Wall clock time and date at job start Sun Mar 29 2020 22:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37094 * 120.00086 * 2 1 4 4 H 1.07994 * 120.00198 * 186.39000 * 3 2 1 5 5 C 1.38960 * 119.99960 * 6.38508 * 3 2 1 6 6 N 1.31406 * 119.99609 * 6.45065 * 5 3 2 7 7 Si 1.86792 * 119.99880 * 186.44988 * 5 3 2 8 8 H 1.48494 * 109.47348 * 90.00222 * 7 5 3 9 9 H 1.48497 * 109.47121 * 209.99994 * 7 5 3 10 10 H 1.48503 * 109.47301 * 330.00055 * 7 5 3 11 11 C 1.34775 * 119.99937 * 179.97438 * 2 1 3 12 12 O 1.21295 * 120.00115 * 184.55087 * 11 2 1 13 13 C 1.50704 * 120.00103 * 4.55833 * 11 2 1 14 14 N 1.46500 * 115.54695 * 65.97018 * 13 11 2 15 15 C 1.34946 * 126.04258 * 20.38871 * 14 13 11 16 16 C 1.35307 * 107.75146 * 179.76800 * 15 14 13 17 17 C 1.39877 * 107.91766 * 0.22708 * 16 15 14 18 18 N 1.30830 * 108.20302 * 0.02562 * 17 16 15 19 19 C 1.52996 * 117.51732 * 211.67331 * 13 11 2 20 20 C 1.52999 * 117.49957 * 280.30464 * 13 11 2 21 21 H 1.08997 * 109.47400 * 174.53766 * 1 2 3 22 22 H 1.09002 * 109.46919 * 294.53370 * 1 2 3 23 23 H 1.08992 * 109.47239 * 54.53383 * 1 2 3 24 24 H 0.97001 * 119.99722 * 180.02562 * 6 5 3 25 25 H 1.08004 * 126.12318 * 0.03391 * 15 14 13 26 26 H 1.08006 * 126.04451 * 180.24853 * 16 15 14 27 27 H 1.08005 * 125.89432 * 179.97438 * 17 16 15 28 28 H 1.08996 * 117.49728 * 214.96861 * 19 13 11 29 29 H 1.08997 * 117.50059 * 359.97438 * 19 13 11 30 30 H 1.09004 * 117.49660 * 359.97370 * 20 13 11 31 31 H 1.08988 * 117.50078 * 144.99659 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2254 1.1902 -0.1041 5 6 1.4622 2.3870 0.1338 6 7 0.1728 2.3799 0.3870 7 14 2.3699 4.0096 -0.0462 8 1 2.3406 4.4381 -1.4677 9 1 1.7116 5.0410 0.7953 10 1 3.7790 3.8397 0.3907 11 6 2.1389 -1.1672 0.0005 12 8 3.3490 -1.1689 0.0839 13 6 1.3889 -2.4703 -0.1026 14 7 0.6923 -2.6996 -1.3708 15 6 0.9571 -2.0880 -2.5441 16 6 0.0996 -2.5793 -3.4683 17 6 -0.7210 -3.5198 -2.8369 18 7 -0.3690 -3.5902 -1.5788 19 6 1.9867 -3.6878 0.6054 20 6 0.7356 -3.0121 1.1704 21 1 -0.3634 -1.0229 -0.0978 22 1 -0.3633 0.4267 0.9349 23 1 -0.3633 0.5962 -0.8369 24 1 -0.3078 3.2173 0.4801 25 1 1.7202 -1.3432 -2.7159 26 1 0.0564 -2.2957 -4.5095 27 1 -1.5096 -4.0890 -3.3067 28 1 1.8615 -4.6595 0.1276 29 1 2.9227 -3.5466 1.1456 30 1 0.8486 -2.4262 2.0826 31 1 -0.2125 -3.5391 1.0643 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931243209.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:24 Heat of formation + Delta-G solvation = 78.303882 kcal Electronic energy + Delta-G solvation = -16936.081919 eV Core-core repulsion = 14220.764697 eV Total energy + Delta-G solvation = -2715.317222 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.32154 -40.58119 -37.71501 -36.74651 -33.70695 -32.17329 -30.73450 -28.60003 -27.01629 -24.87690 -23.61521 -22.71930 -21.59581 -20.27685 -19.19592 -18.77536 -17.31602 -16.66952 -16.16072 -15.97794 -15.65417 -15.39370 -15.20205 -14.43168 -14.08101 -13.80164 -13.62905 -13.57307 -12.93704 -12.78443 -12.61764 -12.48513 -12.19513 -12.05756 -11.92196 -11.71165 -11.16451 -10.58935 -10.27487 -10.04717 -9.45199 -8.37622 -6.05934 0.89885 1.00047 1.38476 1.41069 1.51596 1.94452 1.97988 2.14752 2.54310 2.82377 3.03289 3.33986 3.61439 3.76723 3.97478 4.21738 4.32755 4.49888 4.52028 4.71316 4.79601 4.85245 4.99490 5.03227 5.16223 5.30868 5.35311 5.81602 5.84873 6.00976 6.29555 6.77837 6.98446 7.25575 7.78667 8.54145 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.030231 B = 0.008708 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.975082 B = 3214.503157 C = 3567.197732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.431 5.431 3 C -0.345 4.345 4 H 0.085 0.915 5 C 0.001 3.999 6 N -0.889 5.889 7 Si 0.999 3.001 8 H -0.267 1.267 9 H -0.269 1.269 10 H -0.272 1.272 11 C 0.453 3.547 12 O -0.620 6.620 13 C 0.075 3.925 14 N -0.337 5.337 15 C 0.044 3.956 16 C -0.271 4.271 17 C 0.048 3.952 18 N -0.318 5.318 19 C -0.131 4.131 20 C -0.134 4.134 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.046 0.954 24 H 0.277 0.723 25 H 0.149 0.851 26 H 0.173 0.827 27 H 0.224 0.776 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 -7.193 -3.765 9.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.147 5.147 3 C -0.473 4.473 4 H 0.103 0.897 5 C -0.202 4.202 6 N -0.527 5.527 7 Si 0.821 3.179 8 H -0.192 1.192 9 H -0.193 1.193 10 H -0.197 1.197 11 C 0.240 3.760 12 O -0.508 6.508 13 C -0.013 4.013 14 N -0.118 5.118 15 C -0.103 4.103 16 C -0.300 4.300 17 C -0.137 4.137 18 N -0.139 5.139 19 C -0.170 4.170 20 C -0.172 4.172 21 H 0.064 0.936 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.167 0.833 26 H 0.191 0.809 27 H 0.241 0.759 28 H 0.137 0.863 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.045 -7.519 -2.440 8.879 hybrid contribution 0.601 1.454 -0.846 1.786 sum -3.444 -6.065 -3.286 7.710 Atomic orbital electron populations 1.21565 0.78771 0.97634 1.02853 1.43886 1.06975 1.04571 1.59220 1.19882 0.93399 0.83272 1.50699 0.89690 1.26192 0.96710 1.02633 0.94666 1.70225 1.08348 1.28941 1.45211 0.84844 0.78009 0.76160 0.78841 1.19169 1.19312 1.19654 1.19010 0.86859 0.83556 0.86550 1.90506 1.14967 1.86641 1.58685 1.20647 1.02091 0.95133 0.83471 1.47932 1.26035 1.31499 1.06360 1.22649 1.01697 0.99350 0.86559 1.21752 1.01438 1.05097 1.01705 1.24518 1.00273 0.98416 0.90505 1.77202 1.03239 1.13638 1.19864 1.23409 0.98255 0.94808 1.00509 1.23432 0.98744 1.01512 0.93546 0.93567 0.91642 0.93551 0.91305 0.83300 0.80948 0.75926 0.86253 0.87282 0.87388 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.41 8.68 127.77 1.11 7.52 16 2 N -0.43 -22.51 3.03 -658.89 -1.99 -24.50 16 3 C -0.35 -19.27 9.54 84.04 0.80 -18.47 16 4 H 0.09 5.03 7.21 -2.91 -0.02 5.01 16 5 C 0.00 0.03 5.40 84.93 0.46 0.49 16 6 N -0.89 -45.61 9.59 21.67 0.21 -45.40 16 7 Si 1.00 41.15 29.56 68.60 2.03 43.18 16 8 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 9 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 C 0.45 22.74 6.15 87.66 0.54 23.28 16 12 O -0.62 -35.26 16.31 -3.08 -0.05 -35.31 16 13 C 0.08 3.02 1.64 2.86 0.00 3.03 16 14 N -0.34 -12.79 3.03 -311.26 -0.94 -13.73 16 15 C 0.04 1.62 10.83 83.54 0.90 2.52 16 16 C -0.27 -7.93 10.80 21.99 0.24 -7.69 16 17 C 0.05 1.31 12.03 85.24 1.03 2.34 16 18 N -0.32 -10.65 12.04 -57.02 -0.69 -11.33 16 19 C -0.13 -4.41 9.98 30.59 0.31 -4.10 16 20 C -0.13 -4.46 9.30 30.59 0.28 -4.17 16 21 H 0.05 2.00 5.13 -2.39 -0.01 1.99 16 22 H 0.07 3.26 6.83 -2.39 -0.02 3.24 16 23 H 0.05 2.32 7.32 -2.39 -0.02 2.30 16 24 H 0.28 13.22 8.31 -92.71 -0.77 12.44 16 25 H 0.15 5.97 7.86 -2.91 -0.02 5.95 16 26 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 27 H 0.22 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 29 H 0.11 3.73 8.01 -2.39 -0.02 3.72 16 30 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16 31 H 0.13 3.82 7.87 -2.39 -0.02 3.80 16 Total: -1.00 -64.75 270.16 5.37 -59.38 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 1.14 Total: 22.97 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.67 Total: 4.75 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -3.41 Total: -94.96 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.05 Total: -35.31 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -64.75 5.37 -59.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931243209.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.686 kcal (2) G-P(sol) polarization free energy of solvation -64.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds