Wall clock time and date at job start Sun Mar 29 2020 22:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31512 * 119.99866 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00085 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.47050 * 90.00069 * 8 6 4 10 10 H 1.48500 * 109.47345 * 209.99734 * 8 6 4 11 11 H 1.48494 * 109.47213 * 330.00170 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.50694 * 109.47550 * 180.02562 * 15 14 12 17 17 C 1.38629 * 120.44856 * 94.72052 * 16 15 14 18 18 C 1.38569 * 118.39811 * 179.80529 * 17 16 15 19 19 N 1.32350 * 119.10808 * 0.47791 * 18 17 16 20 20 C 1.31782 * 120.81904 * 359.74281 * 19 18 17 21 21 N 1.31814 * 121.75324 * 0.02562 * 20 19 18 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 24 24 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99789 * 179.97438 * 7 6 4 26 26 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 27 27 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 28 28 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 29 29 H 1.08000 * 120.79582 * 0.02562 * 17 16 15 30 30 H 1.08003 * 120.45005 * 180.22200 * 18 17 16 31 31 H 1.07997 * 119.12495 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8744 2.6992 10 1 0.9772 1.9953 3.9070 11 1 0.8492 2.1772 1.4923 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6792 -0.2397 -4.8812 17 6 2.4623 0.7113 -5.5170 18 6 1.9564 1.3327 -6.6475 19 7 0.7467 1.0070 -7.0744 20 6 0.0286 0.1012 -6.4416 21 7 0.4790 -0.5137 -5.3661 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.9032 -0.5280 4.4374 26 1 1.1446 0.5355 -2.5436 27 1 3.2755 -0.9477 -3.6550 28 1 1.8218 -1.9748 -3.6465 29 1 3.4444 0.9592 -5.1422 30 1 2.5397 2.0759 -7.1708 31 1 -0.9550 -0.1440 -6.8140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118845588.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:12 Heat of formation + Delta-G solvation = 15.153029 kcal Electronic energy + Delta-G solvation = -15842.848849 eV Core-core repulsion = 13124.793200 eV Total energy + Delta-G solvation = -2718.055649 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.27999 -38.97264 -35.29658 -33.84549 -33.40502 -32.23169 -31.14220 -27.43897 -25.14072 -24.64458 -23.43656 -22.12359 -19.59319 -17.82901 -17.37906 -16.78206 -15.85397 -15.71531 -15.59267 -14.84099 -14.61968 -14.30767 -13.92405 -13.34757 -13.02118 -12.78543 -12.34184 -12.24288 -11.59420 -11.15994 -11.02221 -10.97239 -10.62485 -10.31626 -9.98912 -9.65147 -9.51779 -9.11281 -8.76233 -8.69392 -8.57561 -6.05787 -4.06218 0.59068 0.73580 3.23159 3.30093 3.35741 3.36579 3.51323 3.70016 3.89084 3.96013 4.20473 4.37181 4.70574 4.77423 5.20217 5.23660 5.27078 5.58281 5.63499 5.87740 6.08993 6.11313 6.30366 6.43561 6.70311 6.72187 6.78044 7.15094 7.52066 7.80453 8.01910 8.53279 9.00993 9.14085 9.52978 11.07153 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.044268 B = 0.005404 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.362368 B = 5180.519120 C = 5460.581389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 H 0.052 0.948 4 C -0.506 4.506 5 H 0.094 0.906 6 C 0.071 3.929 7 N -0.895 5.895 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.268 1.268 12 C 0.531 3.469 13 O -0.527 6.527 14 N -0.741 5.741 15 C 0.168 3.832 16 C 0.166 3.834 17 C -0.210 4.210 18 C 0.146 3.854 19 N -0.522 5.522 20 C 0.293 3.707 21 N -0.505 5.505 22 H 0.049 0.951 23 H 0.032 0.968 24 H 0.059 0.941 25 H 0.265 0.735 26 H 0.396 0.604 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.152 0.848 30 H 0.170 0.830 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 6.257 -19.162 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 H 0.070 0.930 4 C -0.544 4.544 5 H 0.112 0.888 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.320 3.680 13 O -0.401 6.401 14 N -0.397 5.397 15 C 0.044 3.956 16 C 0.019 3.981 17 C -0.233 4.233 18 C -0.019 4.019 19 N -0.237 5.237 20 C 0.005 3.995 21 N -0.220 5.220 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.229 0.771 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.170 0.830 30 H 0.187 0.813 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.791 5.262 -19.191 20.094 hybrid contribution -0.134 1.450 0.377 1.504 sum -2.925 6.712 -18.814 20.188 Atomic orbital electron populations 1.22116 0.97234 1.01643 0.99197 1.19314 0.93260 0.97539 0.92327 0.92986 1.20933 1.32169 1.14152 0.87175 0.88808 1.24974 0.95798 0.96558 0.95756 1.69879 1.45436 1.40140 0.97874 0.86917 0.80763 0.83817 0.77051 1.20496 1.22290 1.19319 1.21329 0.78815 0.84297 0.83565 1.90596 1.37159 1.26089 1.86252 1.46175 1.55928 1.32727 1.04838 1.20064 0.99073 0.96449 0.80054 1.21849 0.89395 0.91723 0.95162 1.22905 1.03362 0.98660 0.98350 1.23270 0.91176 0.95442 0.92040 1.68425 1.07119 1.15478 1.32637 1.25047 0.99444 0.87654 0.87334 1.68327 1.14307 1.26528 1.12818 0.93259 0.94920 0.92230 0.92538 0.77079 0.89680 0.89557 0.83041 0.81301 0.78612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.57 37.16 0.32 -2.67 16 2 C 0.00 -0.06 2.23 -92.92 -0.21 -0.27 16 3 H 0.05 1.16 7.20 -51.93 -0.37 0.79 16 4 C -0.51 -14.56 8.96 -34.44 -0.31 -14.87 16 5 H 0.09 3.07 7.00 -52.49 -0.37 2.70 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 8 Si 0.88 21.27 24.37 -169.99 -4.14 17.13 16 9 H -0.28 -6.50 6.87 56.52 0.39 -6.11 16 10 H -0.30 -7.16 7.11 56.52 0.40 -6.75 16 11 H -0.27 -5.98 6.53 56.52 0.37 -5.61 16 12 C 0.53 11.41 7.15 -10.98 -0.08 11.33 16 13 O -0.53 -13.34 15.46 5.55 0.09 -13.25 16 14 N -0.74 -11.92 5.44 -61.47 -0.33 -12.25 16 15 C 0.17 2.30 6.03 -5.20 -0.03 2.27 16 16 C 0.17 1.93 6.19 -82.24 -0.51 1.42 16 17 C -0.21 -1.91 9.84 -39.31 -0.39 -2.30 16 18 C 0.15 1.24 11.30 -17.21 -0.19 1.05 16 19 N -0.52 -5.37 10.44 -14.58 -0.15 -5.52 16 20 C 0.29 3.03 12.29 -92.15 -1.13 1.90 16 21 N -0.51 -6.21 10.38 -10.79 -0.11 -6.32 16 22 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 23 H 0.03 0.54 7.55 -51.93 -0.39 0.15 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.40 5.60 7.87 -40.82 -0.32 5.27 16 27 H 0.09 1.09 8.06 -51.93 -0.42 0.67 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.17 0.86 8.06 -52.48 -0.42 0.44 16 31 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 268.27 15.07 4.04 4.04 Total: -1.00 -34.38 268.27 -5.80 -40.18 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.34 Total: 3.02 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.63 Total: -0.19 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.18 Total: -50.93 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.14 Total: 17.13 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.38 -5.80 -40.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118845588.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.334 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds