Wall clock time and date at job start Sun Mar 29 2020 22:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38264 * 120.00190 * 2 1 4 4 N 1.32430 * 119.82290 * 354.53617 * 3 2 1 5 5 C 1.31857 * 121.77082 * 179.97438 * 4 3 2 6 6 C 1.38377 * 121.22057 * 0.02562 * 5 4 3 7 7 C 1.38335 * 119.50669 * 0.25134 * 6 5 4 8 8 C 1.39983 * 118.36664 * 359.51461 * 7 6 5 9 9 C 1.47424 * 120.60836 * 180.23559 * 8 7 6 10 10 O 1.21595 * 120.00045 * 185.68116 * 9 8 7 11 11 N 1.34779 * 119.99795 * 5.69086 * 9 8 7 12 12 C 1.46497 * 119.99805 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47110 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00081 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00401 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00402 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99548 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47357 * 90.00012 * 17 15 13 19 19 H 1.48507 * 109.46894 * 210.00197 * 17 15 13 20 20 H 1.48503 * 109.47354 * 329.99675 * 17 15 13 21 21 H 1.09003 * 109.47228 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47438 * 300.00361 * 1 2 3 23 23 H 1.09004 * 109.47173 * 60.00299 * 1 2 3 24 24 H 0.97004 * 120.00123 * 179.97438 * 2 1 3 25 25 H 1.08001 * 119.38872 * 180.02562 * 5 4 3 26 26 H 1.07993 * 120.24241 * 179.97438 * 6 5 4 27 27 H 1.07998 * 120.81430 * 179.74540 * 7 6 5 28 28 H 0.97004 * 120.00470 * 359.97438 * 11 9 8 29 29 H 1.09000 * 109.47072 * 299.98932 * 12 11 9 30 30 H 1.08996 * 109.47662 * 59.99210 * 12 11 9 31 31 H 0.97007 * 120.00447 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1563 1.1974 0.0000 4 7 1.4952 2.3396 -0.1094 5 6 2.1154 3.5032 -0.1132 6 6 3.4925 3.5823 -0.0029 7 6 4.2350 2.4203 0.1084 8 6 3.5567 1.1958 0.1155 9 6 4.2985 -0.0724 0.2370 10 8 3.7108 -1.1323 0.1384 11 7 5.6280 -0.0570 0.4576 12 6 6.3652 -1.3173 0.5777 13 6 7.8237 -1.0250 0.8195 14 1 8.1672 -0.0027 0.8774 15 6 8.7196 -2.0626 0.9668 16 7 9.9924 -1.8076 1.1773 17 14 8.1253 -3.8308 0.8674 18 1 8.1960 -4.2984 -0.5402 19 1 8.9862 -4.6909 1.7186 20 1 6.7213 -3.9088 1.3450 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.9500 -0.8401 0.0004 25 1 1.5380 4.4113 -0.2040 26 1 3.9843 4.5437 -0.0081 27 1 5.3111 2.4573 0.1915 28 1 6.0969 0.7885 0.5360 29 1 5.9665 -1.8932 1.4129 30 1 6.2576 -1.8905 -0.3431 31 1 10.6228 -2.5376 1.2805 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120728056.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:53 Heat of formation + Delta-G solvation = 5.756587 kcal Electronic energy + Delta-G solvation = -15946.098164 eV Core-core repulsion = 13227.635055 eV Total energy + Delta-G solvation = -2718.463109 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.48881 -38.45977 -35.78211 -34.30548 -32.74466 -32.03400 -30.32270 -28.03435 -25.92844 -24.41399 -22.31943 -21.86023 -20.21247 -17.97482 -17.58598 -16.58036 -16.39012 -15.17750 -15.05964 -14.88964 -14.35166 -14.19917 -14.06044 -13.49489 -13.05897 -12.77800 -12.41845 -12.30704 -12.23178 -12.07570 -11.06799 -10.82337 -10.27919 -10.01982 -9.81808 -9.70545 -9.53517 -9.17586 -8.83607 -8.31801 -7.58244 -6.25547 -4.28437 0.94176 1.53701 3.22908 3.26993 3.30348 3.37914 3.43519 3.89912 4.11598 4.29442 4.58509 4.85398 5.08612 5.09749 5.17796 5.34425 5.39657 5.58145 5.65999 5.81180 5.95550 6.22743 6.52398 6.73095 7.00087 7.04234 7.28500 7.33012 7.59423 8.04713 8.27387 8.44066 8.68831 8.82764 9.33807 10.86303 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.036531 B = 0.006072 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.289641 B = 4609.855561 C = 5350.362339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.708 5.708 3 C 0.448 3.552 4 N -0.554 5.554 5 C 0.171 3.829 6 C -0.251 4.251 7 C 0.003 3.997 8 C -0.257 4.257 9 C 0.560 3.440 10 O -0.567 6.567 11 N -0.694 5.694 12 C 0.219 3.781 13 C -0.546 4.546 14 H 0.080 0.920 15 C 0.079 3.921 16 N -0.891 5.891 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.261 1.261 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.428 0.572 25 H 0.156 0.844 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.397 0.603 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.735 8.639 -2.183 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.351 5.351 3 C 0.208 3.792 4 N -0.272 5.272 5 C 0.011 3.989 6 C -0.274 4.274 7 C -0.023 4.023 8 C -0.268 4.268 9 C 0.348 3.652 10 O -0.450 6.450 11 N -0.340 5.340 12 C 0.097 3.903 13 C -0.584 4.584 14 H 0.098 0.902 15 C -0.125 4.125 16 N -0.528 5.528 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.185 1.185 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.279 0.721 25 H 0.173 0.827 26 H 0.153 0.847 27 H 0.156 0.844 28 H 0.232 0.768 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.981 7.621 -2.275 17.851 hybrid contribution 1.217 -0.657 0.068 1.384 sum -14.765 6.965 -2.207 16.473 Atomic orbital electron populations 1.21476 0.80320 1.01499 1.01621 1.45444 1.06713 1.06603 1.76345 1.18331 0.86765 0.86969 0.87094 1.67327 1.39985 0.97458 1.22442 1.22576 0.92145 0.94515 0.89673 1.21696 0.95269 0.99059 1.11356 1.21601 1.00275 0.91006 0.89461 1.20315 0.93351 0.94962 1.18196 1.17910 0.82746 0.87637 0.76902 1.90320 1.67652 1.32401 1.54577 1.46039 1.06607 1.11791 1.69608 1.19561 0.91929 0.81923 0.96840 1.21068 0.89635 0.95799 1.51882 0.90197 1.24783 0.94595 0.99331 0.93813 1.69872 1.02134 1.32844 1.47932 0.86815 0.79651 0.84409 0.78800 1.19811 1.20848 1.18514 0.91246 0.92889 0.92630 0.72090 0.82700 0.84750 0.84418 0.76773 0.95416 0.95869 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.13 10.72 59.84 0.64 1.77 16 2 N -0.71 -11.02 5.73 -67.01 -0.38 -11.40 16 3 C 0.45 7.26 7.48 -155.18 -1.16 6.10 16 4 N -0.55 -8.00 9.55 -12.20 -0.12 -8.12 16 5 C 0.17 1.97 11.16 -17.49 -0.20 1.77 16 6 C -0.25 -2.79 10.09 -39.49 -0.40 -3.19 16 7 C 0.00 0.04 9.63 -38.89 -0.37 -0.34 16 8 C -0.26 -4.26 5.91 -104.64 -0.62 -4.88 16 9 C 0.56 11.04 7.75 -12.52 -0.10 10.94 16 10 O -0.57 -12.35 13.67 5.28 0.07 -12.27 16 11 N -0.69 -14.12 5.50 -62.57 -0.34 -14.47 16 12 C 0.22 5.32 4.50 -5.19 -0.02 5.30 16 13 C -0.55 -14.78 9.83 -34.44 -0.34 -15.12 16 14 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 16 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 17 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 21 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.43 7.32 5.33 -40.92 -0.22 7.10 16 25 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 26 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.14 1.61 6.55 -52.49 -0.34 1.27 16 28 H 0.40 7.12 6.45 -40.82 -0.26 6.86 16 29 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 30 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 268.96 15.07 4.05 4.05 Total: -1.00 -31.64 268.96 -6.56 -38.20 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -3.28 Total: 8.45 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -2.66 Total: 4.46 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.07 Total: -59.38 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.07 Total: -12.27 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.64 -6.56 -38.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120728056.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.960 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds