Wall clock time and date at job start Sun Mar 29 2020 22:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46898 * 2 1 4 4 N 1.46894 * 109.47252 * 240.00091 * 2 1 3 5 5 C 1.50699 * 109.47128 * 119.99576 * 2 1 3 6 6 O 1.21273 * 119.99904 * 120.00337 * 5 2 1 7 7 N 1.34775 * 120.00268 * 300.00202 * 5 2 1 8 8 C 1.39262 * 120.00315 * 185.58121 * 7 5 2 9 9 C 1.39669 * 119.57470 * 18.84772 * 8 7 5 10 10 C 1.38662 * 119.50043 * 179.97438 * 9 8 7 11 11 C 1.38352 * 118.66547 * 0.02562 * 10 9 8 12 12 C 1.40580 * 119.13095 * 359.97438 * 11 10 9 13 13 C 1.41335 * 119.78814 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00159 * 8.92643 * 13 12 11 15 15 C 1.40029 * 119.99790 * 188.93448 * 13 12 11 16 16 N 1.30748 * 119.99512 * 196.07054 * 15 13 12 17 17 Si 1.86796 * 120.00354 * 16.06449 * 15 13 12 18 18 H 1.48496 * 109.47674 * 270.00562 * 17 15 13 19 19 H 1.48499 * 109.46972 * 30.00592 * 17 15 13 20 20 H 1.48501 * 109.46971 * 150.00245 * 17 15 13 21 21 N 1.31911 * 119.57912 * 199.08721 * 8 7 5 22 22 H 1.09004 * 109.47666 * 299.99918 * 1 2 3 23 23 H 1.08996 * 109.47317 * 60.00495 * 1 2 3 24 24 H 1.09007 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.00901 * 110.99556 * 296.04265 * 4 2 1 26 26 H 1.00897 * 111.00123 * 59.99627 * 4 2 1 27 27 H 0.97004 * 120.00086 * 5.58086 * 7 5 2 28 28 H 1.07995 * 120.25568 * 359.95743 * 9 8 7 29 29 H 1.07992 * 120.66702 * 179.97438 * 10 9 8 30 30 H 1.08002 * 120.43413 * 180.02562 * 11 10 9 31 31 H 0.96997 * 120.00216 * 354.93071 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 2.0323 -0.7103 1.2305 6 8 2.7296 -1.6963 1.1193 7 7 1.7067 -0.2498 2.4546 8 6 2.2637 -0.8343 3.5893 9 6 3.4244 -1.6019 3.4702 10 6 3.9780 -2.1827 4.6012 11 6 3.3577 -1.9822 5.8215 12 6 2.1914 -1.1991 5.8759 13 6 1.5461 -0.9857 7.1151 14 1 2.0220 -1.2987 8.0326 15 6 0.2897 -0.3687 7.1530 16 7 -0.1685 0.1125 8.2791 17 14 -0.7317 -0.2328 5.5950 18 1 -0.4049 1.0370 4.8979 19 1 -0.4277 -1.3799 4.7022 20 1 -2.1745 -0.2477 5.9461 21 7 1.6856 -0.6597 4.7621 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7502 -1.6648 -1.1908 26 1 1.6961 -0.2350 -2.0385 27 1 1.0844 0.4887 2.5453 28 1 3.8872 -1.7423 2.5046 29 1 4.8748 -2.7801 4.5307 30 1 3.7645 -2.4208 6.7206 31 1 0.3275 -0.0224 9.1017 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119317725.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:19 Heat of formation + Delta-G solvation = -33.498192 kcal Electronic energy + Delta-G solvation = -16369.900929 eV Core-core repulsion = 13649.735605 eV Total energy + Delta-G solvation = -2720.165324 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.73863 -39.96476 -36.42654 -36.12826 -35.34630 -32.96313 -31.50200 -29.56901 -27.35026 -25.70471 -23.65643 -23.10036 -21.20241 -20.26254 -19.04665 -18.29878 -16.96174 -16.76424 -16.58017 -16.01152 -15.74794 -15.31577 -14.91029 -14.60778 -14.36402 -14.20411 -13.92937 -13.73721 -13.40730 -12.87533 -12.65288 -12.51584 -12.17829 -11.86128 -11.57055 -11.04752 -10.65395 -10.38988 -9.86256 -9.71141 -9.33014 -9.21537 -6.80785 0.50151 0.75439 1.50074 1.53342 1.72880 1.81836 1.99728 2.40136 2.62427 3.47375 3.58217 3.60700 4.01368 4.08322 4.16070 4.41694 4.65390 4.69001 4.71942 4.78528 4.81363 5.15137 5.35230 5.38841 5.43398 5.72284 5.80286 5.93972 6.04564 6.32648 6.42321 6.57797 6.65338 7.07272 7.52019 7.92242 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.029215 B = 0.008765 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.186780 B = 3193.628608 C = 4060.000257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.087 3.913 3 H 0.134 0.866 4 N -0.836 5.836 5 C 0.513 3.487 6 O -0.535 6.535 7 N -0.651 5.651 8 C 0.374 3.626 9 C -0.311 4.311 10 C -0.031 4.031 11 C -0.295 4.295 12 C 0.258 3.742 13 C -0.513 4.513 14 H 0.068 0.932 15 C 0.021 3.979 16 N -0.824 5.824 17 Si 1.174 2.826 18 H -0.269 1.269 19 H -0.292 1.292 20 H -0.320 1.320 21 N -0.607 5.607 22 H 0.071 0.929 23 H 0.101 0.899 24 H 0.053 0.947 25 H 0.348 0.652 26 H 0.366 0.634 27 H 0.418 0.582 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.114 0.886 31 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 2.238 -16.057 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.028 4.028 3 H 0.151 0.849 4 N -0.370 5.370 5 C 0.301 3.699 6 O -0.410 6.410 7 N -0.299 5.299 8 C 0.142 3.858 9 C -0.335 4.335 10 C -0.055 4.055 11 C -0.317 4.317 12 C 0.132 3.868 13 C -0.545 4.545 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.447 5.447 17 Si 1.004 2.996 18 H -0.196 1.196 19 H -0.221 1.221 20 H -0.252 1.252 21 N -0.332 5.332 22 H 0.090 0.910 23 H 0.119 0.881 24 H 0.072 0.928 25 H 0.161 0.839 26 H 0.182 0.818 27 H 0.256 0.744 28 H 0.163 0.837 29 H 0.159 0.841 30 H 0.132 0.868 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.531 2.858 -16.342 16.661 hybrid contribution 1.100 -1.102 1.428 2.112 sum -0.431 1.756 -14.915 15.024 Atomic orbital electron populations 1.22640 0.93406 1.03217 1.05175 1.21344 0.94961 0.99305 0.87159 0.84869 1.58477 1.67845 1.07457 1.03182 1.21578 0.79616 0.84212 0.84455 1.90591 1.37472 1.26595 1.86330 1.43397 1.46368 1.36196 1.03897 1.18476 0.89543 0.91981 0.85842 1.21867 1.00307 1.10475 1.00879 1.21324 0.97672 0.95040 0.91447 1.21782 1.01997 1.09510 0.98443 1.18384 0.90647 0.87796 0.89929 1.20658 1.04287 1.36885 0.92700 0.91344 1.28464 0.97140 0.88215 1.05818 1.70636 1.42018 1.30930 1.01096 0.81743 0.69570 0.78674 0.69603 1.19555 1.22059 1.25222 1.66185 1.35133 1.33054 0.98826 0.91003 0.88061 0.92751 0.83862 0.81757 0.74416 0.83689 0.84067 0.86785 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 9.37 71.98 0.67 -2.05 16 2 C 0.09 1.68 3.79 44.17 0.17 1.85 16 3 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 4 N -0.84 -15.23 8.88 -171.81 -1.53 -16.75 16 5 C 0.51 15.95 7.03 87.66 0.62 16.57 16 6 O -0.53 -20.53 13.00 -3.01 -0.04 -20.57 16 7 N -0.65 -22.71 5.34 -308.37 -1.65 -24.36 16 8 C 0.37 16.83 7.51 133.25 1.00 17.83 16 9 C -0.31 -13.84 8.83 22.72 0.20 -13.64 16 10 C -0.03 -1.32 10.15 22.40 0.23 -1.10 16 11 C -0.30 -14.21 9.83 22.87 0.22 -13.98 16 12 C 0.26 13.74 6.27 40.19 0.25 14.00 16 13 C -0.51 -28.75 9.51 23.47 0.22 -28.52 16 14 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 15 C 0.02 1.16 5.51 85.29 0.47 1.63 16 16 N -0.82 -45.38 13.65 21.84 0.30 -45.08 16 17 Si 1.17 55.19 25.93 68.60 1.78 56.97 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.29 -14.20 6.55 99.48 0.65 -13.55 16 20 H -0.32 -14.54 7.11 99.48 0.71 -13.83 16 21 N -0.61 -30.52 5.06 -186.36 -0.94 -31.47 16 22 H 0.07 1.07 7.45 -2.38 -0.02 1.05 16 23 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.35 6.84 8.68 -89.69 -0.78 6.06 16 26 H 0.37 4.11 9.04 -89.70 -0.81 3.30 16 27 H 0.42 12.34 8.09 -92.71 -0.75 11.59 16 28 H 0.15 6.33 5.33 -3.18 -0.02 6.31 16 29 H 0.14 5.00 8.06 -2.91 -0.02 4.98 16 30 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 31 H 0.28 15.09 8.73 -92.71 -0.81 14.28 16 Total: -1.00 -67.41 266.35 0.73 -66.68 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -1.25 Total: 21.99 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 4.06 Total: -7.41 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -3.82 Total: -117.66 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.04 Total: -20.57 kcal Atomic # 14 Polarization: 55.19 SS G_CDS: 1.78 Total: 56.97 kcal Total: -67.41 0.73 -66.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119317725.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.182 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds