Wall clock time and date at job start Sun Mar 29 2020 22:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 13 13 O 1.21283 * 120.00261 * 120.00003 * 12 2 1 14 14 N 1.34777 * 120.00075 * 300.00543 * 12 2 1 15 15 C 1.46500 * 120.00084 * 180.02562 * 14 12 2 16 16 C 1.50696 * 109.46995 * 179.97438 * 15 14 12 17 17 C 1.38624 * 120.44888 * 94.71841 * 16 15 14 18 18 C 1.38572 * 118.40095 * 179.80367 * 17 16 15 19 19 N 1.32351 * 119.10559 * 0.46796 * 18 17 16 20 20 C 1.31778 * 120.81619 * 359.75022 * 19 18 17 21 21 N 1.31814 * 121.75626 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 0.96996 * 119.99636 * 359.97438 * 14 12 2 27 27 H 1.09001 * 109.47049 * 299.99628 * 15 14 12 28 28 H 1.09000 * 109.47381 * 59.99594 * 15 14 12 29 29 H 1.08007 * 120.79853 * 0.02627 * 17 16 15 30 30 H 1.08008 * 120.44807 * 180.22349 * 18 17 16 31 31 H 1.08005 * 119.12196 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.1956 -0.9404 3.6507 16 6 1.6936 -0.2298 4.8811 17 6 0.5337 -0.6518 5.5120 18 6 0.1130 0.0298 6.6427 19 7 0.8226 1.0601 7.0746 20 6 1.9184 1.4359 6.4464 21 7 2.3511 0.8088 5.3708 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 1.1493 0.5387 2.5435 27 1 1.8328 -1.9682 3.6508 28 1 3.2856 -0.9399 3.6505 29 1 -0.0268 -1.4939 5.1334 30 1 -0.7842 -0.2731 7.1623 31 1 2.4763 2.2808 6.8224 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118845587.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:09 Heat of formation + Delta-G solvation = 5.163547 kcal Electronic energy + Delta-G solvation = -15778.594476 eV Core-core repulsion = 13060.105651 eV Total energy + Delta-G solvation = -2718.488825 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.21089 -38.79480 -35.19636 -33.74395 -33.32248 -32.13640 -30.44437 -27.23197 -25.13856 -24.57802 -23.23264 -21.99812 -19.50310 -17.75821 -17.36603 -16.28322 -15.79320 -15.62801 -15.42261 -14.61666 -14.50056 -14.33011 -13.83687 -13.02823 -12.79660 -12.74588 -12.18825 -11.49146 -11.09346 -11.02586 -10.96110 -10.73082 -10.66695 -10.27727 -9.97921 -9.91683 -9.45334 -8.98312 -8.65565 -8.55361 -8.33695 -6.03140 -4.06458 0.66055 0.80283 3.34268 3.39903 3.43652 3.48812 3.67358 3.78720 3.95420 4.06795 4.28090 4.48539 4.77716 4.83791 5.26564 5.30068 5.34614 5.68090 5.72377 6.15267 6.21374 6.59758 6.78714 6.80649 6.88044 6.95037 7.46113 7.74140 7.87002 7.96891 8.11230 8.39707 9.02533 9.17245 9.59125 11.04527 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.055699 B = 0.004867 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.580061 B = 5751.378915 C = 5902.778134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.054 0.946 4 C -0.501 4.501 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.523 3.477 13 O -0.543 6.543 14 N -0.740 5.740 15 C 0.168 3.832 16 C 0.167 3.833 17 C -0.211 4.211 18 C 0.146 3.854 19 N -0.523 5.523 20 C 0.293 3.707 21 N -0.506 5.506 22 H 0.011 0.989 23 H 0.032 0.968 24 H 0.093 0.907 25 H 0.261 0.739 26 H 0.397 0.603 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.170 0.830 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 0.159 16.188 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.539 4.539 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.313 3.687 13 O -0.418 6.418 14 N -0.395 5.395 15 C 0.043 3.957 16 C 0.020 3.980 17 C -0.233 4.233 18 C -0.019 4.019 19 N -0.237 5.237 20 C 0.005 3.995 21 N -0.220 5.220 22 H 0.030 0.970 23 H 0.051 0.949 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.230 0.770 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.169 0.831 30 H 0.187 0.813 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.038 0.303 16.286 16.416 hybrid contribution -0.514 -0.664 -0.945 1.264 sum -2.551 -0.361 15.341 15.556 Atomic orbital electron populations 1.21746 0.96519 0.99823 1.00916 1.18884 0.94155 0.96926 0.89102 0.92873 1.21141 1.31027 1.12828 0.88932 0.90723 1.24952 0.95117 0.95049 0.99137 1.69867 1.37153 1.23051 1.23564 0.86440 0.79465 0.79223 0.82017 1.20677 1.21302 1.19713 1.22044 0.78334 0.84259 0.84077 1.90541 1.37845 1.26912 1.86534 1.46235 1.55763 1.32791 1.04749 1.20050 1.00477 0.94861 0.80322 1.21858 0.90368 0.90689 0.95096 1.22898 0.98518 1.03514 0.98361 1.23261 0.97494 0.89174 0.92019 1.68419 1.07642 1.14920 1.32725 1.25040 0.89987 0.97072 0.87402 1.68322 1.33308 1.07750 1.12633 0.97048 0.94923 0.88795 0.92951 0.76959 0.89907 0.89777 0.83097 0.81330 0.78625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.87 37.16 0.33 -2.67 16 2 C 0.03 0.76 2.64 -92.92 -0.25 0.51 16 3 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.50 -14.17 8.37 -34.44 -0.29 -14.46 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.15 11.32 55.43 0.63 -24.52 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.52 11.80 7.15 -10.99 -0.08 11.72 16 13 O -0.54 -13.95 15.46 5.55 0.09 -13.87 16 14 N -0.74 -12.84 5.44 -61.47 -0.33 -13.18 16 15 C 0.17 2.45 6.03 -5.20 -0.03 2.42 16 16 C 0.17 2.09 6.19 -82.24 -0.51 1.58 16 17 C -0.21 -2.08 9.84 -39.32 -0.39 -2.47 16 18 C 0.15 1.34 11.30 -17.20 -0.19 1.15 16 19 N -0.52 -5.70 10.44 -14.58 -0.15 -5.85 16 20 C 0.29 3.22 12.29 -92.15 -1.13 2.09 16 21 N -0.51 -6.61 10.38 -10.80 -0.11 -6.72 16 22 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.40 6.28 7.88 -40.82 -0.32 5.96 16 27 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.20 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 275.11 15.07 4.15 4.15 Total: -1.00 -32.31 275.11 -6.87 -39.18 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -3.47 Total: 2.69 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -2.63 Total: 1.38 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.03 Total: -50.27 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.31 -6.87 -39.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118845587.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.344 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds