Wall clock time and date at job start Sun Mar 29 2020 21:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31878 * 119.02232 * 2 1 4 4 C 1.32298 * 120.78078 * 180.02562 * 3 2 1 5 5 C 1.38303 * 119.14651 * 0.02562 * 4 3 2 6 6 C 1.39015 * 118.66520 * 0.02562 * 5 4 3 7 7 O 1.35512 * 120.63066 * 179.97438 * 6 5 4 8 8 N 1.31774 * 119.02192 * 179.97438 * 2 1 3 9 9 C 1.50858 * 108.44738 * 180.02562 * 5 4 3 10 10 N 1.48130 * 105.64328 * 342.67435 * 9 5 4 11 11 C 1.46890 * 111.00013 * 146.67751 * 10 9 5 12 12 C 1.50697 * 109.47302 * 60.66679 * 11 10 9 13 13 H 1.07997 * 120.00272 * 5.15409 * 12 11 10 14 14 C 1.37884 * 120.00021 * 185.16012 * 12 11 10 15 15 N 1.31515 * 120.00007 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99670 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47578 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47092 * 119.99945 * 16 14 12 19 19 H 1.48509 * 109.47131 * 239.99384 * 16 14 12 20 20 C 1.48106 * 103.88470 * 27.31178 * 10 9 5 21 21 H 1.08995 * 109.47363 * 89.99693 * 1 2 3 22 22 H 1.09000 * 109.46670 * 209.99279 * 1 2 3 23 23 H 1.08997 * 109.46959 * 329.98868 * 1 2 3 24 24 H 0.96705 * 114.00398 * 89.99662 * 7 6 5 25 25 H 1.08994 * 110.21264 * 223.62997 * 9 5 4 26 26 H 1.09004 * 110.21074 * 101.71684 * 9 5 4 27 27 H 1.09003 * 109.46947 * 180.66362 * 11 10 9 28 28 H 1.08998 * 109.47285 * 300.66192 * 11 10 9 29 29 H 0.97003 * 119.99763 * 180.02562 * 15 14 12 30 30 H 1.09004 * 110.20217 * 91.71826 * 20 10 9 31 31 H 1.08998 * 110.20359 * 213.59847 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1532 0.0000 4 6 3.4692 1.1938 -0.0005 5 6 4.1796 0.0071 -0.0016 6 6 3.4755 -1.1915 -0.0026 7 8 4.1312 -2.3775 -0.0042 8 7 2.1463 -1.1523 0.0005 9 6 5.6526 0.3325 -0.0013 10 7 5.7489 1.7487 -0.4249 11 6 6.8758 2.4203 0.2359 12 6 8.1618 1.7296 -0.1384 13 1 8.1540 0.9306 -0.8649 14 6 9.3485 2.1177 0.4468 15 7 9.3581 3.0910 1.3312 16 14 10.9423 1.2610 -0.0168 17 1 10.6631 0.2079 -1.0257 18 1 11.8903 2.2528 -0.5852 19 1 11.5409 0.6409 1.1926 20 6 4.4575 2.3356 0.0010 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8901 0.5137 23 1 -0.3633 0.8899 0.5140 24 1 4.3220 -2.7227 0.8787 25 1 6.1800 -0.3085 -0.7077 26 1 6.0652 0.2100 1.0002 27 1 6.9163 3.4616 -0.0838 28 1 6.7414 2.3772 1.3167 29 1 10.1930 3.3642 1.7426 30 1 4.5468 2.7549 1.0032 31 1 4.1436 3.1059 -0.7034 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931320498.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:21 Heat of formation + Delta-G solvation = -2.963044 kcal Electronic energy + Delta-G solvation = -16137.229010 eV Core-core repulsion = 13418.387789 eV Total energy + Delta-G solvation = -2718.841221 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.71392 -39.38569 -38.71814 -35.28906 -34.08925 -33.27863 -30.62571 -29.85801 -27.70944 -25.87790 -23.85861 -23.07063 -22.24036 -19.82087 -19.13641 -18.54922 -17.31007 -16.78471 -16.36326 -16.11949 -15.50017 -15.15161 -15.05596 -14.32037 -14.15717 -14.03035 -13.67374 -13.34319 -13.18082 -13.02599 -12.95715 -12.61344 -12.58003 -12.08955 -11.74111 -11.56681 -11.29355 -10.69190 -10.46468 -10.35367 -9.30835 -8.24532 -6.34508 -0.33005 -0.26098 1.41833 1.43783 1.56501 2.17910 2.35464 2.44469 2.47567 3.08182 3.12451 3.17390 3.48173 3.68620 4.08353 4.31098 4.35187 4.51692 4.58238 4.72746 4.73122 4.88669 4.92086 5.00948 5.11375 5.30646 5.56088 5.72749 5.81567 6.01121 6.30449 6.43970 6.79944 6.89529 7.35877 8.87266 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.043274 B = 0.005995 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.883381 B = 4669.132761 C = 5194.015853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.330 3.670 3 N -0.525 5.525 4 C 0.180 3.820 5 C -0.242 4.242 6 C 0.382 3.618 7 O -0.476 6.476 8 N -0.547 5.547 9 C 0.112 3.888 10 N -0.510 5.510 11 C 0.197 3.803 12 C -0.530 4.530 13 H 0.064 0.936 14 C 0.009 3.991 15 N -0.930 5.930 16 Si 0.967 3.033 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.277 1.277 20 C 0.082 3.918 21 H 0.103 0.897 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.428 0.572 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.018 0.982 28 H -0.017 1.017 29 H 0.266 0.734 30 H 0.076 0.924 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.852 -7.316 0.188 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.064 3.936 3 N -0.242 5.242 4 C 0.033 3.967 5 C -0.248 4.248 6 C 0.195 3.805 7 O -0.287 6.287 8 N -0.273 5.273 9 C -0.017 4.017 10 N -0.234 5.234 11 C 0.071 3.929 12 C -0.568 4.568 13 H 0.082 0.918 14 C -0.190 4.190 15 N -0.570 5.570 16 Si 0.792 3.208 17 H -0.189 1.189 18 H -0.205 1.205 19 H -0.203 1.203 20 C -0.046 4.046 21 H 0.121 0.879 22 H 0.120 0.880 23 H 0.120 0.880 24 H 0.291 0.709 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.001 0.999 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.573 -7.165 -0.856 16.262 hybrid contribution 2.021 -0.293 1.279 2.410 sum -12.552 -7.459 0.424 14.607 Atomic orbital electron populations 1.20751 0.81754 1.05633 1.05411 1.23982 0.99656 0.81083 0.88910 1.67530 1.08329 1.31246 1.17099 1.22235 0.89966 0.95718 0.88761 1.22496 0.99858 0.95332 1.07128 1.18847 0.86590 0.84839 0.90265 1.84653 1.74377 1.33536 1.36117 1.68037 1.08672 1.31962 1.18622 1.21080 0.88905 0.91357 1.00337 1.65462 1.01663 1.02009 1.54276 1.19719 0.87947 0.94278 0.90984 1.21407 0.92127 1.19183 1.24101 0.91827 1.25827 1.02766 0.95726 0.94656 1.70067 1.28271 1.29662 1.28983 0.85358 0.78659 0.78520 0.78251 1.18850 1.20467 1.20296 1.21700 0.86827 0.94246 1.01877 0.87898 0.87955 0.88043 0.70891 0.89557 0.92277 0.96357 0.99904 0.92492 0.90605 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.31 71.24 0.73 -0.57 16 2 C 0.33 9.15 7.64 138.73 1.06 10.21 16 3 N -0.52 -16.66 10.34 -175.91 -1.82 -18.48 16 4 C 0.18 6.25 7.50 42.60 0.32 6.57 16 5 C -0.24 -8.41 6.28 -19.61 -0.12 -8.54 16 6 C 0.38 11.89 7.84 84.71 0.66 12.55 16 7 O -0.48 -12.42 13.58 -88.14 -1.20 -13.61 16 8 N -0.55 -16.31 10.36 -300.74 -3.12 -19.42 16 9 C 0.11 4.38 5.66 85.37 0.48 4.86 16 10 N -0.51 -21.96 5.54 -902.32 -5.00 -26.95 16 11 C 0.20 10.01 4.49 85.56 0.38 10.40 16 12 C -0.53 -28.87 8.59 25.60 0.22 -28.65 16 13 H 0.06 3.43 7.46 -2.91 -0.02 3.41 16 14 C 0.01 0.50 5.46 84.66 0.46 0.97 16 15 N -0.93 -53.77 13.29 21.45 0.28 -53.48 16 16 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 20 C 0.08 2.98 6.61 85.42 0.56 3.54 16 21 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.43 6.48 9.06 -74.05 -0.67 5.81 16 25 H 0.09 3.44 7.99 -2.39 -0.02 3.42 16 26 H 0.06 2.39 7.76 -2.39 -0.02 2.38 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H -0.02 -0.91 7.91 -2.39 -0.02 -0.93 16 29 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.08 2.72 7.70 -2.38 -0.02 2.70 16 31 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 Total: -1.00 -66.03 271.25 -3.56 -69.59 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.49 Total: 6.16 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 4.77 Total: 11.34 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -9.65 Total: -118.34 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -1.20 Total: -13.61 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -66.03 -3.56 -69.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931320498.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.628 kcal (2) G-P(sol) polarization free energy of solvation -66.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds