Wall clock time and date at job start Sun Mar 29 2020 21:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31806 * 119.12472 * 2 1 4 4 C 1.32318 * 120.81865 * 180.02562 * 3 2 1 5 5 C 1.38624 * 119.10205 * 0.02562 * 4 3 2 6 6 C 1.38578 * 118.39971 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.44586 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47055 * 124.99629 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 O 1.21295 * 119.99584 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 180.02562 * 9 8 7 12 12 C 1.37095 * 119.99737 * 180.02562 * 11 9 8 13 13 H 1.08004 * 120.00254 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99943 * 179.97438 * 12 11 9 15 15 N 1.31414 * 120.00135 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 119.99954 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47152 * 89.99894 * 16 14 12 18 18 H 1.48501 * 109.47252 * 209.99373 * 16 14 12 19 19 H 1.48500 * 109.47362 * 329.99455 * 16 14 12 20 20 N 1.31784 * 119.11978 * 180.29616 * 2 1 3 21 21 H 1.09003 * 109.46869 * 89.99926 * 1 2 3 22 22 H 1.08995 * 109.46909 * 209.99938 * 1 2 3 23 23 H 1.09001 * 109.46565 * 330.00260 * 1 2 3 24 24 H 1.08005 * 120.44992 * 180.02562 * 4 3 2 25 25 H 1.08004 * 120.79656 * 179.97438 * 5 4 3 26 26 H 1.09001 * 109.47328 * 4.99899 * 7 6 5 27 27 H 1.09004 * 109.47043 * 244.99709 * 7 6 5 28 28 H 1.09001 * 109.46832 * 59.99966 * 8 7 6 29 29 H 1.09000 * 109.47611 * 300.00263 * 8 7 6 30 30 H 0.96994 * 119.99756 * 0.02562 * 11 9 8 31 31 H 0.96994 * 120.00084 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1486 1.1514 0.0000 4 6 3.4712 1.1905 -0.0005 5 6 4.1809 -0.0003 -0.0016 6 6 3.4712 -1.1905 -0.0026 7 6 4.1961 -2.5117 -0.0032 8 6 3.7156 -3.3575 1.1777 9 6 4.4400 -4.6791 1.1767 10 8 5.2602 -4.9204 0.3164 11 7 4.1764 -5.5927 2.1318 12 6 4.8358 -6.7947 2.1312 13 1 5.5668 -7.0093 1.3656 14 6 4.5645 -7.7364 3.1162 15 7 5.1961 -8.8888 3.1154 16 14 3.3007 -7.3650 4.4407 17 1 1.9610 -7.8181 3.9876 18 1 3.6683 -8.0791 5.6898 19 1 3.2681 -5.9028 4.6978 20 7 2.1484 -1.1513 -0.0060 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3632 0.8900 0.5138 24 1 3.9908 2.1374 -0.0001 25 1 5.2609 -0.0003 -0.0024 26 1 5.2684 -2.3380 0.0868 27 1 3.9903 -3.0386 -0.9351 28 1 2.6433 -3.5313 1.0876 29 1 3.9212 -2.8307 2.1095 30 1 3.5202 -5.3998 2.8196 31 1 5.0070 -9.5461 3.8031 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117708195.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:24 Heat of formation + Delta-G solvation = 0.055456 kcal Electronic energy + Delta-G solvation = -15537.622287 eV Core-core repulsion = 12818.911958 eV Total energy + Delta-G solvation = -2718.710329 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.14903 -38.45150 -35.08306 -33.95905 -33.48529 -31.73194 -31.14054 -28.63698 -26.31697 -24.25614 -23.02876 -21.58418 -19.31686 -18.25806 -17.60745 -16.53186 -15.65618 -15.37776 -15.18020 -14.87025 -14.75757 -13.68654 -13.45229 -13.04578 -12.96696 -12.60492 -12.53159 -12.48480 -11.86537 -11.75168 -11.25373 -11.03826 -10.83626 -10.58722 -10.45910 -9.98155 -9.58708 -9.46058 -9.26378 -8.55149 -8.19221 -6.32075 -3.83459 0.82203 0.99926 3.03526 3.07959 3.15570 3.63523 3.73971 3.82426 3.99868 4.10140 4.31312 4.76695 4.93203 5.00540 5.20114 5.24280 5.32911 5.36924 5.43189 5.47969 5.69225 5.76922 5.90563 6.10842 6.26834 6.28994 6.41775 6.97237 7.56033 8.04491 8.13789 8.57677 8.93392 9.42018 9.81028 10.80979 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037990 B = 0.005028 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.851609 B = 5567.546745 C = 6032.824766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.316 3.684 3 N -0.531 5.531 4 C 0.149 3.851 5 C -0.234 4.234 6 C 0.191 3.809 7 C -0.053 4.053 8 C -0.124 4.124 9 C 0.450 3.550 10 O -0.581 6.581 11 N -0.588 5.588 12 C -0.307 4.307 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.881 5.881 16 Si 0.879 3.121 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.269 1.269 20 N -0.516 5.516 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.167 0.833 25 H 0.149 0.851 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.372 0.628 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.361 18.443 -2.617 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.247 5.247 4 C -0.016 4.016 5 C -0.256 4.256 6 C 0.045 3.955 7 C -0.091 4.091 8 C -0.165 4.165 9 C 0.237 3.763 10 O -0.465 6.465 11 N -0.226 5.226 12 C -0.436 4.436 13 H 0.138 0.862 14 C -0.161 4.161 15 N -0.521 5.521 16 Si 0.705 3.295 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.195 1.195 20 N -0.231 5.231 21 H 0.103 0.897 22 H 0.105 0.895 23 H 0.102 0.898 24 H 0.184 0.816 25 H 0.166 0.834 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.205 0.795 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.763 18.050 -3.094 19.891 hybrid contribution 0.083 0.167 1.190 1.205 sum -7.679 18.218 -1.904 19.862 Atomic orbital electron populations 1.20557 0.85853 1.04101 1.03787 1.23280 0.98177 0.83454 0.90254 1.68232 1.10208 1.30580 1.15638 1.23192 0.89711 0.98560 0.90157 1.22825 1.03134 0.94129 1.05513 1.21993 0.89446 0.96336 0.87761 1.20353 0.99079 0.89081 1.00620 1.21410 1.01750 0.94926 0.98397 1.19780 0.86526 0.85816 0.84211 1.90553 1.37276 1.79805 1.38848 1.42237 1.38259 1.15980 1.26126 1.19461 1.20780 0.89715 1.13630 0.86248 1.25044 0.97801 0.95380 0.97858 1.69622 1.41336 1.06349 1.34748 0.86679 0.82077 0.78546 0.82173 1.19516 1.20145 1.19467 1.68129 1.09810 1.30325 1.14817 0.89736 0.89516 0.89809 0.81617 0.83366 0.88979 0.88451 0.89207 0.90623 0.79545 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.32 36.01 0.37 -0.41 16 2 C 0.32 4.04 7.64 -157.19 -1.20 2.84 16 3 N -0.53 -6.59 10.33 -10.72 -0.11 -6.70 16 4 C 0.15 1.56 11.31 -17.20 -0.19 1.36 16 5 C -0.23 -2.59 9.80 -39.31 -0.39 -2.97 16 6 C 0.19 2.60 6.20 -82.25 -0.51 2.09 16 7 C -0.05 -0.80 4.94 -27.89 -0.14 -0.93 16 8 C -0.12 -2.08 5.57 -27.88 -0.16 -2.23 16 9 C 0.45 10.21 7.78 -10.98 -0.09 10.12 16 10 O -0.58 -15.34 15.56 5.54 0.09 -15.25 16 11 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 12 C -0.31 -8.74 10.16 -14.93 -0.15 -8.89 16 13 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 14 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 15 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 16 Si 0.88 19.54 27.74 -169.99 -4.71 14.83 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 20 N -0.52 -7.38 9.94 -6.99 -0.07 -7.45 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.17 1.12 8.06 -52.48 -0.42 0.69 16 25 H 0.15 1.26 8.01 -52.48 -0.42 0.84 16 26 H 0.09 1.33 7.90 -51.93 -0.41 0.92 16 27 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 28 H 0.09 1.44 7.98 -51.93 -0.41 1.02 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.37 7.94 5.76 -40.82 -0.24 7.71 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 276.65 15.07 4.17 4.17 Total: -1.00 -33.53 276.65 -6.04 -39.56 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.57 Total: 8.06 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.55 Total: 2.03 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.54 Total: -53.40 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.09 Total: -15.25 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.53 -6.04 -39.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117708195.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.618 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds