Wall clock time and date at job start Sun Mar 29 2020 21:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31878 * 119.02232 * 2 1 4 4 C 1.32298 * 120.78078 * 180.02562 * 3 2 1 5 5 C 1.38303 * 119.14651 * 0.02562 * 4 3 2 6 6 C 1.39015 * 118.66520 * 0.02562 * 5 4 3 7 7 O 1.35512 * 120.63066 * 179.97438 * 6 5 4 8 8 N 1.31774 * 119.02192 * 179.97438 * 2 1 3 9 9 C 1.50858 * 108.44738 * 180.02562 * 5 4 3 10 10 N 1.48130 * 105.64328 * 342.67435 * 9 5 4 11 11 C 1.46890 * 111.00013 * 146.67751 * 10 9 5 12 12 C 1.50697 * 109.47302 * 60.66679 * 11 10 9 13 13 H 1.07997 * 120.00272 * 5.15409 * 12 11 10 14 14 C 1.37884 * 120.00021 * 185.16012 * 12 11 10 15 15 N 1.31515 * 120.00007 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99670 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47578 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47092 * 119.99945 * 16 14 12 19 19 H 1.48509 * 109.47131 * 239.99384 * 16 14 12 20 20 C 1.48106 * 103.88470 * 27.31178 * 10 9 5 21 21 H 1.08995 * 109.47363 * 89.99693 * 1 2 3 22 22 H 1.09000 * 109.46670 * 209.99279 * 1 2 3 23 23 H 1.08997 * 109.46959 * 329.98868 * 1 2 3 24 24 H 0.96705 * 114.00398 * 89.99662 * 7 6 5 25 25 H 1.08994 * 110.21264 * 223.62997 * 9 5 4 26 26 H 1.09004 * 110.21074 * 101.71684 * 9 5 4 27 27 H 1.09003 * 109.46947 * 180.66362 * 11 10 9 28 28 H 1.08998 * 109.47285 * 300.66192 * 11 10 9 29 29 H 0.97003 * 119.99763 * 180.02562 * 15 14 12 30 30 H 1.09004 * 110.20217 * 91.71826 * 20 10 9 31 31 H 1.08998 * 110.20359 * 213.59847 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1532 0.0000 4 6 3.4692 1.1938 -0.0005 5 6 4.1796 0.0071 -0.0016 6 6 3.4755 -1.1915 -0.0026 7 8 4.1312 -2.3775 -0.0042 8 7 2.1463 -1.1523 0.0005 9 6 5.6526 0.3325 -0.0013 10 7 5.7489 1.7487 -0.4249 11 6 6.8758 2.4203 0.2359 12 6 8.1618 1.7296 -0.1384 13 1 8.1540 0.9306 -0.8649 14 6 9.3485 2.1177 0.4468 15 7 9.3581 3.0910 1.3312 16 14 10.9423 1.2610 -0.0168 17 1 10.6631 0.2079 -1.0257 18 1 11.8903 2.2528 -0.5852 19 1 11.5409 0.6409 1.1926 20 6 4.4575 2.3356 0.0010 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8901 0.5137 23 1 -0.3633 0.8899 0.5140 24 1 4.3220 -2.7227 0.8787 25 1 6.1800 -0.3085 -0.7077 26 1 6.0652 0.2100 1.0002 27 1 6.9163 3.4616 -0.0838 28 1 6.7414 2.3772 1.3167 29 1 10.1930 3.3642 1.7426 30 1 4.5468 2.7549 1.0032 31 1 4.1436 3.1059 -0.7034 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931320498.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:21 Heat of formation + Delta-G solvation = 23.087196 kcal Electronic energy + Delta-G solvation = -16136.099387 eV Core-core repulsion = 13418.387789 eV Total energy + Delta-G solvation = -2717.711598 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.42291 -37.92387 -37.51482 -33.50490 -32.64198 -31.86247 -29.33369 -28.24780 -26.11930 -24.31106 -22.28461 -21.82042 -20.58521 -18.64422 -17.81792 -16.53097 -16.03026 -15.21985 -14.70246 -14.58875 -14.15613 -13.88652 -13.57581 -12.89315 -12.70087 -12.44442 -12.33131 -12.23371 -11.85656 -11.78420 -11.23297 -10.81080 -10.75935 -10.41651 -10.27295 -10.09544 -9.35491 -9.17640 -9.03011 -8.55385 -7.63403 -6.15826 -4.18558 0.91910 1.03454 3.24762 3.32837 3.33432 3.37789 3.66634 3.71792 4.34125 4.42162 4.58218 4.92024 4.98213 5.21343 5.25477 5.43977 5.46523 5.64442 5.78787 5.89095 6.01639 6.11010 6.32073 6.42686 6.83525 6.99716 7.08898 7.39710 7.54883 7.73520 7.93774 8.13088 8.27331 8.89369 9.47180 10.95247 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.043274 B = 0.005995 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.883381 B = 4669.132761 C = 5194.015853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.330 3.670 3 N -0.515 5.515 4 C 0.185 3.815 5 C -0.222 4.222 6 C 0.370 3.630 7 O -0.473 6.473 8 N -0.541 5.541 9 C 0.103 3.897 10 N -0.498 5.498 11 C 0.181 3.819 12 C -0.516 4.516 13 H 0.066 0.934 14 C 0.059 3.941 15 N -0.896 5.896 16 Si 0.900 3.100 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.080 3.920 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.405 0.595 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.003 0.997 29 H 0.263 0.737 30 H 0.074 0.926 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 -6.074 0.513 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.062 3.938 3 N -0.232 5.232 4 C 0.038 3.962 5 C -0.228 4.228 6 C 0.184 3.816 7 O -0.280 6.280 8 N -0.266 5.266 9 C -0.026 4.026 10 N -0.223 5.223 11 C 0.056 3.944 12 C -0.555 4.555 13 H 0.084 0.916 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.727 3.273 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.049 4.049 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.105 0.895 24 H 0.263 0.737 25 H 0.113 0.887 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.544 -5.906 -0.542 14.785 hybrid contribution 1.822 -0.635 1.176 2.260 sum -11.722 -6.541 0.634 13.438 Atomic orbital electron populations 1.20526 0.85326 1.04047 1.03876 1.22960 0.97705 0.81843 0.91256 1.67432 1.09140 1.30356 1.16253 1.22365 0.89300 0.96161 0.88389 1.22690 1.01168 0.94434 1.04490 1.18771 0.86328 0.84646 0.91870 1.84713 1.74626 1.34612 1.34028 1.67843 1.09167 1.31648 1.17952 1.21305 0.87414 0.92651 1.01233 1.65619 1.01248 1.00933 1.54469 1.20076 0.86946 0.95197 0.92212 1.21129 0.90989 1.19166 1.24175 0.91576 1.24983 0.99366 0.95154 0.94843 1.69959 1.27230 1.28315 1.27959 0.86408 0.82987 0.79540 0.78338 1.19516 1.20861 1.21014 1.21761 0.87949 0.93730 1.01472 0.89663 0.89704 0.89477 0.73661 0.88741 0.91239 0.94319 0.97874 0.92755 0.90806 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.31 36.01 0.37 -0.43 16 2 C 0.33 4.95 7.64 -157.14 -1.20 3.75 16 3 N -0.52 -8.58 10.34 -6.95 -0.07 -8.65 16 4 C 0.18 3.27 7.50 -82.22 -0.62 2.65 16 5 C -0.22 -3.91 6.28 -104.23 -0.65 -4.56 16 6 C 0.37 6.04 7.84 -16.77 -0.13 5.90 16 7 O -0.47 -6.58 13.58 -18.23 -0.25 -6.83 16 8 N -0.54 -8.65 10.36 -10.82 -0.11 -8.76 16 9 C 0.10 1.98 5.66 -4.22 -0.02 1.95 16 10 N -0.50 -10.52 5.54 -236.55 -1.31 -11.83 16 11 C 0.18 4.46 4.49 -4.98 -0.02 4.43 16 12 C -0.52 -13.84 8.59 -34.44 -0.30 -14.14 16 13 H 0.07 1.77 7.46 -52.49 -0.39 1.37 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -25.55 13.29 55.43 0.74 -24.81 16 16 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.08 1.44 6.61 -4.16 -0.03 1.41 16 21 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.40 3.47 9.06 45.56 0.41 3.88 16 25 H 0.09 1.86 7.99 -51.93 -0.42 1.44 16 26 H 0.07 1.37 7.76 -51.93 -0.40 0.96 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.00 0.09 7.91 -51.93 -0.41 -0.32 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.07 1.30 7.70 -51.93 -0.40 0.90 16 31 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 LS Contribution 271.25 15.07 4.09 4.09 Total: -1.00 -31.19 271.25 -7.49 -38.68 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -2.86 Total: -0.24 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.70 Total: 2.47 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.76 Total: -54.05 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.25 Total: -6.83 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.19 -7.49 -38.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931320498.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.768 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds