Wall clock time and date at job start Sun Mar 29 2020 22:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35860 * 126.17632 * 2 1 4 4 N 1.30173 * 109.10724 * 179.97438 * 3 2 1 5 5 C 1.35802 * 109.02041 * 359.97438 * 4 3 2 6 6 C 1.46780 * 126.24620 * 179.97438 * 5 4 3 7 7 C 1.35178 * 120.00333 * 0.02589 * 6 5 4 8 8 C 1.41752 * 120.00141 * 179.97438 * 7 6 5 9 9 O 1.21753 * 119.99917 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99970 * 179.72973 * 8 7 6 11 11 C 1.46490 * 120.00004 * 180.27908 * 10 8 7 12 12 C 1.50702 * 109.47610 * 179.97438 * 11 10 8 13 13 H 1.08010 * 119.99188 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00564 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99836 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00096 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46973 * 90.00363 * 16 14 12 18 18 H 1.48497 * 109.46950 * 210.00146 * 16 14 12 19 19 H 1.48500 * 109.47089 * 330.00542 * 16 14 12 20 20 C 1.36055 * 126.17890 * 180.25806 * 2 1 3 21 21 H 1.08997 * 109.47012 * 89.97865 * 1 2 3 22 22 H 1.09003 * 109.46896 * 209.98157 * 1 2 3 23 23 H 1.08995 * 109.47483 * 329.97840 * 1 2 3 24 24 H 1.07993 * 125.44533 * 359.95804 * 3 2 1 25 25 H 1.08001 * 119.99534 * 180.02562 * 6 5 4 26 26 H 1.08002 * 119.99603 * 0.02562 * 7 6 5 27 27 H 0.97000 * 119.99736 * 0.27176 * 10 8 7 28 28 H 1.08999 * 109.47361 * 299.99585 * 11 10 8 29 29 H 1.09003 * 109.47771 * 59.99365 * 11 10 8 30 30 H 0.97000 * 119.99613 * 180.02562 * 15 14 12 31 31 H 1.07996 * 126.64157 * 0.02883 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0967 0.0000 4 7 3.5113 0.7146 0.0006 5 6 3.5575 -0.6427 0.0015 6 6 4.7702 -1.4697 0.0018 7 6 5.9882 -0.8834 0.0017 8 6 7.1593 -1.6822 0.0025 9 8 7.0680 -2.8963 0.0029 10 7 8.3736 -1.0977 -0.0031 11 6 9.5838 -1.9231 -0.0084 12 6 10.7995 -1.0325 -0.0148 13 1 10.6822 0.0412 -0.0145 14 6 12.0613 -1.5881 -0.0200 15 7 12.2040 -2.8955 -0.0198 16 14 13.5681 -0.4840 -0.0271 17 1 13.9734 -0.1908 1.3710 18 1 14.6809 -1.1699 -0.7316 19 1 13.2476 0.7862 -0.7264 20 6 2.2681 -1.0982 -0.0049 21 1 -0.3633 0.0004 -1.0276 22 1 -0.3633 -0.8902 0.5136 23 1 -0.3634 0.8897 0.5141 24 1 1.9264 2.1215 -0.0006 25 1 4.6892 -2.5467 0.0022 26 1 6.0691 0.1935 0.0017 27 1 8.4463 -0.1304 -0.0038 28 1 9.5986 -2.5521 0.8817 29 1 9.5905 -2.5527 -0.8982 30 1 13.0917 -3.2864 -0.0231 31 1 1.9491 -2.1300 -0.0100 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935694610.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:53 Heat of formation + Delta-G solvation = 36.697375 kcal Electronic energy + Delta-G solvation = -15040.894937 eV Core-core repulsion = 12323.773521 eV Total energy + Delta-G solvation = -2717.121416 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.06879 -38.78687 -34.82380 -34.04883 -32.54718 -32.17414 -29.55895 -27.66809 -26.75052 -23.94214 -22.07027 -21.39107 -20.07024 -18.84839 -17.30617 -16.92847 -15.94173 -15.67945 -15.10910 -14.57012 -14.36520 -14.12344 -13.78071 -13.37135 -13.33969 -13.14295 -12.59489 -11.90554 -11.74860 -11.58735 -10.89534 -10.82809 -10.31240 -10.23698 -10.17405 -9.56154 -9.29814 -9.00335 -8.64136 -8.04582 -7.64135 -6.08200 -4.14306 1.18115 2.09235 2.49455 3.27928 3.30681 3.36296 3.39525 4.24923 4.27315 4.33320 4.38129 4.58363 4.62224 4.66103 4.91747 5.17347 5.27815 5.31950 5.61853 5.90900 5.97898 6.45556 6.59222 6.79343 6.96089 7.44555 7.58962 7.63569 7.79437 7.86532 8.07108 8.77685 8.89256 9.25875 9.52364 11.02230 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.069887 B = 0.003653 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.550370 B = 7662.522773 C = 8042.607748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.468 5.468 3 C 0.181 3.819 4 N -0.473 5.473 5 C 0.016 3.984 6 C -0.008 4.008 7 C -0.181 4.181 8 C 0.528 3.472 9 O -0.568 6.568 10 N -0.707 5.707 11 C 0.248 3.752 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.062 3.938 15 N -0.887 5.887 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.025 4.025 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.207 0.793 25 H 0.140 0.860 26 H 0.128 0.872 27 H 0.392 0.608 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.265 0.735 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.242 7.496 0.074 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.151 5.151 3 C -0.102 4.102 4 N -0.190 5.190 5 C -0.110 4.110 6 C -0.029 4.029 7 C -0.204 4.204 8 C 0.317 3.683 9 O -0.451 6.451 10 N -0.354 5.354 11 C 0.127 3.873 12 C -0.579 4.579 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.525 5.525 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.160 4.160 21 H 0.096 0.904 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.223 0.777 25 H 0.158 0.842 26 H 0.146 0.854 27 H 0.225 0.775 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -23.579 7.024 0.072 24.603 hybrid contribution 0.110 0.581 -0.003 0.592 sum -23.469 7.606 0.069 24.670 Atomic orbital electron populations 1.22061 0.76430 1.04794 1.03682 1.45417 1.07784 1.07070 1.54791 1.25157 0.85397 0.93427 1.06225 1.70646 1.18899 1.11291 1.18205 1.19681 0.92344 0.89823 1.09166 1.21426 0.88897 0.98236 0.94327 1.22172 0.93024 1.00972 1.04189 1.17179 0.84501 0.88184 0.78452 1.90758 1.87802 1.14486 1.52050 1.46429 1.06859 1.10615 1.71457 1.19098 0.79623 0.90868 0.97739 1.21266 0.90674 0.93184 1.52815 0.91870 1.24954 0.99170 0.95167 0.94806 1.69984 1.23456 1.09812 1.49216 0.86415 0.81958 0.80366 0.78171 1.20501 1.21060 1.19730 1.22879 0.90634 0.92798 1.09664 0.90436 0.89551 0.89339 0.77692 0.84225 0.85423 0.77530 0.95476 0.95465 0.92537 0.80144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.23 11.16 59.84 0.67 0.90 16 2 N -0.47 -3.80 3.14 -125.49 -0.39 -4.20 16 3 C 0.18 1.76 12.55 -89.89 -1.13 0.63 16 4 N -0.47 -6.63 10.87 -11.10 -0.12 -6.76 16 5 C 0.02 0.22 6.85 -83.19 -0.57 -0.35 16 6 C -0.01 -0.12 9.62 -37.22 -0.36 -0.48 16 7 C -0.18 -3.26 9.43 -39.33 -0.37 -3.63 16 8 C 0.53 11.80 7.56 -14.92 -0.11 11.69 16 9 O -0.57 -14.64 16.11 5.14 0.08 -14.56 16 10 N -0.71 -16.39 5.54 -64.38 -0.36 -16.75 16 11 C 0.25 6.95 5.43 -5.20 -0.03 6.92 16 12 C -0.54 -15.36 9.28 -34.44 -0.32 -15.68 16 13 H 0.06 1.68 7.60 -52.48 -0.40 1.29 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 16 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 20 C -0.03 -0.26 11.53 -16.21 -0.19 -0.44 16 21 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 22 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 24 H 0.21 1.15 8.06 -52.49 -0.42 0.73 16 25 H 0.14 2.16 7.45 -52.49 -0.39 1.77 16 26 H 0.13 2.14 7.75 -52.49 -0.41 1.74 16 27 H 0.39 7.95 8.28 -40.82 -0.34 7.62 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 284.88 15.07 4.29 4.29 Total: -1.00 -36.65 284.88 -6.91 -43.56 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -3.63 Total: 2.84 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.50 Total: 1.26 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.14 Total: -53.90 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -36.65 -6.91 -43.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694610.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.259 kcal (2) G-P(sol) polarization free energy of solvation -36.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds