Wall clock time and date at job start Sun Mar 29 2020 22:16:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 N 1.28440 * 125.19448 * 2 1
4 4 C 1.30883 * 110.95276 * 179.74973 * 3 2 1
5 5 C 1.39640 * 107.87657 * 0.45390 * 4 3 2
6 6 C 1.50701 * 127.32572 * 179.82994 * 5 4 3
7 7 C 1.52998 * 117.49595 * 351.05970 * 6 5 4
8 8 C 1.53001 * 60.00111 * 107.49307 * 7 6 5
9 9 C 1.36649 * 125.19563 * 180.02562 * 2 1 3
10 10 C 1.47027 * 126.89525 * 359.96460 * 9 2 1
11 11 O 1.21665 * 119.99788 * 92.09322 * 10 9 2
12 12 N 1.34775 * 119.99448 * 272.09422 * 10 9 2
13 13 C 1.36844 * 119.99438 * 185.32751 * 12 10 9
14 14 H 1.07995 * 120.00235 * 0.02562 * 13 12 10
15 15 C 1.39052 * 119.99824 * 180.02562 * 13 12 10
16 16 N 1.31365 * 119.99938 * 180.02562 * 15 13 12
17 17 Si 1.86799 * 120.00043 * 359.97438 * 15 13 12
18 18 H 1.48491 * 109.47298 * 90.00043 * 17 15 13
19 19 H 1.48504 * 109.46913 * 210.00178 * 17 15 13
20 20 H 1.48505 * 109.47239 * 329.99904 * 17 15 13
21 21 H 1.08998 * 109.47122 * 274.77832 * 1 2 3
22 22 H 1.08994 * 109.47318 * 34.77949 * 1 2 3
23 23 H 1.09003 * 109.46654 * 154.77927 * 1 2 3
24 24 H 1.08003 * 126.06425 * 180.28362 * 4 3 2
25 25 H 1.09002 * 115.56421 * 205.37371 * 6 5 4
26 26 H 1.09002 * 117.49877 * 214.97665 * 7 6 5
27 27 H 1.08998 * 117.50137 * 0.02562 * 7 6 5
28 28 H 1.09005 * 117.49644 * 252.51542 * 8 7 6
29 29 H 1.08997 * 117.50615 * 107.49008 * 8 7 6
30 30 H 0.96998 * 120.00811 * 5.32948 * 12 10 9
31 31 H 0.96992 * 120.00117 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2053 1.0496 0.0000
4 6 3.4739 0.7276 0.0053
5 6 3.5624 -0.6659 -0.0014
6 6 4.8164 -1.5019 -0.0023
7 6 6.1483 -0.7771 -0.2062
8 6 5.7812 -1.3296 1.1726
9 6 2.2526 -1.1167 -0.0005
10 6 1.8005 -2.5157 -0.0004
11 8 1.6495 -3.1063 -1.0533
12 7 1.5533 -3.1438 1.1661
13 6 1.2384 -4.4755 1.1728
14 1 1.1884 -5.0232 0.2433
15 6 0.9828 -5.1235 2.3762
16 7 0.6810 -6.4020 2.3826
17 14 1.0701 -4.1764 3.9839
18 1 -0.2646 -3.6043 4.2945
19 1 1.4821 -5.0934 5.0769
20 1 2.0622 -3.0785 3.8585
21 1 -0.3633 0.0856 1.0241
22 1 -0.3633 0.8440 -0.5862
23 1 -0.3633 -0.9297 -0.4379
24 1 4.3049 1.4174 0.0109
25 1 4.7160 -2.4999 -0.4289
26 1 6.9242 -1.2984 -0.7669
27 1 6.1177 0.3043 -0.3392
28 1 5.5089 -0.6116 1.9462
29 1 6.3155 -2.2142 1.5190
30 1 1.5985 -2.6520 2.0010
31 1 0.5024 -6.8539 3.2220
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001118572675.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:16:11
Heat of formation + Delta-G solvation = 47.917193 kcal
Electronic energy + Delta-G solvation = -16431.898349 eV
Core-core repulsion = 13715.263460 eV
Total energy + Delta-G solvation = -2716.634888 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.106 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-43.47504 -40.12129 -38.11890 -36.21110 -34.09161 -33.89398 -31.77203 -28.11405
-27.25896 -24.58598 -23.44844 -23.08380 -21.27540 -20.94771 -20.22492 -18.53432
-17.43818 -16.86017 -16.69389 -16.44907 -15.67336 -15.37306 -15.12620 -14.91339
-14.47195 -14.12071 -13.80813 -13.61815 -13.11118 -12.91113 -12.54402 -12.29865
-12.08810 -11.92493 -11.69263 -11.62357 -11.22469 -10.93343 -10.42254 -10.10877
-9.45859 -8.54030 -6.15355 0.66694 1.12962 1.25797 1.36029 1.38220
1.64525 1.86474 2.12466 2.69367 3.03435 3.10122 3.46250 3.84161
3.96354 4.00728 4.20648 4.24879 4.32918 4.35730 4.51475 4.57857
4.83931 4.97376 5.09336 5.30477 5.33489 5.37486 5.54376 5.76848
5.82410 6.39180 6.66635 7.06862 7.16878 7.66007 8.61970
Molecular weight = 235.11amu
Principal moments of inertia in cm(-1)
A = 0.022192 B = 0.009107 C = 0.007901
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1261.390275 B = 3073.674232 C = 3543.030242
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.079 3.921
2 N -0.280 5.280
3 N -0.296 5.296
4 C 0.010 3.990
5 C -0.136 4.136
6 C -0.117 4.117
7 C -0.142 4.142
8 C -0.163 4.163
9 C -0.030 4.030
10 C 0.521 3.479
11 O -0.613 6.613
12 N -0.555 5.555
13 C -0.334 4.334
14 H 0.066 0.934
15 C 0.004 3.996
16 N -0.913 5.913
17 Si 0.952 3.048
18 H -0.251 1.251
19 H -0.264 1.264
20 H -0.244 1.244
21 H 0.105 0.895
22 H 0.122 0.878
23 H 0.079 0.921
24 H 0.219 0.781
25 H 0.078 0.922
26 H 0.108 0.892
27 H 0.118 0.882
28 H 0.105 0.895
29 H 0.100 0.900
30 H 0.388 0.612
31 H 0.285 0.715
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.159 15.626 2.679 17.008
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 N -0.068 5.068
3 N -0.126 5.126
4 C -0.167 4.167
5 C -0.147 4.147
6 C -0.137 4.137
7 C -0.179 4.179
8 C -0.200 4.200
9 C -0.159 4.159
10 C 0.306 3.694
11 O -0.498 6.498
12 N -0.193 5.193
13 C -0.463 4.463
14 H 0.084 0.916
15 C -0.198 4.198
16 N -0.552 5.552
17 Si 0.772 3.228
18 H -0.175 1.175
19 H -0.189 1.189
20 H -0.168 1.168
21 H 0.123 0.877
22 H 0.140 0.860
23 H 0.098 0.902
24 H 0.235 0.765
25 H 0.097 0.903
26 H 0.127 0.873
27 H 0.137 0.863
28 H 0.123 0.877
29 H 0.118 0.882
30 H 0.223 0.777
31 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 5.066 15.928 2.097 16.846
hybrid contribution 0.126 -1.131 0.634 1.303
sum 5.193 14.797 2.732 15.918
Atomic orbital electron populations
1.22420 0.71778 1.05756 1.06085 1.45812 1.08315 1.01341 1.51377
1.73044 1.04497 1.13526 1.21568 1.23781 0.93891 0.93486 1.05555
1.20072 0.91323 0.94527 1.08748 1.20137 0.88187 0.98419 1.06933
1.23101 0.94821 1.01381 0.98554 1.23089 1.01155 1.03792 0.91963
1.21367 0.92779 0.88453 1.13311 1.16832 0.83697 0.84950 0.83887
1.90673 1.58004 1.68471 1.32696 1.41917 1.60661 1.09525 1.07179
1.19031 1.47113 0.84247 0.95931 0.91577 1.25998 0.95191 0.96528
1.02098 1.69731 1.44926 1.10744 1.29761 0.85540 0.80483 0.79292
0.77485 1.17524 1.18862 1.16755 0.87684 0.85992 0.90194 0.76455
0.90333 0.87319 0.86335 0.87709 0.88181 0.77661 0.90486
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 2.07 11.21 127.77 1.43 3.50 16
2 N -0.28 -9.51 3.75 -356.03 -1.34 -10.84 16
3 N -0.30 -9.25 11.90 -57.15 -0.68 -9.93 16
4 C 0.01 0.28 11.41 85.17 0.97 1.26 16
5 C -0.14 -4.71 5.95 -19.46 -0.12 -4.82 16
6 C -0.12 -3.71 6.12 -11.54 -0.07 -3.78 16
7 C -0.14 -3.01 10.05 30.59 0.31 -2.71 16
8 C -0.16 -3.94 10.23 30.60 0.31 -3.62 16
9 C -0.03 -1.22 6.71 40.77 0.27 -0.95 16
10 C 0.52 25.73 6.78 86.55 0.59 26.31 16
11 O -0.61 -36.09 16.69 -4.24 -0.07 -36.16 16
12 N -0.56 -27.32 5.08 -310.35 -1.58 -28.89 16
13 C -0.33 -19.32 10.16 84.11 0.85 -18.46 16
14 H 0.07 4.50 7.39 -2.91 -0.02 4.48 16
15 C 0.00 0.20 5.50 84.96 0.47 0.67 16
16 N -0.91 -52.86 13.95 21.68 0.30 -52.56 16
17 Si 0.95 38.18 27.74 68.60 1.90 40.08 16
18 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16
19 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16
20 H -0.24 -8.82 6.52 99.48 0.65 -8.17 16
21 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16
22 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16
23 H 0.08 2.38 7.66 -2.39 -0.02 2.36 16
24 H 0.22 4.15 7.34 -2.91 -0.02 4.13 16
25 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16
26 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16
27 H 0.12 1.95 7.13 -2.39 -0.02 1.94 16
28 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16
29 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16
30 H 0.39 16.68 5.75 -92.71 -0.53 16.15 16
31 H 0.29 14.96 8.31 -92.71 -0.77 14.19 16
Total: -1.00 -74.03 276.39 4.13 -69.90
By element:
Atomic # 1 Polarization: 30.45 SS G_CDS: 0.56 Total: 31.01 kcal
Atomic # 6 Polarization: -7.63 SS G_CDS: 5.02 Total: -2.61 kcal
Atomic # 7 Polarization: -98.93 SS G_CDS: -3.29 Total: -102.22 kcal
Atomic # 8 Polarization: -36.09 SS G_CDS: -0.07 Total: -36.16 kcal
Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.08 kcal
Total: -74.03 4.13 -69.90 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118572675.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.815 kcal
(2) G-P(sol) polarization free energy of solvation -74.028 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.787 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.898 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.917 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds