Wall clock time and date at job start Sun Mar 29 2020 22:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.37098 * 119.99947 * 2 1 4 4 H 1.07998 * 119.99574 * 204.39679 * 3 2 1 5 5 C 1.38944 * 120.00063 * 24.39406 * 3 2 1 6 6 N 1.31409 * 120.00187 * 12.63908 * 5 3 2 7 7 Si 1.86800 * 120.00172 * 192.63997 * 5 3 2 8 8 H 1.48494 * 109.47206 * 89.99531 * 7 5 3 9 9 H 1.48498 * 109.47453 * 210.00121 * 7 5 3 10 10 H 1.48505 * 109.46871 * 329.99783 * 7 5 3 11 11 C 1.34771 * 119.99742 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00018 * 180.02562 * 11 2 1 13 13 C 1.50700 * 120.00151 * 359.97438 * 11 2 1 14 14 C 1.53007 * 109.47171 * 180.02562 * 13 11 2 15 15 C 1.50700 * 109.47171 * 179.97438 * 14 13 11 16 16 C 1.38391 * 119.99744 * 124.99586 * 15 14 13 17 17 N 1.32126 * 119.99669 * 180.02562 * 16 15 14 18 18 C 1.32156 * 119.99957 * 0.02562 * 17 16 15 19 19 C 1.38344 * 120.00199 * 0.24384 * 18 17 16 20 20 N 1.32126 * 120.00261 * 305.02289 * 15 14 13 21 21 H 1.08993 * 109.47294 * 265.86265 * 1 2 3 22 22 H 1.08996 * 109.46996 * 25.86333 * 1 2 3 23 23 H 1.08999 * 109.46751 * 145.85893 * 1 2 3 24 24 H 0.96998 * 120.00546 * 180.02562 * 6 5 3 25 25 H 1.08998 * 109.47379 * 60.00770 * 13 11 2 26 26 H 1.09000 * 109.47531 * 300.00306 * 13 11 2 27 27 H 1.08995 * 109.47125 * 59.99644 * 14 13 11 28 28 H 1.09000 * 109.46792 * 300.00329 * 14 13 11 29 29 H 1.08000 * 120.00403 * 0.04624 * 16 15 14 30 30 H 1.07995 * 119.99884 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.00101 * 179.72230 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1582 1.2290 -0.3863 5 6 1.5489 2.3369 0.4970 6 7 0.4347 2.2491 1.1881 7 14 2.3238 4.0073 0.1827 8 1 1.7871 4.5719 -1.0815 9 1 2.0035 4.9213 1.3084 10 1 3.7970 3.8564 0.0714 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6353 -0.0005 15 6 1.6261 -4.9404 0.0001 16 6 1.8751 -5.8835 -0.9815 17 7 1.2141 -7.0276 -0.9812 18 6 0.3148 -7.2709 -0.0439 19 6 0.0619 -6.3257 0.9342 20 7 0.7274 -5.1839 0.9375 21 1 -0.3633 -0.0741 1.0249 22 1 -0.3633 0.9247 -0.4483 23 1 -0.3633 -0.8506 -0.5768 24 1 0.0144 3.0517 1.5347 25 1 0.7585 -2.5299 -0.8903 26 1 0.7590 -2.5302 0.8896 27 1 3.0063 -3.5775 0.8894 28 1 3.0063 -3.5775 -0.8905 29 1 2.6099 -5.6847 -1.7476 30 1 -0.2258 -8.2058 -0.0439 31 1 -0.6761 -6.5227 1.6975 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116878935.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:59 Heat of formation + Delta-G solvation = -8.931223 kcal Electronic energy + Delta-G solvation = -15846.821840 eV Core-core repulsion = 13127.721820 eV Total energy + Delta-G solvation = -2719.100020 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.01386 -40.35168 -36.79375 -35.77082 -34.41387 -33.61895 -31.32655 -28.34085 -27.13432 -25.83952 -25.27042 -23.07367 -20.49904 -18.89592 -18.49379 -18.08868 -17.69872 -16.81868 -16.51852 -16.19622 -15.92713 -15.64392 -14.60049 -14.56080 -14.15645 -13.52557 -13.37124 -13.29900 -13.07259 -12.92035 -12.62890 -12.52976 -12.32019 -12.24876 -12.12859 -11.92675 -10.99750 -10.39994 -10.10332 -9.96856 -9.66636 -8.33628 -5.99205 -0.14475 0.19254 1.38257 1.41414 1.53998 2.03816 2.28626 2.74781 3.01228 3.09361 3.22065 3.40772 3.58336 3.84470 4.08030 4.16331 4.27008 4.43854 4.51888 4.58730 4.65521 4.79173 4.97855 5.08272 5.13542 5.35257 5.45081 5.49263 6.11207 6.35932 6.48738 6.87122 7.17004 7.47862 8.03853 8.69843 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.060673 B = 0.004922 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.381849 B = 5686.876322 C = 5973.618892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.466 5.466 3 C -0.346 4.346 4 H 0.072 0.928 5 C -0.004 4.004 6 N -0.899 5.899 7 Si 0.991 3.009 8 H -0.264 1.264 9 H -0.274 1.274 10 H -0.275 1.275 11 C 0.438 3.562 12 O -0.631 6.631 13 C -0.102 4.102 14 C -0.040 4.040 15 C 0.078 3.922 16 C 0.047 3.953 17 N -0.458 5.458 18 C 0.044 3.956 19 C 0.054 3.946 20 N -0.465 5.465 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.273 0.727 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.185 0.815 30 H 0.206 0.794 31 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 -14.684 -2.366 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.185 5.185 3 C -0.474 4.474 4 H 0.090 0.910 5 C -0.205 4.205 6 N -0.538 5.538 7 Si 0.814 3.186 8 H -0.189 1.189 9 H -0.199 1.199 10 H -0.200 1.200 11 C 0.228 3.772 12 O -0.519 6.519 13 C -0.142 4.142 14 C -0.079 4.079 15 C -0.061 4.061 16 C -0.112 4.112 17 N -0.172 5.172 18 C -0.116 4.116 19 C -0.107 4.107 20 N -0.181 5.181 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.202 0.798 30 H 0.223 0.777 31 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.622 -14.527 -2.284 15.415 hybrid contribution 0.283 1.071 0.173 1.121 sum -4.339 -13.456 -2.111 14.295 Atomic orbital electron populations 1.21399 0.79550 1.00625 1.00437 1.43874 1.06699 1.04845 1.63037 1.19645 1.00469 0.86207 1.41079 0.90980 1.26116 0.97053 1.03060 0.94284 1.70069 1.19839 1.30757 1.33088 0.84976 0.78323 0.76927 0.78373 1.18933 1.19916 1.20010 1.21057 0.87980 0.86376 0.81823 1.90465 1.15967 1.88131 1.57346 1.21298 0.98405 0.90346 1.04195 1.20085 0.95972 0.87591 1.04254 1.22195 0.94525 0.97252 0.92164 1.23848 0.99107 0.89607 0.98597 1.68516 1.05689 1.19322 1.23680 1.24383 0.94839 1.01795 0.90627 1.24407 0.97968 0.88934 0.99390 1.68265 1.05375 1.21332 1.23129 0.94054 0.92407 0.91741 0.91721 0.88735 0.89183 0.90935 0.88819 0.79762 0.77710 0.78127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.56 8.44 127.77 1.08 6.64 16 2 N -0.47 -24.67 3.01 -658.90 -1.98 -26.65 16 3 C -0.35 -20.07 9.24 84.04 0.78 -19.30 16 4 H 0.07 4.44 7.45 -2.91 -0.02 4.42 16 5 C 0.00 -0.19 5.04 84.93 0.43 0.23 16 6 N -0.90 -48.65 10.83 21.66 0.23 -48.41 16 7 Si 0.99 42.99 29.57 68.60 2.03 45.02 16 8 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 C 0.44 21.74 7.63 87.66 0.67 22.41 16 12 O -0.63 -35.78 15.69 -3.06 -0.05 -35.83 16 13 C -0.10 -3.73 4.17 29.85 0.12 -3.61 16 14 C -0.04 -1.29 4.92 29.85 0.15 -1.14 16 15 C 0.08 2.12 6.18 42.55 0.26 2.38 16 16 C 0.05 1.11 10.85 84.68 0.92 2.03 16 17 N -0.46 -10.30 10.50 -195.22 -2.05 -12.35 16 18 C 0.04 0.74 11.22 84.67 0.95 1.69 16 19 C 0.05 1.00 11.22 84.67 0.95 1.95 16 20 N -0.47 -12.52 10.05 -183.29 -1.84 -14.36 16 21 H 0.04 1.93 7.83 -2.39 -0.02 1.91 16 22 H 0.06 2.76 6.80 -2.39 -0.02 2.74 16 23 H 0.06 2.35 6.61 -2.39 -0.02 2.33 16 24 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 25 H 0.09 3.04 7.41 -2.39 -0.02 3.02 16 26 H 0.09 3.29 7.93 -2.39 -0.02 3.27 16 27 H 0.07 2.59 8.10 -2.39 -0.02 2.57 16 28 H 0.09 2.86 7.85 -2.39 -0.02 2.84 16 29 H 0.19 3.53 7.96 -2.91 -0.02 3.50 16 30 H 0.21 1.69 8.06 -2.91 -0.02 1.66 16 31 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -71.87 272.24 3.78 -68.09 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 1.13 Total: 11.20 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 6.31 Total: 13.29 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -5.64 Total: -101.77 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.05 Total: -35.83 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -71.87 3.78 -68.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116878935.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.156 kcal (2) G-P(sol) polarization free energy of solvation -71.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds