Wall clock time and date at job start Sun Mar 29 2020 22:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 13 13 O 1.21283 * 120.00261 * 120.00003 * 12 2 1 14 14 N 1.34777 * 120.00075 * 300.00543 * 12 2 1 15 15 C 1.46500 * 120.00084 * 180.02562 * 14 12 2 16 16 C 1.50696 * 109.46995 * 179.97438 * 15 14 12 17 17 C 1.38624 * 120.44888 * 94.71841 * 16 15 14 18 18 C 1.38572 * 118.40095 * 179.80367 * 17 16 15 19 19 N 1.32351 * 119.10559 * 0.46796 * 18 17 16 20 20 C 1.31778 * 120.81619 * 359.75022 * 19 18 17 21 21 N 1.31814 * 121.75626 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 0.96996 * 119.99636 * 359.97438 * 14 12 2 27 27 H 1.09001 * 109.47049 * 299.99628 * 15 14 12 28 28 H 1.09000 * 109.47381 * 59.99594 * 15 14 12 29 29 H 1.08007 * 120.79853 * 0.02627 * 17 16 15 30 30 H 1.08008 * 120.44807 * 180.22349 * 18 17 16 31 31 H 1.08005 * 119.12196 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.1956 -0.9404 3.6507 16 6 1.6936 -0.2298 4.8811 17 6 0.5337 -0.6518 5.5120 18 6 0.1130 0.0298 6.6427 19 7 0.8226 1.0601 7.0746 20 6 1.9184 1.4359 6.4464 21 7 2.3511 0.8088 5.3708 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 1.1493 0.5387 2.5435 27 1 1.8328 -1.9682 3.6508 28 1 3.2856 -0.9399 3.6505 29 1 -0.0268 -1.4939 5.1334 30 1 -0.7842 -0.2731 7.1623 31 1 2.4763 2.2808 6.8224 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118845587.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:09 Heat of formation + Delta-G solvation = -17.286968 kcal Electronic energy + Delta-G solvation = -15779.568004 eV Core-core repulsion = 13060.105651 eV Total energy + Delta-G solvation = -2719.462353 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.06273 -40.51431 -36.47012 -35.76285 -34.39242 -33.23402 -32.29463 -28.46410 -27.18126 -25.37282 -24.64033 -23.39821 -21.21387 -18.65876 -18.59329 -18.22792 -17.26708 -16.94533 -16.40072 -16.23638 -16.04525 -15.56683 -14.81742 -14.68304 -14.46312 -13.98946 -13.71854 -13.35487 -12.96299 -12.69386 -12.58570 -12.20375 -12.01587 -11.88748 -11.83281 -11.04390 -10.80762 -10.57063 -10.35582 -10.24571 -10.08010 -8.14533 -6.25185 -0.19522 0.02303 1.42255 1.42914 1.54884 1.88602 2.27990 2.48484 2.84495 2.96358 3.15305 3.25784 3.45199 3.90958 4.13171 4.27376 4.41240 4.60067 4.64699 4.75193 4.77950 4.94006 5.01629 5.37264 5.44130 5.49268 5.74698 5.93325 5.97918 6.20246 6.64767 6.84532 7.05711 7.38405 7.48691 8.91357 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.055699 B = 0.004867 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.580061 B = 5751.378915 C = 5902.778134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.038 0.962 4 C -0.529 4.529 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.527 3.473 13 O -0.581 6.581 14 N -0.719 5.719 15 C 0.171 3.829 16 C 0.149 3.851 17 C -0.201 4.201 18 C 0.152 3.848 19 N -0.533 5.533 20 C 0.287 3.713 21 N -0.534 5.534 22 H 0.049 0.951 23 H 0.028 0.972 24 H 0.070 0.930 25 H 0.265 0.735 26 H 0.407 0.593 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.175 0.825 30 H 0.208 0.792 31 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 0.139 17.428 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.056 0.944 4 C -0.567 4.567 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.203 1.203 12 C 0.316 3.684 13 O -0.460 6.460 14 N -0.373 5.373 15 C 0.047 3.953 16 C 0.003 3.997 17 C -0.223 4.223 18 C -0.014 4.014 19 N -0.247 5.247 20 C -0.001 4.001 21 N -0.249 5.249 22 H 0.068 0.932 23 H 0.047 0.953 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.242 0.758 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.193 0.807 30 H 0.224 0.776 31 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -3.292 0.317 17.562 17.870 hybrid contribution -0.154 -0.616 -1.221 1.376 sum -3.446 -0.300 16.341 16.703 Atomic orbital electron populations 1.21548 0.94832 0.99679 1.01586 1.18818 0.95533 0.95836 0.89536 0.94376 1.21290 1.31627 1.12776 0.91005 0.93116 1.25606 0.95185 0.95722 1.01484 1.69951 1.37291 1.23568 1.24323 0.85575 0.78678 0.78507 0.79007 1.19825 1.20130 1.20336 1.21526 0.78093 0.83678 0.85117 1.90519 1.39645 1.28554 1.87303 1.45891 1.54562 1.32568 1.04295 1.20086 0.99651 0.95546 0.80065 1.21570 0.91809 0.91415 0.94938 1.23124 0.97283 1.03828 0.98094 1.23919 0.98026 0.87996 0.91479 1.68508 1.07741 1.15629 1.32818 1.25497 0.90318 0.97441 0.86828 1.68259 1.34300 1.08522 1.13841 0.93234 0.95328 0.91155 0.92612 0.75815 0.88729 0.91363 0.80747 0.77562 0.76429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.87 71.98 0.64 -4.67 16 2 C 0.02 1.20 2.64 -12.29 -0.03 1.17 16 3 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 4 C -0.53 -30.54 8.37 25.60 0.21 -30.32 16 5 H 0.05 3.12 6.75 -2.91 -0.02 3.10 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.91 -51.20 11.32 21.45 0.24 -50.96 16 8 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 C 0.53 23.92 7.15 87.66 0.63 24.55 16 13 O -0.58 -30.48 15.46 -3.04 -0.05 -30.53 16 14 N -0.72 -24.41 5.44 -466.79 -2.54 -26.95 16 15 C 0.17 4.85 6.03 85.63 0.52 5.37 16 16 C 0.15 3.47 6.19 42.58 0.26 3.74 16 17 C -0.20 -3.37 9.84 22.44 0.22 -3.15 16 18 C 0.15 2.24 11.30 84.69 0.96 3.20 16 19 N -0.53 -10.19 10.44 -200.04 -2.09 -12.28 16 20 C 0.29 5.79 12.29 180.88 2.22 8.01 16 21 N -0.53 -13.31 10.38 -188.07 -1.95 -15.26 16 22 H 0.05 1.79 7.56 -2.39 -0.02 1.77 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.07 3.51 6.07 -2.38 -0.01 3.50 16 25 H 0.26 14.07 8.31 -92.71 -0.77 13.29 16 26 H 0.41 12.27 7.88 -92.71 -0.73 11.54 16 27 H 0.09 2.49 8.07 -2.39 -0.02 2.47 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 29 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.22 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -70.24 275.11 2.14 -68.10 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.42 Total: 11.65 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 6.08 Total: 9.40 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -6.34 Total: -105.45 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.05 Total: -30.53 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -70.24 2.14 -68.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118845587.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.813 kcal (2) G-P(sol) polarization free energy of solvation -70.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds