Wall clock time and date at job start Sun Mar 29 2020 22:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.37098 * 119.99947 * 2 1 4 4 H 1.07998 * 119.99574 * 204.39679 * 3 2 1 5 5 C 1.38944 * 120.00063 * 24.39406 * 3 2 1 6 6 N 1.31409 * 120.00187 * 12.63908 * 5 3 2 7 7 Si 1.86800 * 120.00172 * 192.63997 * 5 3 2 8 8 H 1.48494 * 109.47206 * 89.99531 * 7 5 3 9 9 H 1.48498 * 109.47453 * 210.00121 * 7 5 3 10 10 H 1.48505 * 109.46871 * 329.99783 * 7 5 3 11 11 C 1.34771 * 119.99742 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00018 * 180.02562 * 11 2 1 13 13 C 1.50700 * 120.00151 * 359.97438 * 11 2 1 14 14 C 1.53007 * 109.47171 * 180.02562 * 13 11 2 15 15 C 1.50700 * 109.47171 * 179.97438 * 14 13 11 16 16 C 1.38391 * 119.99744 * 124.99586 * 15 14 13 17 17 N 1.32126 * 119.99669 * 180.02562 * 16 15 14 18 18 C 1.32156 * 119.99957 * 0.02562 * 17 16 15 19 19 C 1.38344 * 120.00199 * 0.24384 * 18 17 16 20 20 N 1.32126 * 120.00261 * 305.02289 * 15 14 13 21 21 H 1.08993 * 109.47294 * 265.86265 * 1 2 3 22 22 H 1.08996 * 109.46996 * 25.86333 * 1 2 3 23 23 H 1.08999 * 109.46751 * 145.85893 * 1 2 3 24 24 H 0.96998 * 120.00546 * 180.02562 * 6 5 3 25 25 H 1.08998 * 109.47379 * 60.00770 * 13 11 2 26 26 H 1.09000 * 109.47531 * 300.00306 * 13 11 2 27 27 H 1.08995 * 109.47125 * 59.99644 * 14 13 11 28 28 H 1.09000 * 109.46792 * 300.00329 * 14 13 11 29 29 H 1.08000 * 120.00403 * 0.04624 * 16 15 14 30 30 H 1.07995 * 119.99884 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.00101 * 179.72230 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1582 1.2290 -0.3863 5 6 1.5489 2.3369 0.4970 6 7 0.4347 2.2491 1.1881 7 14 2.3238 4.0073 0.1827 8 1 1.7871 4.5719 -1.0815 9 1 2.0035 4.9213 1.3084 10 1 3.7970 3.8564 0.0714 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6353 -0.0005 15 6 1.6261 -4.9404 0.0001 16 6 1.8751 -5.8835 -0.9815 17 7 1.2141 -7.0276 -0.9812 18 6 0.3148 -7.2709 -0.0439 19 6 0.0619 -6.3257 0.9342 20 7 0.7274 -5.1839 0.9375 21 1 -0.3633 -0.0741 1.0249 22 1 -0.3633 0.9247 -0.4483 23 1 -0.3633 -0.8506 -0.5768 24 1 0.0144 3.0517 1.5347 25 1 0.7585 -2.5299 -0.8903 26 1 0.7590 -2.5302 0.8896 27 1 3.0063 -3.5775 0.8894 28 1 3.0063 -3.5775 -0.8905 29 1 2.6099 -5.6847 -1.7476 30 1 -0.2258 -8.2058 -0.0439 31 1 -0.6761 -6.5227 1.6975 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116878935.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:00 Heat of formation + Delta-G solvation = 13.754044 kcal Electronic energy + Delta-G solvation = -15845.838133 eV Core-core repulsion = 13127.721820 eV Total energy + Delta-G solvation = -2718.116313 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.07982 -38.44842 -35.03058 -34.45865 -33.28097 -31.61617 -30.09311 -26.51675 -25.58798 -24.58801 -23.90295 -21.82698 -18.69442 -17.52491 -17.01857 -16.83284 -16.30570 -15.39348 -15.02270 -14.70207 -14.36487 -13.98776 -13.47957 -12.98585 -12.59792 -12.22344 -11.64730 -11.62537 -11.53066 -11.29351 -11.22854 -11.10416 -10.82376 -10.65768 -10.33026 -10.21028 -9.23067 -9.05062 -8.97761 -8.34943 -7.62856 -6.29263 -3.85785 0.74579 1.11385 3.18311 3.26812 3.32366 3.66464 3.94093 4.03629 4.17082 4.24524 4.44918 4.72784 4.97955 5.14066 5.17240 5.31119 5.41645 5.60488 5.69724 5.91432 6.09406 6.31989 6.40935 6.46331 6.54031 6.88766 7.22828 7.25016 7.59468 7.77443 8.17752 8.51891 9.21910 9.46314 10.02366 10.75808 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.060673 B = 0.004922 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.381849 B = 5686.876322 C = 5973.618892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.447 5.447 3 C -0.307 4.307 4 H 0.098 0.902 5 C 0.030 3.970 6 N -0.883 5.883 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.447 3.553 12 O -0.593 6.593 13 C -0.119 4.119 14 C -0.049 4.049 15 C 0.096 3.904 16 C 0.048 3.952 17 N -0.439 5.439 18 C 0.030 3.970 19 C 0.054 3.946 20 N -0.435 5.435 21 H 0.052 0.948 22 H 0.073 0.927 23 H 0.025 0.975 24 H 0.267 0.733 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.170 0.830 30 H 0.166 0.834 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.694 -13.496 -2.105 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.166 5.166 3 C -0.435 4.435 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.522 5.522 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.236 3.764 12 O -0.478 6.478 13 C -0.160 4.160 14 C -0.088 4.088 15 C -0.044 4.044 16 C -0.112 4.112 17 N -0.153 5.153 18 C -0.130 4.130 19 C -0.106 4.106 20 N -0.150 5.150 21 H 0.070 0.930 22 H 0.092 0.908 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.187 0.813 30 H 0.183 0.817 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.247 -13.340 -2.011 13.876 hybrid contribution -0.076 0.820 0.036 0.824 sum -3.323 -12.520 -1.975 13.103 Atomic orbital electron populations 1.21464 0.81296 0.99759 1.00609 1.43579 1.05453 1.04827 1.62745 1.19657 1.00601 0.84239 1.38979 0.88451 1.25344 0.96660 1.00122 0.95183 1.69996 1.19288 1.29552 1.33402 0.85933 0.79662 0.81358 0.77794 1.20417 1.20977 1.19360 1.20047 0.88015 0.84903 0.83478 1.90504 1.13999 1.87277 1.56047 1.21429 0.98384 0.92942 1.03272 1.20287 0.96487 0.87087 1.04961 1.22600 0.93381 0.97684 0.90759 1.23685 0.98878 0.89862 0.98755 1.68421 1.04804 1.19519 1.22606 1.23689 0.96273 1.00800 0.92194 1.23804 0.98155 0.90072 0.98567 1.68348 1.04668 1.19334 1.22676 0.92982 0.90820 0.95682 0.92297 0.90909 0.89346 0.88844 0.89236 0.81297 0.81701 0.81525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.56 8.44 59.85 0.51 3.06 16 2 N -0.45 -11.63 3.01 -122.20 -0.37 -12.00 16 3 C -0.31 -8.66 9.24 -14.94 -0.14 -8.80 16 4 H 0.10 2.86 7.45 -52.49 -0.39 2.47 16 5 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 6 N -0.88 -23.90 10.83 55.50 0.60 -23.30 16 7 Si 0.93 20.92 29.57 -169.99 -5.03 15.89 16 8 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 C 0.45 10.90 7.63 -10.99 -0.08 10.81 16 12 O -0.59 -16.22 15.69 5.55 0.09 -16.13 16 13 C -0.12 -2.21 4.17 -27.88 -0.12 -2.33 16 14 C -0.05 -0.79 4.92 -27.88 -0.14 -0.93 16 15 C 0.10 1.36 6.18 -82.41 -0.51 0.85 16 16 C 0.05 0.61 10.85 -17.37 -0.19 0.42 16 17 N -0.44 -5.50 10.50 -13.06 -0.14 -5.64 16 18 C 0.03 0.31 11.22 -17.37 -0.20 0.11 16 19 C 0.05 0.59 11.22 -17.37 -0.20 0.39 16 20 N -0.43 -6.22 10.05 -9.29 -0.09 -6.31 16 21 H 0.05 1.22 7.83 -51.93 -0.41 0.81 16 22 H 0.07 1.76 6.80 -51.93 -0.35 1.41 16 23 H 0.02 0.47 6.61 -51.93 -0.34 0.13 16 24 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.07 1.23 7.41 -51.93 -0.38 0.85 16 26 H 0.09 1.64 7.93 -51.93 -0.41 1.23 16 27 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 28 H 0.09 1.35 7.85 -51.93 -0.41 0.95 16 29 H 0.17 1.72 7.96 -52.49 -0.42 1.31 16 30 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 272.24 15.07 4.10 4.10 Total: -1.00 -32.65 272.24 -5.50 -38.15 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.52 Total: 0.93 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.15 Total: 4.31 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.00 Total: -47.25 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.65 -5.50 -38.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116878935.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.902 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds