Wall clock time and date at job start Sun Mar 29 2020 22:21:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.37094 * 120.00086 * 2 1
4 4 H 1.07994 * 120.00198 * 186.39000 * 3 2 1
5 5 C 1.38960 * 119.99960 * 6.38508 * 3 2 1
6 6 N 1.31406 * 119.99609 * 6.45065 * 5 3 2
7 7 Si 1.86792 * 119.99880 * 186.44988 * 5 3 2
8 8 H 1.48494 * 109.47348 * 90.00222 * 7 5 3
9 9 H 1.48497 * 109.47121 * 209.99994 * 7 5 3
10 10 H 1.48503 * 109.47301 * 330.00055 * 7 5 3
11 11 C 1.34775 * 119.99937 * 179.97438 * 2 1 3
12 12 O 1.21295 * 120.00115 * 184.55087 * 11 2 1
13 13 C 1.50704 * 120.00103 * 4.55833 * 11 2 1
14 14 N 1.46500 * 115.54695 * 65.97018 * 13 11 2
15 15 C 1.34946 * 126.04258 * 20.38871 * 14 13 11
16 16 C 1.35307 * 107.75146 * 179.76800 * 15 14 13
17 17 C 1.39877 * 107.91766 * 0.22708 * 16 15 14
18 18 N 1.30830 * 108.20302 * 0.02562 * 17 16 15
19 19 C 1.52996 * 117.51732 * 211.67331 * 13 11 2
20 20 C 1.52999 * 117.49957 * 280.30464 * 13 11 2
21 21 H 1.08997 * 109.47400 * 174.53766 * 1 2 3
22 22 H 1.09002 * 109.46919 * 294.53370 * 1 2 3
23 23 H 1.08992 * 109.47239 * 54.53383 * 1 2 3
24 24 H 0.97001 * 119.99722 * 180.02562 * 6 5 3
25 25 H 1.08004 * 126.12318 * 0.03391 * 15 14 13
26 26 H 1.08006 * 126.04451 * 180.24853 * 16 15 14
27 27 H 1.08005 * 125.89432 * 179.97438 * 17 16 15
28 28 H 1.08996 * 117.49728 * 214.96861 * 19 13 11
29 29 H 1.08997 * 117.50059 * 359.97438 * 19 13 11
30 30 H 1.09004 * 117.49660 * 359.97370 * 20 13 11
31 31 H 1.08988 * 117.50078 * 144.99659 * 20 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1505 1.1873 0.0000
4 1 3.2254 1.1902 -0.1041
5 6 1.4622 2.3870 0.1338
6 7 0.1728 2.3799 0.3870
7 14 2.3699 4.0096 -0.0462
8 1 2.3406 4.4381 -1.4677
9 1 1.7116 5.0410 0.7953
10 1 3.7790 3.8397 0.3907
11 6 2.1389 -1.1672 0.0005
12 8 3.3490 -1.1689 0.0839
13 6 1.3889 -2.4703 -0.1026
14 7 0.6923 -2.6996 -1.3708
15 6 0.9571 -2.0880 -2.5441
16 6 0.0996 -2.5793 -3.4683
17 6 -0.7210 -3.5198 -2.8369
18 7 -0.3690 -3.5902 -1.5788
19 6 1.9867 -3.6878 0.6054
20 6 0.7356 -3.0121 1.1704
21 1 -0.3634 -1.0229 -0.0978
22 1 -0.3633 0.4267 0.9349
23 1 -0.3633 0.5962 -0.8369
24 1 -0.3078 3.2173 0.4801
25 1 1.7202 -1.3432 -2.7159
26 1 0.0564 -2.2957 -4.5095
27 1 -1.5096 -4.0890 -3.3067
28 1 1.8615 -4.6595 0.1276
29 1 2.9227 -3.5466 1.1456
30 1 0.8486 -2.4262 2.0826
31 1 -0.2125 -3.5391 1.0643
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000931243209.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:21:25
Heat of formation + Delta-G solvation = 96.490316 kcal
Electronic energy + Delta-G solvation = -16935.293296 eV
Core-core repulsion = 14220.764697 eV
Total energy + Delta-G solvation = -2714.528599 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.106 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.92027 -38.82069 -36.09652 -34.77938 -31.74131 -30.80295 -29.40068 -26.64595
-25.14416 -23.24628 -22.21729 -21.18071 -20.26901 -18.68327 -17.38327 -16.92741
-15.52918 -14.99393 -14.48639 -14.45994 -14.07492 -13.72784 -13.58561 -12.99597
-12.46136 -12.32381 -11.88268 -11.68029 -11.26871 -11.11367 -11.01858 -10.72167
-10.51749 -10.44327 -10.38455 -10.20847 -9.21981 -8.89299 -8.66132 -8.11632
-8.05016 -6.42055 -4.00140 2.26762 2.54483 3.08351 3.15703 3.20682
3.21042 3.67787 3.88497 4.13784 4.54564 4.73326 5.02643 5.17097
5.31378 5.38482 5.54782 5.67758 5.87903 6.03707 6.11701 6.19451
6.36721 6.38311 6.39715 6.96148 7.01642 7.28018 7.40274 7.42577
7.85373 8.09412 8.27767 8.97297 9.21353 9.74079 10.50708
Molecular weight = 235.11amu
Principal moments of inertia in cm(-1)
A = 0.030231 B = 0.008708 C = 0.007847
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 925.975082 B = 3214.503157 C = 3567.197732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.111 3.889
2 N -0.419 5.419
3 C -0.305 4.305
4 H 0.108 0.892
5 C 0.031 3.969
6 N -0.875 5.875
7 Si 0.936 3.064
8 H -0.275 1.275
9 H -0.281 1.281
10 H -0.267 1.267
11 C 0.454 3.546
12 O -0.581 6.581
13 C 0.099 3.901
14 N -0.324 5.324
15 C 0.079 3.921
16 C -0.287 4.287
17 C 0.038 3.962
18 N -0.304 5.304
19 C -0.147 4.147
20 C -0.154 4.154
21 H 0.029 0.971
22 H 0.079 0.921
23 H 0.062 0.938
24 H 0.270 0.730
25 H 0.169 0.831
26 H 0.144 0.856
27 H 0.179 0.821
28 H 0.101 0.899
29 H 0.113 0.887
30 H 0.107 0.893
31 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.878 -6.520 -3.062 7.756
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.032 4.032
2 N -0.135 5.135
3 C -0.433 4.433
4 H 0.126 0.874
5 C -0.173 4.173
6 N -0.515 5.515
7 Si 0.762 3.238
8 H -0.201 1.201
9 H -0.207 1.207
10 H -0.192 1.192
11 C 0.239 3.761
12 O -0.466 6.466
13 C 0.011 3.989
14 N -0.105 5.105
15 C -0.068 4.068
16 C -0.316 4.316
17 C -0.147 4.147
18 N -0.126 5.126
19 C -0.186 4.186
20 C -0.192 4.192
21 H 0.047 0.953
22 H 0.097 0.903
23 H 0.081 0.919
24 H 0.081 0.919
25 H 0.186 0.814
26 H 0.162 0.838
27 H 0.196 0.804
28 H 0.119 0.881
29 H 0.131 0.869
30 H 0.126 0.874
31 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -2.616 -6.840 -1.734 7.526
hybrid contribution 0.202 1.298 -1.001 1.652
sum -2.414 -5.542 -2.735 6.635
Atomic orbital electron populations
1.21849 0.79733 0.97168 1.04484 1.43734 1.06397 1.04451 1.58916
1.19906 0.93920 0.81658 1.47811 0.87396 1.25422 0.95887 1.00112
0.95865 1.70157 1.07589 1.27781 1.45937 0.85767 0.79477 0.80150
0.78438 1.20083 1.20670 1.19156 1.18371 0.87034 0.82364 0.88318
1.90554 1.13053 1.85554 1.57464 1.21014 0.99997 0.96373 0.81520
1.48047 1.25133 1.30399 1.06886 1.22560 1.00469 0.98296 0.85468
1.21379 1.03044 1.06316 1.00905 1.23750 1.00269 0.99184 0.91511
1.77218 1.03519 1.13552 1.18263 1.23350 0.98342 0.95200 1.01701
1.23368 0.98076 1.02528 0.95230 0.95267 0.90272 0.91896 0.91945
0.81384 0.83842 0.80407 0.88086 0.86890 0.87429 0.87085
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 2.60 8.68 59.85 0.52 3.12 16
2 N -0.42 -10.62 3.03 -122.19 -0.37 -10.99 16
3 C -0.31 -8.23 9.54 -14.93 -0.14 -8.37 16
4 H 0.11 3.03 7.21 -52.49 -0.38 2.65 16
5 C 0.03 0.79 5.40 -17.47 -0.09 0.69 16
6 N -0.88 -22.40 9.59 55.50 0.53 -21.87 16
7 Si 0.94 20.03 29.56 -169.99 -5.02 15.01 16
8 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16
9 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16
10 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
11 C 0.45 11.06 6.15 -10.98 -0.07 10.99 16
12 O -0.58 -15.86 16.31 5.54 0.09 -15.77 16
13 C 0.10 2.01 1.64 -132.97 -0.22 1.79 16
14 N -0.32 -6.29 3.03 -49.73 -0.15 -6.44 16
15 C 0.08 1.48 10.83 -17.23 -0.19 1.30 16
16 C -0.29 -4.56 10.80 -40.01 -0.43 -4.99 16
17 C 0.04 0.59 12.03 -17.36 -0.21 0.38 16
18 N -0.30 -5.48 12.04 30.63 0.37 -5.11 16
19 C -0.15 -2.55 9.98 -26.73 -0.27 -2.82 16
20 C -0.15 -2.66 9.30 -26.73 -0.25 -2.91 16
21 H 0.03 0.63 5.13 -51.93 -0.27 0.36 16
22 H 0.08 1.95 6.83 -51.93 -0.35 1.59 16
23 H 0.06 1.55 7.32 -51.93 -0.38 1.17 16
24 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16
25 H 0.17 3.22 7.86 -52.48 -0.41 2.81 16
26 H 0.14 1.88 8.06 -52.48 -0.42 1.45 16
27 H 0.18 2.01 8.06 -52.48 -0.42 1.58 16
28 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16
29 H 0.11 1.96 8.01 -51.93 -0.42 1.54 16
30 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16
31 H 0.11 1.80 7.87 -51.94 -0.41 1.39 16
LS Contribution 270.16 15.07 4.07 4.07
Total: -1.00 -29.58 270.16 -5.27 -34.85
By element:
Atomic # 1 Polarization: 10.50 SS G_CDS: -3.44 Total: 7.06 kcal
Atomic # 6 Polarization: 0.53 SS G_CDS: -1.35 Total: -0.82 kcal
Atomic # 7 Polarization: -44.79 SS G_CDS: 0.38 Total: -44.41 kcal
Atomic # 8 Polarization: -15.86 SS G_CDS: 0.09 Total: -15.77 kcal
Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal
Total LS contribution 4.07 Total: 4.07 kcal
Total: -29.58 -5.27 -34.85 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000931243209.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.341 kcal
(2) G-P(sol) polarization free energy of solvation -29.581 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.760 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) 96.490 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds