0.02 2.04 16 24 H 0.08 2.10 8.12 -2.38 -0.02 2.08 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.11 7.41 -2.39 -0.02 1.10 16 27 H 0.17 2.79 7.16 -2.91 -0.02 2.76 16 28 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 30 H 0.40 23.40 7.22 -92.71 -0.67 22.73 16 31 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -76.98 272.34 3.36 -73.62 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.48 Total: 27.36 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 6.18 Total: 16.80 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -5.28 Total: -129.06 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.06 Total: -35.37 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -76.98 3.36 -73.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900463894.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.954 kcal (2) G-P(sol) polarization free energy of solvation -76.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds