Wall clock time and date at job start Sun Mar 29 2020 22:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36802 * 120.00275 * 2 1 4 4 H 1.07993 * 120.00000 * 212.85981 * 3 2 1 5 5 C 1.39047 * 119.99843 * 32.86605 * 3 2 1 6 6 N 1.31374 * 120.00039 * 355.70953 * 5 3 2 7 7 Si 1.86798 * 120.00116 * 175.70662 * 5 3 2 8 8 H 1.48506 * 109.47015 * 60.00198 * 7 5 3 9 9 H 1.48498 * 109.47245 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47322 * 300.00202 * 7 5 3 11 11 C 1.34776 * 120.00061 * 180.02562 * 2 1 3 12 12 O 1.21808 * 120.00722 * 179.97438 * 11 2 1 13 13 C 1.41570 * 119.99740 * 0.27546 * 11 2 1 14 14 C 1.35326 * 120.00048 * 188.79935 * 13 11 2 15 15 C 1.46732 * 119.99942 * 30.02751 * 14 13 11 16 16 C 1.36803 * 126.24691 * 186.93798 * 15 14 13 17 17 N 1.36082 * 106.70984 * 179.84550 * 16 15 14 18 18 C 1.46502 * 126.17446 * 180.12829 * 17 16 15 19 19 C 1.35849 * 107.64515 * 0.41581 * 17 16 15 20 20 N 1.30181 * 109.12016 * 359.73594 * 19 17 16 21 21 H 1.08999 * 109.47064 * 273.28536 * 1 2 3 22 22 H 1.09004 * 109.47110 * 33.28181 * 1 2 3 23 23 H 1.08998 * 109.47236 * 153.28279 * 1 2 3 24 24 H 0.97004 * 120.00003 * 180.02562 * 6 5 3 25 25 H 1.08001 * 120.00258 * 8.79096 * 13 11 2 26 26 H 1.07999 * 120.00078 * 210.03034 * 14 13 11 27 27 H 1.07994 * 126.64583 * 359.96127 * 16 15 14 28 28 H 1.09000 * 109.46953 * 270.31170 * 18 17 16 29 29 H 1.09005 * 109.47007 * 30.31098 * 18 17 16 30 30 H 1.08998 * 109.46700 * 150.30700 * 18 17 16 31 31 H 1.08000 * 125.43850 * 179.70313 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1847 0.0000 4 1 3.0994 1.2595 -0.5075 5 6 1.6208 2.2925 0.6535 6 7 0.4273 2.2263 1.1985 7 14 2.6081 3.8749 0.7565 8 1 2.8945 4.3697 -0.6141 9 1 1.8280 4.8977 1.4985 10 1 3.8864 3.6155 1.4663 11 6 2.1389 -1.1672 -0.0005 12 8 3.3570 -1.1673 -0.0010 13 6 1.4310 -2.3932 -0.0070 14 6 2.0949 -3.5588 0.1718 15 6 3.3148 -3.5908 0.9865 16 6 4.1552 -4.6589 1.1430 17 7 5.1540 -4.2525 1.9731 18 6 6.2880 -5.0635 2.4231 19 6 4.9062 -2.9611 2.3141 20 7 3.8127 -2.5675 1.7276 21 1 -0.3633 0.0589 1.0260 22 1 -0.3633 0.8591 -0.5640 23 1 -0.3633 -0.9179 -0.4620 24 1 0.0586 2.9993 1.6541 25 1 0.3611 -2.3983 -0.1544 26 1 1.7269 -4.4654 -0.2853 27 1 4.0478 -5.6349 0.6933 28 1 6.0207 -5.5830 3.3434 29 1 6.5406 -5.7935 1.6540 30 1 7.1465 -4.4175 2.6068 31 1 5.5184 -2.3575 2.9678 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931240113.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:44 Heat of formation + Delta-G solvation = 64.383195 kcal Electronic energy + Delta-G solvation = -16293.884236 eV Core-core repulsion = 13577.963367 eV Total energy + Delta-G solvation = -2715.920869 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.60948 -40.17425 -36.60401 -35.07934 -33.71923 -33.14982 -30.16327 -28.26327 -27.50350 -26.37681 -24.15514 -21.89356 -21.58637 -19.29232 -18.68922 -18.19111 -17.35641 -16.48018 -16.29048 -15.79238 -15.72688 -15.13177 -14.81347 -14.24871 -13.81301 -13.73269 -13.59712 -13.38159 -13.19997 -12.99700 -12.79761 -12.63379 -12.20788 -12.10431 -10.88432 -10.81279 -10.54253 -10.23968 -9.81511 -9.35587 -8.58749 -8.22253 -5.87925 0.14870 1.36979 1.38840 1.45961 1.50722 2.09337 2.33071 2.64164 2.90366 3.36866 3.49424 3.85106 4.01072 4.15585 4.35062 4.46397 4.51652 4.58301 4.75217 4.77176 4.97360 5.11029 5.36354 5.44903 5.46706 5.52084 5.65285 6.03420 6.28632 6.45264 6.73836 7.37765 7.45782 7.68706 8.37239 8.80012 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.033394 B = 0.006986 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.260726 B = 4006.924680 C = 4622.551422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.478 5.478 3 C -0.327 4.327 4 H 0.060 0.940 5 C -0.009 4.009 6 N -0.905 5.905 7 Si 0.987 3.013 8 H -0.266 1.266 9 H -0.268 1.268 10 H -0.282 1.282 11 C 0.481 3.519 12 O -0.598 6.598 13 C -0.235 4.235 14 C 0.006 3.994 15 C -0.037 4.037 16 C -0.006 4.006 17 N -0.464 5.464 18 C 0.069 3.931 19 C 0.146 3.854 20 N -0.479 5.479 21 H 0.037 0.963 22 H 0.044 0.956 23 H 0.066 0.934 24 H 0.269 0.731 25 H 0.147 0.853 26 H 0.184 0.816 27 H 0.223 0.777 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.857 -16.346 1.930 17.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.199 5.199 3 C -0.455 4.455 4 H 0.078 0.922 5 C -0.209 4.209 6 N -0.544 5.544 7 Si 0.811 3.189 8 H -0.191 1.191 9 H -0.192 1.192 10 H -0.208 1.208 11 C 0.274 3.726 12 O -0.484 6.484 13 C -0.257 4.257 14 C -0.016 4.016 15 C -0.164 4.164 16 C -0.143 4.143 17 N -0.147 5.147 18 C -0.072 4.072 19 C -0.137 4.137 20 N -0.195 5.195 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.164 0.836 26 H 0.201 0.799 27 H 0.239 0.761 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.088 -15.454 2.159 16.750 hybrid contribution 0.631 0.641 0.109 0.906 sum 6.719 -14.813 2.269 16.423 Atomic orbital electron populations 1.21394 0.80364 0.99271 1.00420 1.43743 1.06227 1.04969 1.64967 1.19348 1.04564 0.88897 1.32734 0.92196 1.26198 0.97229 1.02661 0.94780 1.70028 1.16118 1.31862 1.36423 0.85106 0.77876 0.77157 0.78748 1.19051 1.19233 1.20809 1.17616 0.87913 0.85197 0.81828 1.90614 1.15096 1.87899 1.54756 1.22241 1.00516 0.92991 1.09977 1.21981 0.90366 0.98273 0.90930 1.20139 1.00647 0.90852 1.04731 1.23372 0.90410 1.01489 0.99044 1.45754 1.21120 1.11657 1.36156 1.22359 0.86310 0.96052 1.02466 1.25540 0.98401 0.85062 1.04733 1.70969 1.10058 1.28983 1.09512 0.94462 0.93711 0.91555 0.92125 0.83598 0.79911 0.76085 0.88951 0.87654 0.88538 0.77026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.51 8.50 127.77 1.09 7.59 16 2 N -0.48 -28.16 3.00 -669.09 -2.01 -30.17 16 3 C -0.33 -20.70 9.06 84.11 0.76 -19.93 16 4 H 0.06 4.01 7.59 -2.91 -0.02 3.99 16 5 C -0.01 -0.50 5.37 84.96 0.46 -0.04 16 6 N -0.90 -53.07 10.57 21.68 0.23 -52.84 16 7 Si 0.99 47.00 29.56 68.60 2.03 49.03 16 8 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 11 C 0.48 27.10 6.85 85.06 0.58 27.69 16 12 O -0.60 -37.57 12.91 -4.69 -0.06 -37.63 16 13 C -0.24 -10.15 9.06 22.42 0.20 -9.95 16 14 C 0.01 0.21 9.99 23.82 0.24 0.45 16 15 C -0.04 -1.45 6.06 40.41 0.24 -1.21 16 16 C -0.01 -0.16 11.53 83.70 0.97 0.80 16 17 N -0.46 -11.79 3.15 -550.84 -1.73 -13.52 16 18 C 0.07 0.83 11.16 127.77 1.43 2.25 16 19 C 0.15 5.17 12.55 180.10 2.26 7.43 16 20 N -0.48 -22.42 8.03 -189.04 -1.52 -23.94 16 21 H 0.04 1.98 7.37 -2.39 -0.02 1.96 16 22 H 0.04 2.34 7.43 -2.38 -0.02 2.32 16 23 H 0.07 2.71 5.81 -2.39 -0.01 2.70 16 24 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.15 5.31 5.96 -2.91 -0.02 5.30 16 26 H 0.18 4.12 8.06 -2.91 -0.02 4.10 16 27 H 0.22 3.43 8.06 -2.91 -0.02 3.41 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.21 6.22 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -89.33 269.73 6.30 -83.04 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.13 Total: 10.94 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 8.22 Total: 15.08 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -5.03 Total: -120.46 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.06 Total: -37.63 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -89.33 6.30 -83.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931240113.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.420 kcal (2) G-P(sol) polarization free energy of solvation -89.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds