Wall clock time and date at job start Sun Mar 29 2020 22:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37094 * 120.00086 * 2 1 4 4 H 1.07994 * 120.00198 * 186.39000 * 3 2 1 5 5 C 1.38960 * 119.99960 * 6.38508 * 3 2 1 6 6 N 1.31406 * 119.99609 * 6.45065 * 5 3 2 7 7 Si 1.86792 * 119.99880 * 186.44988 * 5 3 2 8 8 H 1.48494 * 109.47348 * 90.00222 * 7 5 3 9 9 H 1.48497 * 109.47121 * 209.99994 * 7 5 3 10 10 H 1.48503 * 109.47301 * 330.00055 * 7 5 3 11 11 C 1.34775 * 119.99937 * 179.97438 * 2 1 3 12 12 O 1.21295 * 120.00115 * 184.55087 * 11 2 1 13 13 C 1.50704 * 120.00103 * 4.55833 * 11 2 1 14 14 N 1.46500 * 115.54695 * 65.97018 * 13 11 2 15 15 C 1.34946 * 126.04258 * 20.38871 * 14 13 11 16 16 C 1.35307 * 107.75146 * 179.76800 * 15 14 13 17 17 C 1.39877 * 107.91766 * 0.22708 * 16 15 14 18 18 N 1.30830 * 108.20302 * 0.02562 * 17 16 15 19 19 C 1.52996 * 117.51732 * 211.67331 * 13 11 2 20 20 C 1.52999 * 117.49957 * 280.30464 * 13 11 2 21 21 H 1.08997 * 109.47400 * 174.53766 * 1 2 3 22 22 H 1.09002 * 109.46919 * 294.53370 * 1 2 3 23 23 H 1.08992 * 109.47239 * 54.53383 * 1 2 3 24 24 H 0.97001 * 119.99722 * 180.02562 * 6 5 3 25 25 H 1.08004 * 126.12318 * 0.03391 * 15 14 13 26 26 H 1.08006 * 126.04451 * 180.24853 * 16 15 14 27 27 H 1.08005 * 125.89432 * 179.97438 * 17 16 15 28 28 H 1.08996 * 117.49728 * 214.96861 * 19 13 11 29 29 H 1.08997 * 117.50059 * 359.97438 * 19 13 11 30 30 H 1.09004 * 117.49660 * 359.97370 * 20 13 11 31 31 H 1.08988 * 117.50078 * 144.99659 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2254 1.1902 -0.1041 5 6 1.4622 2.3870 0.1338 6 7 0.1728 2.3799 0.3870 7 14 2.3699 4.0096 -0.0462 8 1 2.3406 4.4381 -1.4677 9 1 1.7116 5.0410 0.7953 10 1 3.7790 3.8397 0.3907 11 6 2.1389 -1.1672 0.0005 12 8 3.3490 -1.1689 0.0839 13 6 1.3889 -2.4703 -0.1026 14 7 0.6923 -2.6996 -1.3708 15 6 0.9571 -2.0880 -2.5441 16 6 0.0996 -2.5793 -3.4683 17 6 -0.7210 -3.5198 -2.8369 18 7 -0.3690 -3.5902 -1.5788 19 6 1.9867 -3.6878 0.6054 20 6 0.7356 -3.0121 1.1704 21 1 -0.3634 -1.0229 -0.0978 22 1 -0.3633 0.4267 0.9349 23 1 -0.3633 0.5962 -0.8369 24 1 -0.3078 3.2173 0.4801 25 1 1.7202 -1.3432 -2.7159 26 1 0.0564 -2.2957 -4.5095 27 1 -1.5096 -4.0890 -3.3067 28 1 1.8615 -4.6595 0.1276 29 1 2.9227 -3.5466 1.1456 30 1 0.8486 -2.4262 2.0826 31 1 -0.2125 -3.5391 1.0643 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931243209.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:25 Heat of formation + Delta-G solvation = 96.490316 kcal Electronic energy + Delta-G solvation = -16935.293296 eV Core-core repulsion = 14220.764697 eV Total energy + Delta-G solvation = -2714.528599 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.92027 -38.82069 -36.09652 -34.77938 -31.74131 -30.80295 -29.40068 -26.64595 -25.14416 -23.24628 -22.21729 -21.18071 -20.26901 -18.68327 -17.38327 -16.92741 -15.52918 -14.99393 -14.48639 -14.45994 -14.07492 -13.72784 -13.58561 -12.99597 -12.46136 -12.32381 -11.88268 -11.68029 -11.26871 -11.11367 -11.01858 -10.72167 -10.51749 -10.44327 -10.38455 -10.20847 -9.21981 -8.89299 -8.66132 -8.11632 -8.05016 -6.42055 -4.00140 2.26762 2.54483 3.08351 3.15703 3.20682 3.21042 3.67787 3.88497 4.13784 4.54564 4.73326 5.02643 5.17097 5.31378 5.38482 5.54782 5.67758 5.87903 6.03707 6.11701 6.19451 6.36721 6.38311 6.39715 6.96148 7.01642 7.28018 7.40274 7.42577 7.85373 8.09412 8.27767 8.97297 9.21353 9.74079 10.50708 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.030231 B = 0.008708 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.975082 B = 3214.503157 C = 3567.197732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.419 5.419 3 C -0.305 4.305 4 H 0.108 0.892 5 C 0.031 3.969 6 N -0.875 5.875 7 Si 0.936 3.064 8 H -0.275 1.275 9 H -0.281 1.281 10 H -0.267 1.267 11 C 0.454 3.546 12 O -0.581 6.581 13 C 0.099 3.901 14 N -0.324 5.324 15 C 0.079 3.921 16 C -0.287 4.287 17 C 0.038 3.962 18 N -0.304 5.304 19 C -0.147 4.147 20 C -0.154 4.154 21 H 0.029 0.971 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.270 0.730 25 H 0.169 0.831 26 H 0.144 0.856 27 H 0.179 0.821 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 -6.520 -3.062 7.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.135 5.135 3 C -0.433 4.433 4 H 0.126 0.874 5 C -0.173 4.173 6 N -0.515 5.515 7 Si 0.762 3.238 8 H -0.201 1.201 9 H -0.207 1.207 10 H -0.192 1.192 11 C 0.239 3.761 12 O -0.466 6.466 13 C 0.011 3.989 14 N -0.105 5.105 15 C -0.068 4.068 16 C -0.316 4.316 17 C -0.147 4.147 18 N -0.126 5.126 19 C -0.186 4.186 20 C -0.192 4.192 21 H 0.047 0.953 22 H 0.097 0.903 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.186 0.814 26 H 0.162 0.838 27 H 0.196 0.804 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.616 -6.840 -1.734 7.526 hybrid contribution 0.202 1.298 -1.001 1.652 sum -2.414 -5.542 -2.735 6.635 Atomic orbital electron populations 1.21849 0.79733 0.97168 1.04484 1.43734 1.06397 1.04451 1.58916 1.19906 0.93920 0.81658 1.47811 0.87396 1.25422 0.95887 1.00112 0.95865 1.70157 1.07589 1.27781 1.45937 0.85767 0.79477 0.80150 0.78438 1.20083 1.20670 1.19156 1.18371 0.87034 0.82364 0.88318 1.90554 1.13053 1.85554 1.57464 1.21014 0.99997 0.96373 0.81520 1.48047 1.25133 1.30399 1.06886 1.22560 1.00469 0.98296 0.85468 1.21379 1.03044 1.06316 1.00905 1.23750 1.00269 0.99184 0.91511 1.77218 1.03519 1.13552 1.18263 1.23350 0.98342 0.95200 1.01701 1.23368 0.98076 1.02528 0.95230 0.95267 0.90272 0.91896 0.91945 0.81384 0.83842 0.80407 0.88086 0.86890 0.87429 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.60 8.68 59.85 0.52 3.12 16 2 N -0.42 -10.62 3.03 -122.19 -0.37 -10.99 16 3 C -0.31 -8.23 9.54 -14.93 -0.14 -8.37 16 4 H 0.11 3.03 7.21 -52.49 -0.38 2.65 16 5 C 0.03 0.79 5.40 -17.47 -0.09 0.69 16 6 N -0.88 -22.40 9.59 55.50 0.53 -21.87 16 7 Si 0.94 20.03 29.56 -169.99 -5.02 15.01 16 8 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 9 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 11 C 0.45 11.06 6.15 -10.98 -0.07 10.99 16 12 O -0.58 -15.86 16.31 5.54 0.09 -15.77 16 13 C 0.10 2.01 1.64 -132.97 -0.22 1.79 16 14 N -0.32 -6.29 3.03 -49.73 -0.15 -6.44 16 15 C 0.08 1.48 10.83 -17.23 -0.19 1.30 16 16 C -0.29 -4.56 10.80 -40.01 -0.43 -4.99 16 17 C 0.04 0.59 12.03 -17.36 -0.21 0.38 16 18 N -0.30 -5.48 12.04 30.63 0.37 -5.11 16 19 C -0.15 -2.55 9.98 -26.73 -0.27 -2.82 16 20 C -0.15 -2.66 9.30 -26.73 -0.25 -2.91 16 21 H 0.03 0.63 5.13 -51.93 -0.27 0.36 16 22 H 0.08 1.95 6.83 -51.93 -0.35 1.59 16 23 H 0.06 1.55 7.32 -51.93 -0.38 1.17 16 24 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 25 H 0.17 3.22 7.86 -52.48 -0.41 2.81 16 26 H 0.14 1.88 8.06 -52.48 -0.42 1.45 16 27 H 0.18 2.01 8.06 -52.48 -0.42 1.58 16 28 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.11 1.96 8.01 -51.93 -0.42 1.54 16 30 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 31 H 0.11 1.80 7.87 -51.94 -0.41 1.39 16 LS Contribution 270.16 15.07 4.07 4.07 Total: -1.00 -29.58 270.16 -5.27 -34.85 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -3.44 Total: 7.06 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.35 Total: -0.82 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.38 Total: -44.41 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.09 Total: -15.77 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.58 -5.27 -34.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931243209.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.341 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds