Wall clock time and date at job start Sun Mar 29 2020 22:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46898 * 2 1 4 4 N 1.46894 * 109.47252 * 240.00091 * 2 1 3 5 5 C 1.50699 * 109.47128 * 119.99576 * 2 1 3 6 6 O 1.21273 * 119.99904 * 120.00337 * 5 2 1 7 7 N 1.34775 * 120.00268 * 300.00202 * 5 2 1 8 8 C 1.39262 * 120.00315 * 185.58121 * 7 5 2 9 9 C 1.39669 * 119.57470 * 18.84772 * 8 7 5 10 10 C 1.38662 * 119.50043 * 179.97438 * 9 8 7 11 11 C 1.38352 * 118.66547 * 0.02562 * 10 9 8 12 12 C 1.40580 * 119.13095 * 359.97438 * 11 10 9 13 13 C 1.41335 * 119.78814 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00159 * 8.92643 * 13 12 11 15 15 C 1.40029 * 119.99790 * 188.93448 * 13 12 11 16 16 N 1.30748 * 119.99512 * 196.07054 * 15 13 12 17 17 Si 1.86796 * 120.00354 * 16.06449 * 15 13 12 18 18 H 1.48496 * 109.47674 * 270.00562 * 17 15 13 19 19 H 1.48499 * 109.46972 * 30.00592 * 17 15 13 20 20 H 1.48501 * 109.46971 * 150.00245 * 17 15 13 21 21 N 1.31911 * 119.57912 * 199.08721 * 8 7 5 22 22 H 1.09004 * 109.47666 * 299.99918 * 1 2 3 23 23 H 1.08996 * 109.47317 * 60.00495 * 1 2 3 24 24 H 1.09007 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.00901 * 110.99556 * 296.04265 * 4 2 1 26 26 H 1.00897 * 111.00123 * 59.99627 * 4 2 1 27 27 H 0.97004 * 120.00086 * 5.58086 * 7 5 2 28 28 H 1.07995 * 120.25568 * 359.95743 * 9 8 7 29 29 H 1.07992 * 120.66702 * 179.97438 * 10 9 8 30 30 H 1.08002 * 120.43413 * 180.02562 * 11 10 9 31 31 H 0.96997 * 120.00216 * 354.93071 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 2.0323 -0.7103 1.2305 6 8 2.7296 -1.6963 1.1193 7 7 1.7067 -0.2498 2.4546 8 6 2.2637 -0.8343 3.5893 9 6 3.4244 -1.6019 3.4702 10 6 3.9780 -2.1827 4.6012 11 6 3.3577 -1.9822 5.8215 12 6 2.1914 -1.1991 5.8759 13 6 1.5461 -0.9857 7.1151 14 1 2.0220 -1.2987 8.0326 15 6 0.2897 -0.3687 7.1530 16 7 -0.1685 0.1125 8.2791 17 14 -0.7317 -0.2328 5.5950 18 1 -0.4049 1.0370 4.8979 19 1 -0.4277 -1.3799 4.7022 20 1 -2.1745 -0.2477 5.9461 21 7 1.6856 -0.6597 4.7621 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7502 -1.6648 -1.1908 26 1 1.6961 -0.2350 -2.0385 27 1 1.0844 0.4887 2.5453 28 1 3.8872 -1.7423 2.5046 29 1 4.8748 -2.7801 4.5307 30 1 3.7645 -2.4208 6.7206 31 1 0.3275 -0.0224 9.1017 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119317725.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:19 Heat of formation + Delta-G solvation = -10.276085 kcal Electronic energy + Delta-G solvation = -16368.893943 eV Core-core repulsion = 13649.735605 eV Total energy + Delta-G solvation = -2719.158338 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.23944 -38.24417 -35.29689 -34.56983 -33.48851 -31.07311 -29.83227 -28.58891 -25.47399 -24.45413 -21.87252 -21.49788 -19.69148 -18.40676 -17.64435 -16.82603 -15.48375 -15.21671 -14.95094 -14.60055 -14.23669 -13.74519 -13.51410 -13.29657 -12.96676 -12.63531 -12.37270 -12.21047 -11.86280 -11.69441 -11.10932 -10.85967 -10.33622 -9.98959 -9.73871 -9.20156 -9.09472 -8.86617 -8.50778 -7.92637 -7.41170 -7.28225 -4.76211 2.22017 2.67141 3.04696 3.21824 3.44719 3.58869 3.87950 4.31563 4.39100 4.58595 4.66939 4.83687 4.97178 5.38482 5.51761 5.55505 5.82712 5.87599 6.10001 6.46997 6.53756 6.58252 6.83836 7.15214 7.21686 7.26093 7.43472 7.59123 7.63305 7.78537 8.12063 8.30105 8.46725 8.65770 9.43737 9.96696 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.029215 B = 0.008765 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.186780 B = 3193.628608 C = 4060.000257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.075 3.925 3 H 0.110 0.890 4 N -0.826 5.826 5 C 0.516 3.484 6 O -0.500 6.500 7 N -0.655 5.655 8 C 0.383 3.617 9 C -0.310 4.310 10 C -0.037 4.037 11 C -0.278 4.278 12 C 0.274 3.726 13 C -0.482 4.482 14 H 0.084 0.916 15 C 0.049 3.951 16 N -0.804 5.804 17 Si 1.143 2.857 18 H -0.288 1.288 19 H -0.280 1.280 20 H -0.327 1.327 21 N -0.596 5.596 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.350 0.650 26 H 0.346 0.654 27 H 0.406 0.594 28 H 0.139 0.861 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 1.603 -13.401 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.041 4.041 3 H 0.128 0.872 4 N -0.358 5.358 5 C 0.302 3.698 6 O -0.373 6.373 7 N -0.301 5.301 8 C 0.152 3.848 9 C -0.335 4.335 10 C -0.061 4.061 11 C -0.300 4.300 12 C 0.150 3.850 13 C -0.514 4.514 14 H 0.102 0.898 15 C -0.173 4.173 16 N -0.426 5.426 17 Si 0.976 3.024 18 H -0.215 1.215 19 H -0.208 1.208 20 H -0.259 1.259 21 N -0.320 5.320 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.165 0.835 26 H 0.160 0.840 27 H 0.241 0.759 28 H 0.156 0.844 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.446 2.185 -13.653 13.902 hybrid contribution 0.936 -0.830 0.763 1.465 sum -0.510 1.355 -12.890 12.971 Atomic orbital electron populations 1.22644 0.95407 1.03297 1.03523 1.21339 0.93652 0.99277 0.89809 0.87215 1.58498 1.67367 1.07368 1.02551 1.20452 0.80812 0.84704 0.83852 1.90625 1.35884 1.24859 1.85914 1.43291 1.46192 1.36024 1.04579 1.18094 0.89410 0.92148 0.85181 1.21541 1.00456 1.11117 1.00385 1.20930 0.96974 0.95690 0.92506 1.21619 1.02116 1.09164 0.97110 1.18185 0.89800 0.87313 0.89702 1.20655 1.03380 1.34780 0.92593 0.89821 1.27646 0.96621 0.88615 1.04392 1.70612 1.41601 1.29495 1.00893 0.82138 0.70149 0.78477 0.71601 1.21506 1.20775 1.25927 1.66171 1.34704 1.32817 0.98350 0.91085 0.91232 0.91780 0.83537 0.84034 0.75879 0.84385 0.87634 0.87706 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.74 9.37 37.16 0.35 -1.40 16 2 C 0.07 0.85 3.79 -68.87 -0.26 0.59 16 3 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 4 N -0.83 -8.82 8.88 -5.66 -0.05 -8.87 16 5 C 0.52 8.64 7.03 -10.99 -0.08 8.56 16 6 O -0.50 -10.05 13.00 5.56 0.07 -9.97 16 7 N -0.65 -12.12 5.34 -11.40 -0.06 -12.18 16 8 C 0.38 8.90 7.51 -154.98 -1.16 7.73 16 9 C -0.31 -7.17 8.83 -38.89 -0.34 -7.51 16 10 C -0.04 -0.83 10.15 -39.38 -0.40 -1.23 16 11 C -0.28 -6.75 9.83 -38.66 -0.38 -7.13 16 12 C 0.27 7.28 6.27 -85.00 -0.53 6.75 16 13 C -0.48 -13.18 9.51 -37.73 -0.36 -13.54 16 14 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 15 C 0.05 1.33 5.51 -17.34 -0.10 1.23 16 16 N -0.80 -21.77 13.65 55.55 0.76 -21.01 16 17 Si 1.14 27.45 25.93 -169.99 -4.41 23.04 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.92 6.55 56.52 0.37 -6.55 16 20 H -0.33 -7.69 7.11 56.52 0.40 -7.29 16 21 N -0.60 -15.20 5.06 -10.26 -0.05 -15.25 16 22 H 0.07 0.66 7.45 -51.93 -0.39 0.27 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.35 3.87 8.68 -39.29 -0.34 3.53 16 26 H 0.35 2.59 9.04 -39.29 -0.36 2.23 16 27 H 0.41 6.50 8.09 -40.82 -0.33 6.17 16 28 H 0.14 3.15 5.33 -52.51 -0.28 2.87 16 29 H 0.11 2.03 8.06 -52.49 -0.42 1.60 16 30 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 31 H 0.28 7.37 8.73 -40.82 -0.36 7.02 16 LS Contribution 266.35 15.07 4.01 4.01 Total: -1.00 -31.35 266.35 -6.40 -37.75 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -3.41 Total: 8.41 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -3.26 Total: -5.94 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.60 Total: -57.31 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 27.45 SS G_CDS: -4.41 Total: 23.04 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.35 -6.40 -37.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119317725.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.476 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds