Wall clock time and date at job start Sun Mar 29 2020 22:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35860 * 126.17632 * 2 1 4 4 N 1.30173 * 109.10724 * 179.97438 * 3 2 1 5 5 C 1.35802 * 109.02041 * 359.97438 * 4 3 2 6 6 C 1.46780 * 126.24620 * 179.97438 * 5 4 3 7 7 C 1.35178 * 120.00333 * 0.02589 * 6 5 4 8 8 C 1.41752 * 120.00141 * 179.97438 * 7 6 5 9 9 O 1.21753 * 119.99917 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99970 * 179.72973 * 8 7 6 11 11 C 1.46490 * 120.00004 * 180.27908 * 10 8 7 12 12 C 1.50702 * 109.47610 * 179.97438 * 11 10 8 13 13 H 1.08010 * 119.99188 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00564 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99836 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00096 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46973 * 90.00363 * 16 14 12 18 18 H 1.48497 * 109.46950 * 210.00146 * 16 14 12 19 19 H 1.48500 * 109.47089 * 330.00542 * 16 14 12 20 20 C 1.36055 * 126.17890 * 180.25806 * 2 1 3 21 21 H 1.08997 * 109.47012 * 89.97865 * 1 2 3 22 22 H 1.09003 * 109.46896 * 209.98157 * 1 2 3 23 23 H 1.08995 * 109.47483 * 329.97840 * 1 2 3 24 24 H 1.07993 * 125.44533 * 359.95804 * 3 2 1 25 25 H 1.08001 * 119.99534 * 180.02562 * 6 5 4 26 26 H 1.08002 * 119.99603 * 0.02562 * 7 6 5 27 27 H 0.97000 * 119.99736 * 0.27176 * 10 8 7 28 28 H 1.08999 * 109.47361 * 299.99585 * 11 10 8 29 29 H 1.09003 * 109.47771 * 59.99365 * 11 10 8 30 30 H 0.97000 * 119.99613 * 180.02562 * 15 14 12 31 31 H 1.07996 * 126.64157 * 0.02883 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0967 0.0000 4 7 3.5113 0.7146 0.0006 5 6 3.5575 -0.6427 0.0015 6 6 4.7702 -1.4697 0.0018 7 6 5.9882 -0.8834 0.0017 8 6 7.1593 -1.6822 0.0025 9 8 7.0680 -2.8963 0.0029 10 7 8.3736 -1.0977 -0.0031 11 6 9.5838 -1.9231 -0.0084 12 6 10.7995 -1.0325 -0.0148 13 1 10.6822 0.0412 -0.0145 14 6 12.0613 -1.5881 -0.0200 15 7 12.2040 -2.8955 -0.0198 16 14 13.5681 -0.4840 -0.0271 17 1 13.9734 -0.1908 1.3710 18 1 14.6809 -1.1699 -0.7316 19 1 13.2476 0.7862 -0.7264 20 6 2.2681 -1.0982 -0.0049 21 1 -0.3633 0.0004 -1.0276 22 1 -0.3633 -0.8902 0.5136 23 1 -0.3634 0.8897 0.5141 24 1 1.9264 2.1215 -0.0006 25 1 4.6892 -2.5467 0.0022 26 1 6.0691 0.1935 0.0017 27 1 8.4463 -0.1304 -0.0038 28 1 9.5986 -2.5521 0.8817 29 1 9.5905 -2.5527 -0.8982 30 1 13.0917 -3.2864 -0.0231 31 1 1.9491 -2.1300 -0.0100 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935694610.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:52 Heat of formation + Delta-G solvation = 10.384240 kcal Electronic energy + Delta-G solvation = -15042.035960 eV Core-core repulsion = 12323.773521 eV Total energy + Delta-G solvation = -2718.262439 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.85951 -40.60990 -36.24120 -35.57063 -34.34426 -33.64355 -30.61047 -29.33363 -27.67222 -25.54578 -23.78572 -22.20078 -21.50639 -20.28729 -18.80822 -18.13105 -17.42863 -16.97806 -16.56093 -16.15778 -16.04895 -15.35188 -14.88306 -14.71549 -14.09818 -14.00913 -13.96563 -13.77487 -13.39279 -12.97609 -12.87618 -12.71136 -12.22016 -11.48493 -11.31964 -11.05086 -10.87711 -10.79942 -10.46780 -9.83946 -8.95322 -8.28672 -6.45496 -0.05908 1.25069 1.42844 1.46189 1.57611 1.91908 2.13181 2.35416 2.71894 2.75881 3.05769 3.55593 3.87581 4.07794 4.20529 4.28794 4.46210 4.51143 4.58247 4.79459 5.06708 5.16485 5.24452 5.34444 5.40967 5.50341 5.67885 5.75704 5.85336 6.26868 6.64868 6.92937 7.04811 7.23218 7.49148 8.83960 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.069887 B = 0.003653 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.550370 B = 7662.522773 C = 8042.607748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.461 5.461 3 C 0.187 3.813 4 N -0.519 5.519 5 C -0.042 4.042 6 C 0.037 3.963 7 C -0.221 4.221 8 C 0.532 3.468 9 O -0.613 6.613 10 N -0.706 5.706 11 C 0.265 3.735 12 C -0.559 4.559 13 H 0.081 0.919 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.988 3.012 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.257 1.257 20 C 0.008 3.992 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.111 0.889 24 H 0.244 0.756 25 H 0.140 0.860 26 H 0.138 0.862 27 H 0.407 0.593 28 H -0.011 1.011 29 H -0.011 1.011 30 H 0.270 0.730 31 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.609 9.618 0.090 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.142 5.142 3 C -0.096 4.096 4 N -0.237 5.237 5 C -0.167 4.167 6 C 0.015 3.985 7 C -0.243 4.243 8 C 0.324 3.676 9 O -0.499 6.499 10 N -0.354 5.354 11 C 0.142 3.858 12 C -0.596 4.596 13 H 0.099 0.901 14 C -0.197 4.197 15 N -0.569 5.569 16 Si 0.811 3.189 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.181 1.181 20 C -0.131 4.131 21 H 0.110 0.890 22 H 0.120 0.880 23 H 0.130 0.870 24 H 0.260 0.740 25 H 0.157 0.843 26 H 0.156 0.844 27 H 0.242 0.758 28 H 0.007 0.993 29 H 0.007 0.993 30 H 0.078 0.922 31 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -26.001 9.195 0.087 27.579 hybrid contribution 0.485 -0.112 -0.008 0.498 sum -25.516 9.083 0.079 27.085 Atomic orbital electron populations 1.22469 0.73007 1.06813 1.05268 1.45775 1.09723 1.05927 1.52730 1.25878 0.84500 0.95218 1.04052 1.70544 1.21691 1.11522 1.19946 1.19579 0.92767 0.90313 1.14008 1.21643 0.89403 0.98605 0.88800 1.21738 0.91691 1.00752 1.10168 1.17800 0.85215 0.87949 0.76607 1.90716 1.88355 1.16517 1.54331 1.46178 1.05941 1.10960 1.72326 1.18568 0.82139 0.90881 0.94170 1.21626 0.90920 0.94015 1.53074 0.90056 1.26101 1.03026 0.96789 0.93736 1.70145 1.24655 1.12227 1.49916 0.85112 0.76808 0.78345 0.78667 1.19466 1.20632 1.18054 1.23337 0.89630 0.94628 1.05470 0.88993 0.88013 0.87037 0.74003 0.84261 0.84447 0.75783 0.99310 0.99298 0.92158 0.77075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.10 11.16 127.77 1.43 1.52 16 2 N -0.46 -5.67 3.14 -550.93 -1.73 -7.41 16 3 C 0.19 3.06 12.55 180.09 2.26 5.32 16 4 N -0.52 -13.83 10.87 -189.03 -2.05 -15.88 16 5 C -0.04 -1.12 6.85 40.42 0.28 -0.84 16 6 C 0.04 1.18 9.62 23.80 0.23 1.41 16 7 C -0.22 -8.25 9.43 22.43 0.21 -8.04 16 8 C 0.53 25.10 7.56 85.11 0.64 25.75 16 9 O -0.61 -33.54 16.11 -4.52 -0.07 -33.62 16 10 N -0.71 -34.46 5.54 -475.78 -2.63 -37.09 16 11 C 0.27 15.79 5.43 85.64 0.46 16.26 16 12 C -0.56 -32.47 9.28 25.60 0.24 -32.24 16 13 H 0.08 4.32 7.60 -2.91 -0.02 4.30 16 14 C 0.00 0.17 5.46 84.65 0.46 0.63 16 15 N -0.93 -58.29 13.29 21.44 0.28 -58.00 16 16 Si 0.99 44.23 29.54 68.60 2.03 46.25 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 20 C 0.01 0.13 11.53 83.69 0.96 1.10 16 21 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 22 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 23 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 24 H 0.24 1.72 8.06 -2.91 -0.02 1.70 16 25 H 0.14 4.38 7.45 -2.91 -0.02 4.35 16 26 H 0.14 4.78 7.75 -2.91 -0.02 4.75 16 27 H 0.41 17.09 8.28 -92.71 -0.77 16.33 16 28 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -84.27 284.88 3.37 -80.90 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.37 Total: 13.98 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 7.18 Total: 10.87 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -6.14 Total: -118.39 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.07 Total: -33.62 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -84.27 3.37 -80.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694610.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.289 kcal (2) G-P(sol) polarization free energy of solvation -84.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds