Wall clock time and date at job start Sun Mar 29 2020 22:21:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.37094 * 120.00086 * 2 1
4 4 H 1.07994 * 120.00198 * 186.39000 * 3 2 1
5 5 C 1.38960 * 119.99960 * 6.38508 * 3 2 1
6 6 N 1.31406 * 119.99609 * 6.45065 * 5 3 2
7 7 Si 1.86792 * 119.99880 * 186.44988 * 5 3 2
8 8 H 1.48494 * 109.47348 * 90.00222 * 7 5 3
9 9 H 1.48497 * 109.47121 * 209.99994 * 7 5 3
10 10 H 1.48503 * 109.47301 * 330.00055 * 7 5 3
11 11 C 1.34775 * 119.99937 * 179.97438 * 2 1 3
12 12 O 1.21295 * 120.00115 * 184.55087 * 11 2 1
13 13 C 1.50704 * 120.00103 * 4.55833 * 11 2 1
14 14 N 1.46500 * 115.54695 * 65.97018 * 13 11 2
15 15 C 1.34946 * 126.04258 * 20.38871 * 14 13 11
16 16 C 1.35307 * 107.75146 * 179.76800 * 15 14 13
17 17 C 1.39877 * 107.91766 * 0.22708 * 16 15 14
18 18 N 1.30830 * 108.20302 * 0.02562 * 17 16 15
19 19 C 1.52996 * 117.51732 * 211.67331 * 13 11 2
20 20 C 1.52999 * 117.49957 * 280.30464 * 13 11 2
21 21 H 1.08997 * 109.47400 * 174.53766 * 1 2 3
22 22 H 1.09002 * 109.46919 * 294.53370 * 1 2 3
23 23 H 1.08992 * 109.47239 * 54.53383 * 1 2 3
24 24 H 0.97001 * 119.99722 * 180.02562 * 6 5 3
25 25 H 1.08004 * 126.12318 * 0.03391 * 15 14 13
26 26 H 1.08006 * 126.04451 * 180.24853 * 16 15 14
27 27 H 1.08005 * 125.89432 * 179.97438 * 17 16 15
28 28 H 1.08996 * 117.49728 * 214.96861 * 19 13 11
29 29 H 1.08997 * 117.50059 * 359.97438 * 19 13 11
30 30 H 1.09004 * 117.49660 * 359.97370 * 20 13 11
31 31 H 1.08988 * 117.50078 * 144.99659 * 20 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1505 1.1873 0.0000
4 1 3.2254 1.1902 -0.1041
5 6 1.4622 2.3870 0.1338
6 7 0.1728 2.3799 0.3870
7 14 2.3699 4.0096 -0.0462
8 1 2.3406 4.4381 -1.4677
9 1 1.7116 5.0410 0.7953
10 1 3.7790 3.8397 0.3907
11 6 2.1389 -1.1672 0.0005
12 8 3.3490 -1.1689 0.0839
13 6 1.3889 -2.4703 -0.1026
14 7 0.6923 -2.6996 -1.3708
15 6 0.9571 -2.0880 -2.5441
16 6 0.0996 -2.5793 -3.4683
17 6 -0.7210 -3.5198 -2.8369
18 7 -0.3690 -3.5902 -1.5788
19 6 1.9867 -3.6878 0.6054
20 6 0.7356 -3.0121 1.1704
21 1 -0.3634 -1.0229 -0.0978
22 1 -0.3633 0.4267 0.9349
23 1 -0.3633 0.5962 -0.8369
24 1 -0.3078 3.2173 0.4801
25 1 1.7202 -1.3432 -2.7159
26 1 0.0564 -2.2957 -4.5095
27 1 -1.5096 -4.0890 -3.3067
28 1 1.8615 -4.6595 0.1276
29 1 2.9227 -3.5466 1.1456
30 1 0.8486 -2.4262 2.0826
31 1 -0.2125 -3.5391 1.0643
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000931243209.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:21:24
Heat of formation + Delta-G solvation = 78.303882 kcal
Electronic energy + Delta-G solvation = -16936.081919 eV
Core-core repulsion = 14220.764697 eV
Total energy + Delta-G solvation = -2715.317222 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.106 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-42.32154 -40.58119 -37.71501 -36.74651 -33.70695 -32.17329 -30.73450 -28.60003
-27.01629 -24.87690 -23.61521 -22.71930 -21.59581 -20.27685 -19.19592 -18.77536
-17.31602 -16.66952 -16.16072 -15.97794 -15.65417 -15.39370 -15.20205 -14.43168
-14.08101 -13.80164 -13.62905 -13.57307 -12.93704 -12.78443 -12.61764 -12.48513
-12.19513 -12.05756 -11.92196 -11.71165 -11.16451 -10.58935 -10.27487 -10.04717
-9.45199 -8.37622 -6.05934 0.89885 1.00047 1.38476 1.41069 1.51596
1.94452 1.97988 2.14752 2.54310 2.82377 3.03289 3.33986 3.61439
3.76723 3.97478 4.21738 4.32755 4.49888 4.52028 4.71316 4.79601
4.85245 4.99490 5.03227 5.16223 5.30868 5.35311 5.81602 5.84873
6.00976 6.29555 6.77837 6.98446 7.25575 7.78667 8.54145
Molecular weight = 235.11amu
Principal moments of inertia in cm(-1)
A = 0.030231 B = 0.008708 C = 0.007847
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 925.975082 B = 3214.503157 C = 3567.197732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.135 3.865
2 N -0.431 5.431
3 C -0.345 4.345
4 H 0.085 0.915
5 C 0.001 3.999
6 N -0.889 5.889
7 Si 0.999 3.001
8 H -0.267 1.267
9 H -0.269 1.269
10 H -0.272 1.272
11 C 0.453 3.547
12 O -0.620 6.620
13 C 0.075 3.925
14 N -0.337 5.337
15 C 0.044 3.956
16 C -0.271 4.271
17 C 0.048 3.952
18 N -0.318 5.318
19 C -0.131 4.131
20 C -0.134 4.134
21 H 0.046 0.954
22 H 0.065 0.935
23 H 0.046 0.954
24 H 0.277 0.723
25 H 0.149 0.851
26 H 0.173 0.827
27 H 0.224 0.776
28 H 0.119 0.881
29 H 0.109 0.891
30 H 0.108 0.892
31 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.277 -7.193 -3.765 9.176
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.008 4.008
2 N -0.147 5.147
3 C -0.473 4.473
4 H 0.103 0.897
5 C -0.202 4.202
6 N -0.527 5.527
7 Si 0.821 3.179
8 H -0.192 1.192
9 H -0.193 1.193
10 H -0.197 1.197
11 C 0.240 3.760
12 O -0.508 6.508
13 C -0.013 4.013
14 N -0.118 5.118
15 C -0.103 4.103
16 C -0.300 4.300
17 C -0.137 4.137
18 N -0.139 5.139
19 C -0.170 4.170
20 C -0.172 4.172
21 H 0.064 0.936
22 H 0.084 0.916
23 H 0.064 0.936
24 H 0.087 0.913
25 H 0.167 0.833
26 H 0.191 0.809
27 H 0.241 0.759
28 H 0.137 0.863
29 H 0.127 0.873
30 H 0.126 0.874
31 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -4.045 -7.519 -2.440 8.879
hybrid contribution 0.601 1.454 -0.846 1.786
sum -3.444 -6.065 -3.286 7.710
Atomic orbital electron populations
1.21565 0.78771 0.97634 1.02853 1.43886 1.06975 1.04571 1.59220
1.19882 0.93399 0.83272 1.50699 0.89690 1.26192 0.96710 1.02633
0.94666 1.70225 1.08348 1.28941 1.45211 0.84844 0.78009 0.76160
0.78841 1.19169 1.19312 1.19654 1.19010 0.86859 0.83556 0.86550
1.90506 1.14967 1.86641 1.58685 1.20647 1.02091 0.95133 0.83471
1.47932 1.26035 1.31499 1.06360 1.22649 1.01697 0.99350 0.86559
1.21752 1.01438 1.05097 1.01705 1.24518 1.00273 0.98416 0.90505
1.77202 1.03239 1.13638 1.19864 1.23409 0.98255 0.94808 1.00509
1.23432 0.98744 1.01512 0.93546 0.93567 0.91642 0.93551 0.91305
0.83300 0.80948 0.75926 0.86253 0.87282 0.87388 0.85447
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.13 6.41 8.68 127.77 1.11 7.52 16
2 N -0.43 -22.51 3.03 -658.89 -1.99 -24.50 16
3 C -0.35 -19.27 9.54 84.04 0.80 -18.47 16
4 H 0.09 5.03 7.21 -2.91 -0.02 5.01 16
5 C 0.00 0.03 5.40 84.93 0.46 0.49 16
6 N -0.89 -45.61 9.59 21.67 0.21 -45.40 16
7 Si 1.00 41.15 29.56 68.60 2.03 43.18 16
8 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16
9 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16
10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
11 C 0.45 22.74 6.15 87.66 0.54 23.28 16
12 O -0.62 -35.26 16.31 -3.08 -0.05 -35.31 16
13 C 0.08 3.02 1.64 2.86 0.00 3.03 16
14 N -0.34 -12.79 3.03 -311.26 -0.94 -13.73 16
15 C 0.04 1.62 10.83 83.54 0.90 2.52 16
16 C -0.27 -7.93 10.80 21.99 0.24 -7.69 16
17 C 0.05 1.31 12.03 85.24 1.03 2.34 16
18 N -0.32 -10.65 12.04 -57.02 -0.69 -11.33 16
19 C -0.13 -4.41 9.98 30.59 0.31 -4.10 16
20 C -0.13 -4.46 9.30 30.59 0.28 -4.17 16
21 H 0.05 2.00 5.13 -2.39 -0.01 1.99 16
22 H 0.07 3.26 6.83 -2.39 -0.02 3.24 16
23 H 0.05 2.32 7.32 -2.39 -0.02 2.30 16
24 H 0.28 13.22 8.31 -92.71 -0.77 12.44 16
25 H 0.15 5.97 7.86 -2.91 -0.02 5.95 16
26 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16
27 H 0.22 3.83 8.06 -2.91 -0.02 3.81 16
28 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16
29 H 0.11 3.73 8.01 -2.39 -0.02 3.72 16
30 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16
31 H 0.13 3.82 7.87 -2.39 -0.02 3.80 16
Total: -1.00 -64.75 270.16 5.37 -59.38
By element:
Atomic # 1 Polarization: 21.83 SS G_CDS: 1.14 Total: 22.97 kcal
Atomic # 6 Polarization: -0.93 SS G_CDS: 5.67 Total: 4.75 kcal
Atomic # 7 Polarization: -91.55 SS G_CDS: -3.41 Total: -94.96 kcal
Atomic # 8 Polarization: -35.26 SS G_CDS: -0.05 Total: -35.31 kcal
Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal
Total: -64.75 5.37 -59.38 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000931243209.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.686 kcal
(2) G-P(sol) polarization free energy of solvation -64.754 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.932 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.382 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.304 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds