Wall clock time and date at job start Sun Mar 29 2020 22:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31512 * 119.99866 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00085 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.47050 * 90.00069 * 8 6 4 10 10 H 1.48500 * 109.47345 * 209.99734 * 8 6 4 11 11 H 1.48494 * 109.47213 * 330.00170 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.50694 * 109.47550 * 180.02562 * 15 14 12 17 17 C 1.38629 * 120.44856 * 94.72052 * 16 15 14 18 18 C 1.38569 * 118.39811 * 179.80529 * 17 16 15 19 19 N 1.32350 * 119.10808 * 0.47791 * 18 17 16 20 20 C 1.31782 * 120.81904 * 359.74281 * 19 18 17 21 21 N 1.31814 * 121.75324 * 0.02562 * 20 19 18 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 24 24 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99789 * 179.97438 * 7 6 4 26 26 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 27 27 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 28 28 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 29 29 H 1.08000 * 120.79582 * 0.02562 * 17 16 15 30 30 H 1.08003 * 120.45005 * 180.22200 * 18 17 16 31 31 H 1.07997 * 119.12495 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8744 2.6992 10 1 0.9772 1.9953 3.9070 11 1 0.8492 2.1772 1.4923 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6792 -0.2397 -4.8812 17 6 2.4623 0.7113 -5.5170 18 6 1.9564 1.3327 -6.6475 19 7 0.7467 1.0070 -7.0744 20 6 0.0286 0.1012 -6.4416 21 7 0.4790 -0.5137 -5.3661 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.9032 -0.5280 4.4374 26 1 1.1446 0.5355 -2.5436 27 1 3.2755 -0.9477 -3.6550 28 1 1.8218 -1.9748 -3.6465 29 1 3.4444 0.9592 -5.1422 30 1 2.5397 2.0759 -7.1708 31 1 -0.9550 -0.1440 -6.8140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118845588.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:12 Heat of formation + Delta-G solvation = -11.602389 kcal Electronic energy + Delta-G solvation = -15844.009051 eV Core-core repulsion = 13124.793200 eV Total energy + Delta-G solvation = -2719.215851 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.06532 -40.61592 -36.50269 -35.80254 -34.41988 -33.48480 -32.80578 -28.59383 -27.11090 -25.37087 -24.83302 -23.40656 -21.22998 -18.82980 -18.61110 -18.49252 -17.23881 -17.16389 -16.39130 -16.26699 -16.12514 -15.52657 -14.98586 -14.91344 -14.55127 -14.08799 -13.86046 -13.76071 -13.40268 -12.80140 -12.54635 -12.16959 -11.88288 -11.82432 -11.47397 -11.22562 -10.83405 -10.74607 -10.45139 -10.27224 -10.12191 -8.26385 -6.34280 -0.19553 0.02409 1.34314 1.40065 1.51429 1.81363 2.25124 2.34931 2.82679 2.95750 3.07296 3.26229 3.45102 3.90093 4.09490 4.14194 4.38160 4.41412 4.55570 4.60062 4.63077 4.77678 4.78849 4.99833 5.36113 5.40723 5.43732 5.52042 5.98050 6.25151 6.60354 6.82671 7.06063 7.26220 7.42859 8.91275 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.044268 B = 0.005404 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.362368 B = 5180.519120 C = 5460.581389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 H 0.073 0.927 4 C -0.521 4.521 5 H 0.032 0.968 6 C 0.007 3.993 7 N -0.952 5.952 8 Si 0.958 3.042 9 H -0.263 1.263 10 H -0.299 1.299 11 H -0.230 1.230 12 C 0.532 3.468 13 O -0.579 6.579 14 N -0.716 5.716 15 C 0.170 3.830 16 C 0.149 3.851 17 C -0.201 4.201 18 C 0.152 3.848 19 N -0.533 5.533 20 C 0.287 3.713 21 N -0.532 5.532 22 H 0.046 0.954 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.267 0.733 26 H 0.410 0.590 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.175 0.825 30 H 0.207 0.793 31 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 9.339 -21.545 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 H 0.090 0.910 4 C -0.559 4.559 5 H 0.050 0.950 6 C -0.189 4.189 7 N -0.592 5.592 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.227 1.227 11 H -0.153 1.153 12 C 0.321 3.679 13 O -0.457 6.457 14 N -0.371 5.371 15 C 0.046 3.954 16 C 0.003 3.997 17 C -0.223 4.223 18 C -0.014 4.014 19 N -0.248 5.248 20 C 0.000 4.000 21 N -0.247 5.247 22 H 0.065 0.935 23 H 0.099 0.901 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.246 0.754 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.193 0.807 30 H 0.223 0.777 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.151 8.370 -21.643 23.574 hybrid contribution 0.363 0.419 1.015 1.156 sum -3.788 8.789 -20.629 22.740 Atomic orbital electron populations 1.22015 0.94686 1.01613 1.01339 1.19265 0.95194 0.97679 0.90748 0.90955 1.21090 1.31665 1.12901 0.90264 0.95009 1.26011 0.97403 1.00668 0.94835 1.70073 1.47636 1.42771 0.98734 0.85723 0.78722 0.79134 0.78086 1.18878 1.22694 1.15304 1.21035 0.78418 0.83595 0.84870 1.90585 1.39622 1.28318 1.87143 1.45799 1.54694 1.32539 1.04035 1.20079 0.99597 0.95678 0.80018 1.21539 0.90178 0.92994 0.94953 1.23124 1.03843 0.97272 0.98047 1.23907 0.90688 0.95303 0.91536 1.68510 1.07969 1.15525 1.32748 1.25493 1.00337 0.87421 0.86779 1.68266 1.14945 1.27520 1.14001 0.93512 0.90130 0.93562 0.92386 0.75398 0.88790 0.91337 0.80743 0.77667 0.76458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.57 71.98 0.62 -4.73 16 2 C -0.01 -0.33 2.23 -12.29 -0.03 -0.35 16 3 H 0.07 3.00 7.20 -2.38 -0.02 2.98 16 4 C -0.52 -30.98 8.96 25.60 0.23 -30.75 16 5 H 0.03 2.23 7.00 -2.91 -0.02 2.21 16 6 C 0.01 0.43 5.45 84.65 0.46 0.89 16 7 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 8 Si 0.96 42.88 24.37 68.60 1.67 44.55 16 9 H -0.26 -11.10 6.87 99.48 0.68 -10.41 16 10 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.23 -8.84 6.53 99.48 0.65 -8.19 16 12 C 0.53 22.78 7.15 87.66 0.63 23.41 16 13 O -0.58 -30.47 15.46 -3.04 -0.05 -30.51 16 14 N -0.72 -21.78 5.44 -466.79 -2.54 -24.31 16 15 C 0.17 4.49 6.03 85.63 0.52 5.00 16 16 C 0.15 3.16 6.19 42.58 0.26 3.42 16 17 C -0.20 -2.97 9.84 22.44 0.22 -2.74 16 18 C 0.15 1.98 11.30 84.69 0.96 2.94 16 19 N -0.53 -9.29 10.44 -200.05 -2.09 -11.38 16 20 C 0.29 5.24 12.29 180.88 2.22 7.46 16 21 N -0.53 -12.06 10.38 -188.06 -1.95 -14.01 16 22 H 0.05 1.83 3.27 -2.39 -0.01 1.82 16 23 H 0.08 2.32 7.55 -2.39 -0.02 2.30 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 26 H 0.41 10.21 7.87 -92.71 -0.73 9.48 16 27 H 0.09 2.32 8.06 -2.39 -0.02 2.30 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.21 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.22 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -79.57 268.27 1.78 -77.79 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.35 Total: 14.05 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 6.09 Total: 4.54 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -6.28 Total: -110.42 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.05 Total: -30.51 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.67 Total: 44.55 kcal Total: -79.57 1.78 -77.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118845588.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.191 kcal (2) G-P(sol) polarization free energy of solvation -79.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds