Wall clock time and date at job start Sun Mar 29 2020 22:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47032 * 2 1 4 4 N 1.46901 * 109.47198 * 119.99901 * 2 1 3 5 5 C 1.50695 * 109.47399 * 240.00082 * 2 1 3 6 6 O 1.21279 * 120.00213 * 239.99963 * 5 2 1 7 7 N 1.34783 * 119.99978 * 59.99819 * 5 2 1 8 8 C 1.39261 * 119.99839 * 183.72888 * 7 5 2 9 9 C 1.39668 * 119.58006 * 339.09828 * 8 7 5 10 10 C 1.38655 * 119.49832 * 180.02562 * 9 8 7 11 11 C 1.38337 * 118.67115 * 359.97438 * 10 9 8 12 12 C 1.40581 * 119.13290 * 0.02562 * 11 10 9 13 13 C 1.41327 * 119.79058 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00387 * 5.12355 * 13 12 11 15 15 C 1.40038 * 119.99986 * 185.12784 * 13 12 11 16 16 N 1.30737 * 119.99992 * 184.81908 * 15 13 12 17 17 Si 1.86798 * 119.99879 * 4.82223 * 15 13 12 18 18 H 1.48503 * 109.47141 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.46996 * 300.00196 * 17 15 13 20 20 H 1.48504 * 109.47111 * 59.99956 * 17 15 13 21 21 N 1.31908 * 119.57429 * 159.39653 * 8 7 5 22 22 H 1.09000 * 109.47032 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46957 * 299.99790 * 1 2 3 24 24 H 1.08995 * 109.47132 * 59.99821 * 1 2 3 25 25 H 1.00903 * 111.00094 * 299.99774 * 4 2 1 26 26 H 1.00900 * 111.00237 * 63.95618 * 4 2 1 27 27 H 0.97001 * 119.99688 * 3.72605 * 7 5 2 28 28 H 1.08004 * 120.25188 * 0.04705 * 9 8 7 29 29 H 1.08005 * 120.66247 * 179.97438 * 10 9 8 30 30 H 1.08004 * 120.43635 * 180.02562 * 11 10 9 31 31 H 0.96997 * 120.00062 * 354.99723 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0324 -0.7104 -1.2304 6 8 2.7296 -1.6964 -1.1192 7 7 1.7068 -0.2499 -2.4546 8 6 2.1057 -0.9497 -3.5905 9 6 3.1752 -1.8443 -3.5091 10 6 3.5712 -2.5399 -4.6412 11 6 2.8888 -2.3245 -5.8251 12 6 1.8205 -1.4109 -5.8428 13 6 1.1133 -1.1806 -7.0446 14 1 1.3390 -1.7648 -7.9244 15 6 0.1200 -0.1947 -7.0946 16 7 -0.5986 -0.0451 -8.1765 17 14 -0.1781 0.9066 -5.6155 18 1 -1.2744 1.8604 -5.9216 19 1 -0.5582 0.0733 -4.4466 20 1 1.0616 1.6619 -5.3029 21 7 1.4723 -0.7549 -4.7311 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.6962 -0.2349 2.0386 26 1 1.7503 -1.6648 1.1910 27 1 1.1945 0.5690 -2.5443 28 1 3.6896 -1.9934 -2.5712 29 1 4.3961 -3.2359 -4.5997 30 1 3.1730 -2.8513 -6.7241 31 1 -0.3964 -0.5665 -8.9690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119317724.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:16 Heat of formation + Delta-G solvation = -8.140224 kcal Electronic energy + Delta-G solvation = -16388.609299 eV Core-core repulsion = 13669.543579 eV Total energy + Delta-G solvation = -2719.065720 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.26719 -38.28028 -35.30594 -34.59496 -33.49637 -31.12122 -29.84759 -28.59697 -25.50523 -24.44773 -21.90691 -21.52127 -19.74727 -18.41880 -17.62124 -16.87779 -15.60037 -15.19070 -14.95696 -14.64123 -14.21222 -13.62911 -13.50032 -13.39790 -12.91091 -12.67258 -12.49510 -12.21719 -11.87067 -11.68502 -11.10234 -10.85065 -10.35126 -9.99711 -9.68205 -9.22762 -9.14224 -8.85128 -8.55766 -7.76812 -7.49245 -7.23583 -4.79386 2.21273 2.63279 3.00508 3.21699 3.49879 3.61354 3.94102 4.36612 4.39401 4.59881 4.67886 4.84939 4.96337 5.39649 5.50314 5.54614 5.85346 5.86318 6.07684 6.44236 6.51230 6.57378 6.83281 7.12720 7.19400 7.25711 7.42102 7.56214 7.63156 7.75715 8.10384 8.28276 8.45351 8.63760 9.38712 9.98016 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.008797 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.471022 B = 3182.194189 C = 4039.442647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.074 3.926 3 H 0.110 0.890 4 N -0.826 5.826 5 C 0.517 3.483 6 O -0.500 6.500 7 N -0.654 5.654 8 C 0.385 3.615 9 C -0.314 4.314 10 C -0.036 4.036 11 C -0.277 4.277 12 C 0.273 3.727 13 C -0.477 4.477 14 H 0.083 0.917 15 C 0.043 3.957 16 N -0.806 5.806 17 Si 1.154 2.846 18 H -0.333 1.333 19 H -0.280 1.280 20 H -0.294 1.294 21 N -0.599 5.599 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.346 0.654 26 H 0.350 0.650 27 H 0.405 0.595 28 H 0.146 0.854 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 2.274 13.311 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.041 4.041 3 H 0.127 0.873 4 N -0.358 5.358 5 C 0.303 3.697 6 O -0.373 6.373 7 N -0.299 5.299 8 C 0.154 3.846 9 C -0.338 4.338 10 C -0.060 4.060 11 C -0.299 4.299 12 C 0.149 3.851 13 C -0.509 4.509 14 H 0.101 0.899 15 C -0.178 4.178 16 N -0.428 5.428 17 Si 0.990 3.010 18 H -0.266 1.266 19 H -0.208 1.208 20 H -0.223 1.223 21 N -0.325 5.325 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.160 0.840 26 H 0.165 0.835 27 H 0.241 0.759 28 H 0.163 0.837 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.265 3.430 13.556 13.985 hybrid contribution 0.362 -1.713 -0.780 1.917 sum 0.627 1.717 12.776 12.906 Atomic orbital electron populations 1.22625 0.95272 1.03320 1.03538 1.21329 0.93710 0.99271 0.89786 0.87267 1.58504 1.67350 1.07380 1.02547 1.20476 0.80528 0.84906 0.83839 1.90587 1.35304 1.25688 1.85743 1.43263 1.54895 1.27167 1.04580 1.18130 0.90162 0.91040 0.85242 1.21770 1.03392 1.07515 1.01162 1.20968 0.96672 0.95882 0.92482 1.21615 1.02883 1.07512 0.97903 1.18272 0.89572 0.87625 0.89670 1.20723 1.16798 1.17285 0.96076 0.89866 1.27778 0.90069 0.96716 1.03263 1.70640 1.32776 1.36418 1.02970 0.81857 0.74166 0.72694 0.72303 1.26630 1.20816 1.22255 1.65976 1.32787 1.34207 0.99512 0.91831 0.91259 0.90997 0.84023 0.83527 0.75932 0.83683 0.87569 0.87683 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 9.38 37.16 0.35 -1.44 16 2 C 0.07 0.84 3.78 -68.87 -0.26 0.58 16 3 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 4 N -0.83 -8.79 8.88 -5.66 -0.05 -8.84 16 5 C 0.52 8.60 7.09 -10.99 -0.08 8.53 16 6 O -0.50 -9.93 12.86 5.56 0.07 -9.86 16 7 N -0.65 -12.08 5.28 -11.40 -0.06 -12.14 16 8 C 0.38 8.90 7.51 -154.98 -1.16 7.73 16 9 C -0.31 -7.20 8.90 -38.89 -0.35 -7.54 16 10 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 11 C -0.28 -6.69 9.83 -38.66 -0.38 -7.07 16 12 C 0.27 7.23 6.40 -85.00 -0.54 6.68 16 13 C -0.48 -13.06 9.57 -37.73 -0.36 -13.42 16 14 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16 15 C 0.04 1.16 5.52 -17.34 -0.10 1.07 16 16 N -0.81 -21.94 13.65 55.55 0.76 -21.18 16 17 Si 1.15 27.62 25.61 -169.99 -4.35 23.26 16 18 H -0.33 -7.86 7.11 56.52 0.40 -7.46 16 19 H -0.28 -6.55 6.61 56.52 0.37 -6.18 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 N -0.60 -15.23 4.54 -10.26 -0.05 -15.28 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.70 7.65 -51.93 -0.40 0.31 16 25 H 0.35 2.58 9.04 -39.29 -0.36 2.22 16 26 H 0.35 3.88 8.68 -39.29 -0.34 3.54 16 27 H 0.41 6.51 8.36 -40.82 -0.34 6.17 16 28 H 0.15 3.28 5.17 -52.92 -0.27 3.01 16 29 H 0.11 2.02 8.06 -52.48 -0.42 1.60 16 30 H 0.11 2.36 8.06 -52.48 -0.42 1.94 16 31 H 0.28 7.38 8.72 -40.82 -0.36 7.02 16 LS Contribution 265.97 15.07 4.01 4.01 Total: -1.00 -31.32 265.97 -6.38 -37.70 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -3.42 Total: 8.40 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -3.28 Total: -6.07 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.60 Total: -57.44 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.07 Total: -9.86 kcal Atomic # 14 Polarization: 27.62 SS G_CDS: -4.35 Total: 23.26 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.32 -6.38 -37.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119317724.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.558 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds