Wall clock time and date at job start Sun Mar 29 2020 22:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36802 * 120.00275 * 2 1 4 4 H 1.07993 * 120.00000 * 212.85981 * 3 2 1 5 5 C 1.39047 * 119.99843 * 32.86605 * 3 2 1 6 6 N 1.31374 * 120.00039 * 355.70953 * 5 3 2 7 7 Si 1.86798 * 120.00116 * 175.70662 * 5 3 2 8 8 H 1.48506 * 109.47015 * 60.00198 * 7 5 3 9 9 H 1.48498 * 109.47245 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47322 * 300.00202 * 7 5 3 11 11 C 1.34776 * 120.00061 * 180.02562 * 2 1 3 12 12 O 1.21808 * 120.00722 * 179.97438 * 11 2 1 13 13 C 1.41570 * 119.99740 * 0.27546 * 11 2 1 14 14 C 1.35326 * 120.00048 * 188.79935 * 13 11 2 15 15 C 1.46732 * 119.99942 * 30.02751 * 14 13 11 16 16 C 1.36803 * 126.24691 * 186.93798 * 15 14 13 17 17 N 1.36082 * 106.70984 * 179.84550 * 16 15 14 18 18 C 1.46502 * 126.17446 * 180.12829 * 17 16 15 19 19 C 1.35849 * 107.64515 * 0.41581 * 17 16 15 20 20 N 1.30181 * 109.12016 * 359.73594 * 19 17 16 21 21 H 1.08999 * 109.47064 * 273.28536 * 1 2 3 22 22 H 1.09004 * 109.47110 * 33.28181 * 1 2 3 23 23 H 1.08998 * 109.47236 * 153.28279 * 1 2 3 24 24 H 0.97004 * 120.00003 * 180.02562 * 6 5 3 25 25 H 1.08001 * 120.00258 * 8.79096 * 13 11 2 26 26 H 1.07999 * 120.00078 * 210.03034 * 14 13 11 27 27 H 1.07994 * 126.64583 * 359.96127 * 16 15 14 28 28 H 1.09000 * 109.46953 * 270.31170 * 18 17 16 29 29 H 1.09005 * 109.47007 * 30.31098 * 18 17 16 30 30 H 1.08998 * 109.46700 * 150.30700 * 18 17 16 31 31 H 1.08000 * 125.43850 * 179.70313 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1847 0.0000 4 1 3.0994 1.2595 -0.5075 5 6 1.6208 2.2925 0.6535 6 7 0.4273 2.2263 1.1985 7 14 2.6081 3.8749 0.7565 8 1 2.8945 4.3697 -0.6141 9 1 1.8280 4.8977 1.4985 10 1 3.8864 3.6155 1.4663 11 6 2.1389 -1.1672 -0.0005 12 8 3.3570 -1.1673 -0.0010 13 6 1.4310 -2.3932 -0.0070 14 6 2.0949 -3.5588 0.1718 15 6 3.3148 -3.5908 0.9865 16 6 4.1552 -4.6589 1.1430 17 7 5.1540 -4.2525 1.9731 18 6 6.2880 -5.0635 2.4231 19 6 4.9062 -2.9611 2.3141 20 7 3.8127 -2.5675 1.7276 21 1 -0.3633 0.0589 1.0260 22 1 -0.3633 0.8591 -0.5640 23 1 -0.3633 -0.9179 -0.4620 24 1 0.0586 2.9993 1.6541 25 1 0.3611 -2.3983 -0.1544 26 1 1.7269 -4.4654 -0.2853 27 1 4.0478 -5.6349 0.6933 28 1 6.0207 -5.5830 3.3434 29 1 6.5406 -5.7935 1.6540 30 1 7.1465 -4.4175 2.6068 31 1 5.5184 -2.3575 2.9678 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931240113.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:44 Heat of formation + Delta-G solvation = 89.840040 kcal Electronic energy + Delta-G solvation = -16292.780344 eV Core-core repulsion = 13577.963367 eV Total energy + Delta-G solvation = -2714.816977 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.30808 -38.21574 -34.70743 -33.63423 -31.99392 -31.26091 -28.78685 -26.70036 -25.98759 -24.49576 -22.46632 -20.63535 -19.99075 -17.66986 -16.80245 -16.36764 -15.81623 -15.28379 -14.48393 -14.05088 -14.00175 -13.57688 -13.25217 -12.75187 -12.66896 -12.53695 -12.26019 -11.73418 -11.22017 -11.15818 -10.85166 -10.67999 -10.27837 -10.13504 -9.47291 -9.16172 -8.78402 -8.60114 -7.91857 -7.24899 -7.12682 -6.10611 -3.65155 1.62158 2.74439 3.14232 3.33147 3.35474 3.41803 4.15701 4.32957 4.75247 4.86018 5.09235 5.11660 5.18632 5.31029 5.36219 5.46196 5.69387 5.79205 6.17647 6.27580 6.62420 6.65831 6.96469 7.09319 7.14217 7.40686 7.48594 7.66820 7.72883 8.45641 8.77783 8.82335 9.50595 9.71289 10.41364 10.93074 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.033394 B = 0.006986 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.260726 B = 4006.924680 C = 4622.551422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.449 5.449 3 C -0.287 4.287 4 H 0.090 0.910 5 C 0.030 3.970 6 N -0.885 5.885 7 Si 0.924 3.076 8 H -0.276 1.276 9 H -0.286 1.286 10 H -0.274 1.274 11 C 0.481 3.519 12 O -0.558 6.558 13 C -0.170 4.170 14 C -0.049 4.049 15 C 0.040 3.960 16 C -0.055 4.055 17 N -0.475 5.475 18 C 0.078 3.922 19 C 0.163 3.837 20 N -0.405 5.405 21 H 0.056 0.944 22 H 0.061 0.939 23 H 0.025 0.975 24 H 0.265 0.735 25 H 0.121 0.879 26 H 0.126 0.874 27 H 0.169 0.831 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.934 -13.380 1.728 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.169 5.169 3 C -0.416 4.416 4 H 0.108 0.892 5 C -0.172 4.172 6 N -0.525 5.525 7 Si 0.751 3.249 8 H -0.201 1.201 9 H -0.211 1.211 10 H -0.199 1.199 11 C 0.272 3.728 12 O -0.441 6.441 13 C -0.193 4.193 14 C -0.072 4.072 15 C -0.088 4.088 16 C -0.188 4.188 17 N -0.160 5.160 18 C -0.065 4.065 19 C -0.120 4.120 20 N -0.120 5.120 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.139 0.861 26 H 0.143 0.857 27 H 0.187 0.813 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.163 -12.462 1.945 13.628 hybrid contribution 0.680 0.079 0.095 0.691 sum 5.843 -12.383 2.040 13.843 Atomic orbital electron populations 1.21559 0.81960 0.97987 1.01577 1.43535 1.05101 1.05106 1.63204 1.19432 1.04575 0.86876 1.30671 0.89232 1.25450 0.96252 0.99916 0.95615 1.69930 1.15429 1.30915 1.36251 0.86044 0.79719 0.80764 0.78338 1.20115 1.21119 1.19924 1.16744 0.88001 0.83879 0.84147 1.90672 1.13129 1.86953 1.53305 1.22426 0.99129 0.94546 1.03218 1.21134 0.92480 0.97298 0.96283 1.19560 0.97814 0.89436 1.01963 1.22628 0.92727 1.01243 1.02237 1.45401 1.20372 1.12426 1.37828 1.21905 0.88009 0.95938 1.00677 1.25272 0.98990 0.83222 1.04477 1.71123 1.07509 1.26026 1.07380 0.92501 0.92040 0.95671 0.92470 0.86144 0.85662 0.81338 0.91198 0.90315 0.89873 0.78684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.76 8.50 59.85 0.51 3.27 16 2 N -0.45 -12.61 3.00 -125.48 -0.38 -12.99 16 3 C -0.29 -8.58 9.06 -15.03 -0.14 -8.72 16 4 H 0.09 2.78 7.59 -52.49 -0.40 2.38 16 5 C 0.03 0.85 5.37 -17.45 -0.09 0.76 16 6 N -0.89 -25.16 10.57 55.50 0.59 -24.57 16 7 Si 0.92 22.19 29.56 -169.99 -5.02 17.17 16 8 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.48 13.03 6.85 -14.99 -0.10 12.93 16 12 O -0.56 -16.70 12.91 5.09 0.07 -16.64 16 13 C -0.17 -3.70 9.06 -39.35 -0.36 -4.05 16 14 C -0.05 -0.94 9.99 -37.19 -0.37 -1.31 16 15 C 0.04 0.80 6.06 -83.20 -0.50 0.30 16 16 C -0.05 -0.86 11.53 -16.19 -0.19 -1.04 16 17 N -0.47 -6.86 3.15 -125.46 -0.39 -7.25 16 18 C 0.08 0.66 11.16 59.85 0.67 1.33 16 19 C 0.16 2.94 12.55 -89.90 -1.13 1.81 16 20 N -0.40 -9.36 8.03 -11.10 -0.09 -9.45 16 21 H 0.06 1.45 7.37 -51.93 -0.38 1.07 16 22 H 0.06 1.54 7.43 -51.93 -0.39 1.16 16 23 H 0.02 0.51 5.81 -51.93 -0.30 0.21 16 24 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.12 2.25 5.96 -52.49 -0.31 1.94 16 26 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 27 H 0.17 1.93 8.06 -52.49 -0.42 1.50 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.20 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 269.73 15.07 4.06 4.06 Total: -1.00 -37.49 269.73 -6.32 -43.81 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -3.45 Total: 0.60 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.70 Total: 5.26 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.27 Total: -54.27 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.07 Total: -16.64 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -37.49 -6.32 -43.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931240113.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.650 kcal (2) G-P(sol) polarization free energy of solvation -37.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds